Gchil1240.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1240.t1
Unique NameGchil1240.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:614807..615794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO97810
PFAMsTRAP_alpha
Max annot lvl3041|Chlorophyta
KEGG koko:K13249
KEGG Pathwayko04141,map04141
KEGG ModuleM00402
Evalue1.7e-20
EggNOG OGsKOG1631@1|root,KOG1631@2759|Eukaryota,37K41@33090|Viridiplantae,34IE7@3041|Chlorophyta
DescriptionTranslocon-associated protein (TRAP), alpha subunit
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1240Gchil1240Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 614807..615794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1Gchil1240.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 614807..615794 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1.start1Gchil1240.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 614807..614809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1.CDS1Gchil1240.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 614807..614876 +
Gchil1240.t1.CDS2Gchil1240.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 614950..615794 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1.exon1Gchil1240.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 614807..614876 +
Gchil1240.t1.exon2Gchil1240.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 614950..615794 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1.intron1Gchil1240.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 614877..614949 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1240.t1.stop1Gchil1240.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 615792..615794 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1240.t1 ID=Gchil1240.t1|Name=Gchil1240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MQVRHSLFLFLVLLAVLIFTVAAEDTSLGDTSVDDTDHTAYTEDDRIARE
IEEEAAAAVEEAAEEEDDDDADALDEDADSARYDPERRHPLSDLPPPALD
VGIGHAFLTNFSETESKESDIVVTLGETVKTVIAFANHGRSPYHVWGTMG
SLNMKHNFRIHVQNFTYSMVNKTVAPDGELSFSYSFTPHERLDIRPFQLA
LTVFYEAQGSTGKAIRGHSTTFFNTTVATEPGPQSMSNGLFMLIVVFVCG
VSVGAFFLLKRMEDSKSAKPEMGTEDNSKNEWLEEHQAMMTGGGRARSRP
NAKR*
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spliced messenger RNA

>Gchil1240.t1 ID=Gchil1240.t1|Name=Gchil1240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004437_pilon:614807..615794+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTCCGTCATTCCTTATTCCTGTTCCTGGTTTTACTAGCGGTCCT
AATATTCACTGTCGCGGCGGAGGACACATCACTAGGAGACACATCAGTGG
ATGATACCGATCACACTGCATACACAGAAGATGATCGGATCGCCAGAGAG
ATCgaggaagaagcagcagccgctgtagaagaggcagccgaagaagaaga
cgacgatgatgcagaTGCGCTCGACGAAGATGCAGATTCCGCGCGATACG
ACCCAGAACGCCGCCATCCTTTATCCGATCTTCCGCCTCCCGCGCTGGAT
GTAGGCATAGGCCATGCGTTCCTTACCAACTTCTCAGAAACAGAGAGCAA
AGAAAGCGACATTGTGGTTACGCTTGGTGAAACTGTCAAAACTGTTATTG
CCTTTGCCAACCACGGCCGAAGTCCATATCACGTATGGGGCACTATGGGT
TCTCTCAACATGAAACACAATTTCAGAATTCATGTGCAGAATTTCACGTA
TAGCATGGTCAACAAAACAGTAGCACCGGACGGAGAGCTCAGTTTCTCAT
ATTCATTTACTCCGCACGAAAGGTTGGATATACGCCCTTTCCAACTAGCT
CTGACAGTGTTCTATGAGGCTCAGGGGTCTACTGGCAAAGCGATCCGAGG
TCATTCGACCACTTTCTTCAACACTACAGTAGCGACAGAGCCTGGTCCGC
AAAGCATGAGCAATGGACTTTTCATGCTAATTGTTGTGTTCGTTTGCGGT
GTGTCTGTTGGTGCTTTCTTCTTGTTAAAAAGGATGGAAGACTCAAAAAG
CGCAAAGCCTGAGATGGGTACCGAAGACAATTCTAAGAATGAGTGGCTTG
AAGAGCATCAAGCTATGATGACCGGCGGAGGCCGTGCCAGAAGTAGACCT
AACGCCAAGAGATAA
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protein sequence of Gchil1240.t1

>Gchil1240.t1 ID=Gchil1240.t1|Name=Gchil1240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MQVRHSLFLFLVLLAVLIFTVAAEDTSLGDTSVDDTDHTAYTEDDRIARE
IEEEAAAAVEEAAEEEDDDDADALDEDADSARYDPERRHPLSDLPPPALD
VGIGHAFLTNFSETESKESDIVVTLGETVKTVIAFANHGRSPYHVWGTMG
SLNMKHNFRIHVQNFTYSMVNKTVAPDGELSFSYSFTPHERLDIRPFQLA
LTVFYEAQGSTGKAIRGHSTTFFNTTVATEPGPQSMSNGLFMLIVVFVCG
VSVGAFFLLKRMEDSKSAKPEMGTEDNSKNEWLEEHQAMMTGGGRARSRP
NAKR*
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mRNA from alignment at tig00004437_pilon:614807..615794+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1240.t1 ID=Gchil1240.t1|Name=Gchil1240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=988bp|location=Sequence derived from alignment at tig00004437_pilon:614807..615794+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTCCGTCATTCCTTATTCCTGTTCCTGGTTTTACTAGCGGTCCT
AATATTCACTGTCGCGGCGGGTACGTGCATTTCATTTTTGTACATTTGAC
TCTCGTTCACTGACATGAGTGAGCGCTACGTTTATTCGAGTAGAGGACAC
ATCACTAGGAGACACATCAGTGGATGATACCGATCACACTGCATACACAG
AAGATGATCGGATCGCCAGAGAGATCgaggaagaagcagcagccgctgta
gaagaggcagccgaagaagaagacgacgatgatgcagaTGCGCTCGACGA
AGATGCAGATTCCGCGCGATACGACCCAGAACGCCGCCATCCTTTATCCG
ATCTTCCGCCTCCCGCGCTGGATGTAGGCATAGGCCATGCGTTCCTTACC
AACTTCTCAGAAACAGAGAGCAAAGAAAGCGACATTGTGGTTACGCTTGG
TGAAACTGTCAAAACTGTTATTGCCTTTGCCAACCACGGCCGAAGTCCAT
ATCACGTATGGGGCACTATGGGTTCTCTCAACATGAAACACAATTTCAGA
ATTCATGTGCAGAATTTCACGTATAGCATGGTCAACAAAACAGTAGCACC
GGACGGAGAGCTCAGTTTCTCATATTCATTTACTCCGCACGAAAGGTTGG
ATATACGCCCTTTCCAACTAGCTCTGACAGTGTTCTATGAGGCTCAGGGG
TCTACTGGCAAAGCGATCCGAGGTCATTCGACCACTTTCTTCAACACTAC
AGTAGCGACAGAGCCTGGTCCGCAAAGCATGAGCAATGGACTTTTCATGC
TAATTGTTGTGTTCGTTTGCGGTGTGTCTGTTGGTGCTTTCTTCTTGTTA
AAAAGGATGGAAGACTCAAAAAGCGCAAAGCCTGAGATGGGTACCGAAGA
CAATTCTAAGAATGAGTGGCTTGAAGAGCATCAAGCTATGATGACCGGCG
GAGGCCGTGCCAGAAGTAGACCTAACGCCAAGAGATAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:614807..615794+

>Gchil1240.t1 ID=Gchil1240.t1|Name=Gchil1240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00004437_pilon:614807..615794+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTCCGTCATTCCTTATTCCTGTTCCTGGTTTTACTAGCGGTCCT
AATATTCACTGTCGCGGCGGAGGACACATCACTAGGAGACACATCAGTGG
ATGATACCGATCACACTGCATACACAGAAGATGATCGGATCGCCAGAGAG
ATCgaggaagaagcagcagccgctgtagaagaggcagccgaagaagaaga
cgacgatgatgcagaTGCGCTCGACGAAGATGCAGATTCCGCGCGATACG
ACCCAGAACGCCGCCATCCTTTATCCGATCTTCCGCCTCCCGCGCTGGAT
GTAGGCATAGGCCATGCGTTCCTTACCAACTTCTCAGAAACAGAGAGCAA
AGAAAGCGACATTGTGGTTACGCTTGGTGAAACTGTCAAAACTGTTATTG
CCTTTGCCAACCACGGCCGAAGTCCATATCACGTATGGGGCACTATGGGT
TCTCTCAACATGAAACACAATTTCAGAATTCATGTGCAGAATTTCACGTA
TAGCATGGTCAACAAAACAGTAGCACCGGACGGAGAGCTCAGTTTCTCAT
ATTCATTTACTCCGCACGAAAGGTTGGATATACGCCCTTTCCAACTAGCT
CTGACAGTGTTCTATGAGGCTCAGGGGTCTACTGGCAAAGCGATCCGAGG
TCATTCGACCACTTTCTTCAACACTACAGTAGCGACAGAGCCTGGTCCGC
AAAGCATGAGCAATGGACTTTTCATGCTAATTGTTGTGTTCGTTTGCGGT
GTGTCTGTTGGTGCTTTCTTCTTGTTAAAAAGGATGGAAGACTCAAAAAG
CGCAAAGCCTGAGATGGGTACCGAAGACAATTCTAAGAATGAGTGGCTTG
AAGAGCATCAAGCTATGATGACCGGCGGAGGCCGTGCCAGAAGTAGACCT
AACGCCAAGAGATAA
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