Gchil1241.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1241.t1
Unique NameGchil1241.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:616798..617897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1241Gchil1241Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 616644..617897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1Gchil1241.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 616798..617897 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1.stop1Gchil1241.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 616798..616800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1.CDS1Gchil1241.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 616798..616808 -
Gchil1241.t1.CDS2Gchil1241.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 616898..617897 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1.exon1Gchil1241.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 616798..616808 -
Gchil1241.t1.exon2Gchil1241.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 616898..617897 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1.intron1Gchil1241.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 616809..616897 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1241.t1.start1Gchil1241.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 617895..617897 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1241.t1 ID=Gchil1241.t1|Name=Gchil1241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=337bp
MNVLNVHRPILDIIALHRQTLGPSGTSFYLLYPLNPIASGIMKVFAFFTF
ISLVSLCSAPTRACAGVLVKHGDGYKLIQTNRRVFKPSNVIDSNSPDRAK
LVKAKKVWPATIEFSAFGVATLYINGIIYSKLFSPHPWKMSVDLARGDVV
SIKAEKTGVYAGVMVTIRWKGRKIRSGRNVFKVRSDSYYSWEPEEQDYWN
RPLRDSNGIIRPLAAFCSWKDADIVHIKNLSFDKRAKFIWSLHTTHNDDE
EIKTPAQTVYIRHVMGGQMCGNDSQEKKINNKKNKGDTGGEKKNKEEKKN
LKNSGGEHHDGATPGQAKSSEEKNQDSLNAGVGGSM*
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spliced messenger RNA

>Gchil1241.t1 ID=Gchil1241.t1|Name=Gchil1241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00004437_pilon:616798..617897- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTGTTGAATGTCCATCGTCCAATACTGGACATAATTGCACTTCA
TCGACAGACTCTCGGACCCAGTGGAACGTCGTTCTACCTGCTTTATCCTC
TTAACCCCATTGCTTCTGGCATTATGAAGGTGTTTGCGTTTTTCACTTTT
ATCTCTCTTGTATCTCTGTGTTCGGCTCCCACAAGAGCTTGTGCTGGTGT
TCTGGTGAAACATGGAGATGGGTACAAGCTCATTCAGACAAATCGCCGTG
TCTTTAAACCGTCGAATGTGATCGACAGCAATTCTCCGGACCGAGCGAAA
CTCGTGAAAGCAAAAAAAGTTTGGCCAGCTACAATTGAGTTCTCTGCGTT
TGGGGTAGCCACCCTCTACATCAATGGAATCATATACAGCAAACTGTTCT
CACCTCATCCTTGGAAAATGTCTGTCGACCTCGCTCGAGGAGACGTCGTT
TCCATAAAGGCTGAGAAGACTGGGGTTTATGCAGGCGTGATGGTGACAAT
TCGTTGGAAAGGGCGCAAGATTCGATCAGGTCGAAATGTTTTCAAAGTGC
GAAGTGATAGCTACTATAGTTGGGAACCGGAGGAACAGGACTACTGGAAC
AGACCTCTGCGTGATAGTAATGGAATAATAAGGCCCTTGGCTGCCTTCTG
TTCTTGGAAAGATGCTGATATCGTGCACATCAAGAATCTCAGCTTCGATA
AGAGGGCGAAATTCATATGGAGTTTACATACCACTCACAACGATGATGAG
GAAATCAAAACACCTGCACAGACAGTTTACATTCGCCATGTAATGGGTGG
GCAGATGTGCGGAAATGATTCTCAAGAGAAGAAAATTAACAACAAGAAGA
ACAAGGGTGACACTGGCGGAGAGAAAAAGAACAAAGAGGAGAAAAAGAAC
CTTAAAAATTCAGGCGGTGAGCATCATGATGGAGCAACTCCGGGGCAAGC
GAAGAGCTCTGAAGAGAAAAATCAAGACAGCTTGAATGCCGGAGTTGGGG
GGTCCATGTAG
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protein sequence of Gchil1241.t1

>Gchil1241.t1 ID=Gchil1241.t1|Name=Gchil1241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=337bp
MNVLNVHRPILDIIALHRQTLGPSGTSFYLLYPLNPIASGIMKVFAFFTF
ISLVSLCSAPTRACAGVLVKHGDGYKLIQTNRRVFKPSNVIDSNSPDRAK
LVKAKKVWPATIEFSAFGVATLYINGIIYSKLFSPHPWKMSVDLARGDVV
SIKAEKTGVYAGVMVTIRWKGRKIRSGRNVFKVRSDSYYSWEPEEQDYWN
RPLRDSNGIIRPLAAFCSWKDADIVHIKNLSFDKRAKFIWSLHTTHNDDE
EIKTPAQTVYIRHVMGGQMCGNDSQEKKINNKKNKGDTGGEKKNKEEKKN
LKNSGGEHHDGATPGQAKSSEEKNQDSLNAGVGGSM*
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mRNA from alignment at tig00004437_pilon:616798..617897-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1241.t1 ID=Gchil1241.t1|Name=Gchil1241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1100bp|location=Sequence derived from alignment at tig00004437_pilon:616798..617897- (Gracilaria chilensis NLEC103_M9 male)
ATGAATGTGTTGAATGTCCATCGTCCAATACTGGACATAATTGCACTTCA
TCGACAGACTCTCGGACCCAGTGGAACGTCGTTCTACCTGCTTTATCCTC
TTAACCCCATTGCTTCTGGCATTATGAAGGTGTTTGCGTTTTTCACTTTT
ATCTCTCTTGTATCTCTGTGTTCGGCTCCCACAAGAGCTTGTGCTGGTGT
TCTGGTGAAACATGGAGATGGGTACAAGCTCATTCAGACAAATCGCCGTG
TCTTTAAACCGTCGAATGTGATCGACAGCAATTCTCCGGACCGAGCGAAA
CTCGTGAAAGCAAAAAAAGTTTGGCCAGCTACAATTGAGTTCTCTGCGTT
TGGGGTAGCCACCCTCTACATCAATGGAATCATATACAGCAAACTGTTCT
CACCTCATCCTTGGAAAATGTCTGTCGACCTCGCTCGAGGAGACGTCGTT
TCCATAAAGGCTGAGAAGACTGGGGTTTATGCAGGCGTGATGGTGACAAT
TCGTTGGAAAGGGCGCAAGATTCGATCAGGTCGAAATGTTTTCAAAGTGC
GAAGTGATAGCTACTATAGTTGGGAACCGGAGGAACAGGACTACTGGAAC
AGACCTCTGCGTGATAGTAATGGAATAATAAGGCCCTTGGCTGCCTTCTG
TTCTTGGAAAGATGCTGATATCGTGCACATCAAGAATCTCAGCTTCGATA
AGAGGGCGAAATTCATATGGAGTTTACATACCACTCACAACGATGATGAG
GAAATCAAAACACCTGCACAGACAGTTTACATTCGCCATGTAATGGGTGG
GCAGATGTGCGGAAATGATTCTCAAGAGAAGAAAATTAACAACAAGAAGA
ACAAGGGTGACACTGGCGGAGAGAAAAAGAACAAAGAGGAGAAAAAGAAC
CTTAAAAATTCAGGCGGTGAGCATCATGATGGAGCAACTCCGGGGCAAGC
GAAGAGCTCTGAAGAGAAAAATCAAGACAGCTTGAATGCCGGAGTTGGGG
GTCAGTCAGATACGAGGTTTTGCAAATGCAGAATTTCTTCTTTACGAGGA
GGCACTTGCTTCGATATGGTCACTCCGGGAGACGAAGAGGGTCCATGTAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:616798..617897-

>Gchil1241.t1 ID=Gchil1241.t1|Name=Gchil1241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00004437_pilon:616798..617897- (Gracilaria chilensis NLEC103_M9 male)
ATGAATGTGTTGAATGTCCATCGTCCAATACTGGACATAATTGCACTTCA
TCGACAGACTCTCGGACCCAGTGGAACGTCGTTCTACCTGCTTTATCCTC
TTAACCCCATTGCTTCTGGCATTATGAAGGTGTTTGCGTTTTTCACTTTT
ATCTCTCTTGTATCTCTGTGTTCGGCTCCCACAAGAGCTTGTGCTGGTGT
TCTGGTGAAACATGGAGATGGGTACAAGCTCATTCAGACAAATCGCCGTG
TCTTTAAACCGTCGAATGTGATCGACAGCAATTCTCCGGACCGAGCGAAA
CTCGTGAAAGCAAAAAAAGTTTGGCCAGCTACAATTGAGTTCTCTGCGTT
TGGGGTAGCCACCCTCTACATCAATGGAATCATATACAGCAAACTGTTCT
CACCTCATCCTTGGAAAATGTCTGTCGACCTCGCTCGAGGAGACGTCGTT
TCCATAAAGGCTGAGAAGACTGGGGTTTATGCAGGCGTGATGGTGACAAT
TCGTTGGAAAGGGCGCAAGATTCGATCAGGTCGAAATGTTTTCAAAGTGC
GAAGTGATAGCTACTATAGTTGGGAACCGGAGGAACAGGACTACTGGAAC
AGACCTCTGCGTGATAGTAATGGAATAATAAGGCCCTTGGCTGCCTTCTG
TTCTTGGAAAGATGCTGATATCGTGCACATCAAGAATCTCAGCTTCGATA
AGAGGGCGAAATTCATATGGAGTTTACATACCACTCACAACGATGATGAG
GAAATCAAAACACCTGCACAGACAGTTTACATTCGCCATGTAATGGGTGG
GCAGATGTGCGGAAATGATTCTCAAGAGAAGAAAATTAACAACAAGAAGA
ACAAGGGTGACACTGGCGGAGAGAAAAAGAACAAAGAGGAGAAAAAGAAC
CTTAAAAATTCAGGCGGTGAGCATCATGATGGAGCAACTCCGGGGCAAGC
GAAGAGCTCTGAAGAGAAAAATCAAGACAGCTTGAATGCCGGAGTTGGGG
GGTCCATGTAG
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