Gchil1242.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1242.t1
Unique NameGchil1242.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:618744..619586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SK81
PFAMsSRAP
Max annot lvl3041|Chlorophyta
Evalue1.46e-20
EggNOG OGsCOG2135@1|root,KOG2618@2759|Eukaryota,37MY1@33090|Viridiplantae,34MSN@3041|Chlorophyta
DescriptionSOS response associated peptidase (SRAP)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1242Gchil1242Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 618744..619586 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1242.t1.stop1Gchil1242.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 618744..618746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1242.t1.CDS1Gchil1242.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 618744..619586 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1242.t1.exon1Gchil1242.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 618744..619586 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1242.t1.start1Gchil1242.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 619584..619586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1242.t1Gchil1242.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 618744..619586 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1242.t1 ID=Gchil1242.t1|Name=Gchil1242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=281bp
MCGRYQLVADATALSASHRNAKWAAPEAEQQHKPRQQVRPTTRAPVLLHE
GAVPTFCTMKWGFSRGSSPLINARKETVLDLPTFRANMSRRCAIPITGFF
EWQKDIGPGKSSKTPFLVRGFPRAKFEDEKVMYMAGLYRKERHGGDAFDT
FVVLTENSASELGWLHNRQPVFLEDEQHVETWLSHHVSASDAVTTLDGTN
GFSWWRMKPDLSDRFRGRVLQQKGLDAFFGFKGKVKKDVDLKVRSPIQKR
QKKILGPKPQSHETDPLSSSKKVRIPKRTS*
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spliced messenger RNA

>Gchil1242.t1 ID=Gchil1242.t1|Name=Gchil1242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00004437_pilon:618744..619586- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGCCGCTATCAACTTGTAGCAGATGCGACAGCCCTCTCCGCATC
GCACCGAAACGCAAAATGGGCTGCCCCCGAGGCCGAACAACAACATAAGC
CACGCCAACAAGTACGCCCCACTACTCGAGCTCCAGTTCTCCTTCATGAG
GGAGCCGTCCCTACATTCTGCACTATGAAATGGGGGTTTTCACGGGGTAG
TTCTCCGCTCATAAACGCACGGAAGGAAACTGTCCTGGATTTGCCTACCT
TTCGGGCGAACATGAGCAGGCGATGTGCGATTCCAATAACTGGTTTCTTC
GAATGGCAGAAGGATATTGGTCCAGGGAAGAGTTCGAAGACTCCTTTCTT
GGTCCGCGGGTTTCCTCGCGCTAAGTTTGAAGATGAAAAGGTGATGTACA
TGGCGGGGCTTTACCGGAAAGAGCGACACGGTGGAGATGCTTTTGATACT
TTTGTTGTTCTCACCGAGAACTCGGCTTCGGAACTTGGCTGGCTACACAA
TAGGCAGCCTGTGTTCCTTGAAGACGAGCAACATGTTGAAACGTGGTTGA
GTCATCACGTGTCGGCCTCAGATGCTGTTACAACACTTGACGGTACTAAT
GGCTTTAGTTGGTGGCGTATGAAGCCAGATCTTTCAGATAGGTTCCGAGG
AAGGGTTTTACAACAGAAAGGATTAGACGCCTTCTTTGGATTCAAAGGAA
AGGTTAAGAAGGATGTCGACCTCAAAGTTAGGTCTCCCATTCAAAAGCGA
CAAAAAAAAATTCTGGGCCCAAAACCCCAATCCCATGAAACTGATCCATT
GTCCTCATCGAAAAAAGTCAGAATACCCAAGAGAACCAGTTAG
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protein sequence of Gchil1242.t1

>Gchil1242.t1 ID=Gchil1242.t1|Name=Gchil1242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=281bp
MCGRYQLVADATALSASHRNAKWAAPEAEQQHKPRQQVRPTTRAPVLLHE
GAVPTFCTMKWGFSRGSSPLINARKETVLDLPTFRANMSRRCAIPITGFF
EWQKDIGPGKSSKTPFLVRGFPRAKFEDEKVMYMAGLYRKERHGGDAFDT
FVVLTENSASELGWLHNRQPVFLEDEQHVETWLSHHVSASDAVTTLDGTN
GFSWWRMKPDLSDRFRGRVLQQKGLDAFFGFKGKVKKDVDLKVRSPIQKR
QKKILGPKPQSHETDPLSSSKKVRIPKRTS*
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mRNA from alignment at tig00004437_pilon:618744..619586-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1242.t1 ID=Gchil1242.t1|Name=Gchil1242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00004437_pilon:618744..619586- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGCCGCTATCAACTTGTAGCAGATGCGACAGCCCTCTCCGCATC
GCACCGAAACGCAAAATGGGCTGCCCCCGAGGCCGAACAACAACATAAGC
CACGCCAACAAGTACGCCCCACTACTCGAGCTCCAGTTCTCCTTCATGAG
GGAGCCGTCCCTACATTCTGCACTATGAAATGGGGGTTTTCACGGGGTAG
TTCTCCGCTCATAAACGCACGGAAGGAAACTGTCCTGGATTTGCCTACCT
TTCGGGCGAACATGAGCAGGCGATGTGCGATTCCAATAACTGGTTTCTTC
GAATGGCAGAAGGATATTGGTCCAGGGAAGAGTTCGAAGACTCCTTTCTT
GGTCCGCGGGTTTCCTCGCGCTAAGTTTGAAGATGAAAAGGTGATGTACA
TGGCGGGGCTTTACCGGAAAGAGCGACACGGTGGAGATGCTTTTGATACT
TTTGTTGTTCTCACCGAGAACTCGGCTTCGGAACTTGGCTGGCTACACAA
TAGGCAGCCTGTGTTCCTTGAAGACGAGCAACATGTTGAAACGTGGTTGA
GTCATCACGTGTCGGCCTCAGATGCTGTTACAACACTTGACGGTACTAAT
GGCTTTAGTTGGTGGCGTATGAAGCCAGATCTTTCAGATAGGTTCCGAGG
AAGGGTTTTACAACAGAAAGGATTAGACGCCTTCTTTGGATTCAAAGGAA
AGGTTAAGAAGGATGTCGACCTCAAAGTTAGGTCTCCCATTCAAAAGCGA
CAAAAAAAAATTCTGGGCCCAAAACCCCAATCCCATGAAACTGATCCATT
GTCCTCATCGAAAAAAGTCAGAATACCCAAGAGAACCAGTTAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:618744..619586-

>Gchil1242.t1 ID=Gchil1242.t1|Name=Gchil1242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00004437_pilon:618744..619586- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGCCGCTATCAACTTGTAGCAGATGCGACAGCCCTCTCCGCATC
GCACCGAAACGCAAAATGGGCTGCCCCCGAGGCCGAACAACAACATAAGC
CACGCCAACAAGTACGCCCCACTACTCGAGCTCCAGTTCTCCTTCATGAG
GGAGCCGTCCCTACATTCTGCACTATGAAATGGGGGTTTTCACGGGGTAG
TTCTCCGCTCATAAACGCACGGAAGGAAACTGTCCTGGATTTGCCTACCT
TTCGGGCGAACATGAGCAGGCGATGTGCGATTCCAATAACTGGTTTCTTC
GAATGGCAGAAGGATATTGGTCCAGGGAAGAGTTCGAAGACTCCTTTCTT
GGTCCGCGGGTTTCCTCGCGCTAAGTTTGAAGATGAAAAGGTGATGTACA
TGGCGGGGCTTTACCGGAAAGAGCGACACGGTGGAGATGCTTTTGATACT
TTTGTTGTTCTCACCGAGAACTCGGCTTCGGAACTTGGCTGGCTACACAA
TAGGCAGCCTGTGTTCCTTGAAGACGAGCAACATGTTGAAACGTGGTTGA
GTCATCACGTGTCGGCCTCAGATGCTGTTACAACACTTGACGGTACTAAT
GGCTTTAGTTGGTGGCGTATGAAGCCAGATCTTTCAGATAGGTTCCGAGG
AAGGGTTTTACAACAGAAAGGATTAGACGCCTTCTTTGGATTCAAAGGAA
AGGTTAAGAAGGATGTCGACCTCAAAGTTAGGTCTCCCATTCAAAAGCGA
CAAAAAAAAATTCTGGGCCCAAAACCCCAATCCCATGAAACTGATCCATT
GTCCTCATCGAAAAAAGTCAGAATACCCAAGAGAACCAGTTAG
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