Gchil1243.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1243.t1
Unique NameGchil1243.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:620379..621215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps28025
PFAMsDUF3641,Radical_SAM
Max annot lvl2836|Bacillariophyta
Evalue8.1e-93
EggNOG OGsCOG0535@1|root,2QWFM@2759|Eukaryota,2XBC9@2836|Bacillariophyta
DescriptionProtein of unknown function (DUF3641)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1243Gchil1243Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 620379..621215 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1243.t1.start1Gchil1243.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 620379..620381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1243.t1.CDS1Gchil1243.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 620379..621215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1243.t1.exon1Gchil1243.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 620379..621215 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1243.t1.stop1Gchil1243.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 621213..621215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1243.t1Gchil1243.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 620379..621215 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1243.t1 ID=Gchil1243.t1|Name=Gchil1243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MSSLTADRLIHLTENTPSIQVADITGGAPEMHSQFRPLVRAFRKMGISVI
DRCNLTVLLQADQYDLVHFLAEHQVRVIASLPCYTSQNVEKQRGNGVFDS
SIEALRRLNDVGYGRDPLLKLDLVYNPVGALLPPSQGQLEIDYKRELKRA
FDIDFTSLMCITNMPIKRFADDLLAHGRLEQYVNLLINSFNSQNVNNLMC
LDMVHVSHEGCFYDCDFNYALGMHLPVPNENTSVRKTKGLSVFDVDSFAD
LQARKIQTGTHCFGCTAGSGSSCGGNLS*
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spliced messenger RNA

>Gchil1243.t1 ID=Gchil1243.t1|Name=Gchil1243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004437_pilon:620379..621215+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTTTGACCGCAGATCGATTGATTCATCTCACGGAGAATACACC
ATCCATTCAAGTCGCCGACATTACCGGGGGAGCTCCCGAGATGCACTCCC
AATTTCGTCCGCTCGTGCGAGCTTTCAGGAAGATGGGTATTTCGGTCATT
GACAGATGTAACCTTACCGTTCTACTCCAAGCAGATCAATATGATCTCGT
GCATTTCCTAGCTGAACACCAAGTGAGAGTAATCGCTTCACTTCCATGTT
ACACATCACAGAACGTCGAGAAGCAGAGAGGAAATGGCGTCTTCGATTCA
AGTATCGAAGCTCTACGCCGTCTAAACGATGTTGGCTATGGACGAGATCC
GCTTCTTAAACTTGATTTGGTTTACAATCCAGTGGGTGCTTTACTTCCGC
CATCGCAAGGACAGCTGGAAATAGACTACAAGCGCGAGTTGAAACGCGCC
TTTGACATCGACTTCACAAGTTTAATGTGTATCACAAACATGCCTATCAA
GAGATTTGCCGATGACCTTCTCGCACACGGACGTCTGGAACAGTATGTCA
ACCTTCTTATTAACAGTTTTAATAGTCAAAATGTGAACAATCTCATGTGT
CTCGATATGGTTCACGTCTCTCACGAAGGTTGTTTCTACGACTGTGATTT
CAATTACGCATTGGGGATGCACTTACCAGTTCCAAACGAAAACACTTCTG
TCCGTAAGACGAAGGGTCTTAGTGTATTCGATGTAGATAGTTTTGCCGAT
TTGCAAGCGAGAAAAATCCAAACTGGGACTCACTGTTTTGGATGTACGGC
TGGAAGCGGTTCCAGTTGCGGTGGGAATCTTTCTTGA
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protein sequence of Gchil1243.t1

>Gchil1243.t1 ID=Gchil1243.t1|Name=Gchil1243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MSSLTADRLIHLTENTPSIQVADITGGAPEMHSQFRPLVRAFRKMGISVI
DRCNLTVLLQADQYDLVHFLAEHQVRVIASLPCYTSQNVEKQRGNGVFDS
SIEALRRLNDVGYGRDPLLKLDLVYNPVGALLPPSQGQLEIDYKRELKRA
FDIDFTSLMCITNMPIKRFADDLLAHGRLEQYVNLLINSFNSQNVNNLMC
LDMVHVSHEGCFYDCDFNYALGMHLPVPNENTSVRKTKGLSVFDVDSFAD
LQARKIQTGTHCFGCTAGSGSSCGGNLS*
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mRNA from alignment at tig00004437_pilon:620379..621215+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1243.t1 ID=Gchil1243.t1|Name=Gchil1243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004437_pilon:620379..621215+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTTGACCGCAGATCGATTGATTCATCTCACGGAGAATACACC
ATCCATTCAAGTCGCCGACATTACCGGGGGAGCTCCCGAGATGCACTCCC
AATTTCGTCCGCTCGTGCGAGCTTTCAGGAAGATGGGTATTTCGGTCATT
GACAGATGTAACCTTACCGTTCTACTCCAAGCAGATCAATATGATCTCGT
GCATTTCCTAGCTGAACACCAAGTGAGAGTAATCGCTTCACTTCCATGTT
ACACATCACAGAACGTCGAGAAGCAGAGAGGAAATGGCGTCTTCGATTCA
AGTATCGAAGCTCTACGCCGTCTAAACGATGTTGGCTATGGACGAGATCC
GCTTCTTAAACTTGATTTGGTTTACAATCCAGTGGGTGCTTTACTTCCGC
CATCGCAAGGACAGCTGGAAATAGACTACAAGCGCGAGTTGAAACGCGCC
TTTGACATCGACTTCACAAGTTTAATGTGTATCACAAACATGCCTATCAA
GAGATTTGCCGATGACCTTCTCGCACACGGACGTCTGGAACAGTATGTCA
ACCTTCTTATTAACAGTTTTAATAGTCAAAATGTGAACAATCTCATGTGT
CTCGATATGGTTCACGTCTCTCACGAAGGTTGTTTCTACGACTGTGATTT
CAATTACGCATTGGGGATGCACTTACCAGTTCCAAACGAAAACACTTCTG
TCCGTAAGACGAAGGGTCTTAGTGTATTCGATGTAGATAGTTTTGCCGAT
TTGCAAGCGAGAAAAATCCAAACTGGGACTCACTGTTTTGGATGTACGGC
TGGAAGCGGTTCCAGTTGCGGTGGGAATCTTTCTTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:620379..621215+

>Gchil1243.t1 ID=Gchil1243.t1|Name=Gchil1243.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00004437_pilon:620379..621215+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTTGACCGCAGATCGATTGATTCATCTCACGGAGAATACACC
ATCCATTCAAGTCGCCGACATTACCGGGGGAGCTCCCGAGATGCACTCCC
AATTTCGTCCGCTCGTGCGAGCTTTCAGGAAGATGGGTATTTCGGTCATT
GACAGATGTAACCTTACCGTTCTACTCCAAGCAGATCAATATGATCTCGT
GCATTTCCTAGCTGAACACCAAGTGAGAGTAATCGCTTCACTTCCATGTT
ACACATCACAGAACGTCGAGAAGCAGAGAGGAAATGGCGTCTTCGATTCA
AGTATCGAAGCTCTACGCCGTCTAAACGATGTTGGCTATGGACGAGATCC
GCTTCTTAAACTTGATTTGGTTTACAATCCAGTGGGTGCTTTACTTCCGC
CATCGCAAGGACAGCTGGAAATAGACTACAAGCGCGAGTTGAAACGCGCC
TTTGACATCGACTTCACAAGTTTAATGTGTATCACAAACATGCCTATCAA
GAGATTTGCCGATGACCTTCTCGCACACGGACGTCTGGAACAGTATGTCA
ACCTTCTTATTAACAGTTTTAATAGTCAAAATGTGAACAATCTCATGTGT
CTCGATATGGTTCACGTCTCTCACGAAGGTTGTTTCTACGACTGTGATTT
CAATTACGCATTGGGGATGCACTTACCAGTTCCAAACGAAAACACTTCTG
TCCGTAAGACGAAGGGTCTTAGTGTATTCGATGTAGATAGTTTTGCCGAT
TTGCAAGCGAGAAAAATCCAAACTGGGACTCACTGTTTTGGATGTACGGC
TGGAAGCGGTTCCAGTTGCGGTGGGAATCTTTCTTGA
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