Gchil1235.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1235.t1
Unique Name	Gchil1235.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:535099..536358 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15714205
Preferred name	HAT1
PFAMs	Hat1_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11303
KEGG Pathway	ko05034,map05034
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0007584,GO:0008080,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0009991,GO:0010485,GO:0016043,GO:0016363,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0022607,GO:0031055,GO:0031497,GO:0031667,GO:0031974,GO:0031981,GO:0032991,GO:0034080,GO:0034212,GO:0034399,GO:0034508,GO:0034622,GO:0034723,GO:0034724,GO:0034728,GO:0036211,GO:0042221,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0050896,GO:0051276,GO:0061641,GO:0061733,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:1901564
Evalue	9.42e-37
EggNOG OGs	KOG2696@1\|root,KOG2696@2759\|Eukaryota,38YSJ@33154\|Opisthokonta,3BG94@33208\|Metazoa
EC	2.3.1.48
Description	chromatin silencing at telomere
COG category	B
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1235	Gchil1235	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 535099..536358 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1235.t1.start1	Gchil1235.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 535099..535101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1235.t1.CDS1	Gchil1235.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 535099..536358 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1235.t1.exon1	Gchil1235.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 535099..536358 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1235.t1.stop1	Gchil1235.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 536356..536358 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1235.t1	Gchil1235.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 535099..536358 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:535099..536358+
coding sequence from alignment at tig00004437_pilon:535099..536358+

mRNA sequence

>Gchil1235.t1 ID=Gchil1235.t1|Name=Gchil1235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp
MAGALPQSPARKRVRFNAATEPDTHRPSIPARECVQLRFVPSDTSIPSSP
LDSYDRHLTFVPSFLHQIVPHESVYGWDSIRVVVYVHMPTLATWIDSVGE
RSEADPGAETTDVPALLAPFIKDGLCASRSAFEAVMSAEPSSLPFGNQIT
SYSADGARFGIFKEKFWFQDESGVAAPNTTLLAFHHRMAFLMFVHIDDAS
FIDVEDERWELFAIARLENDRPIQFVAYSTVYPFSALASGDGPMRFAERI
RISQVFVQPMFQRSGHGSRLLNAIYDDSQDRKALQITVEDPSPGFRLLRD
VTDLRRAYDARILDADLPLDLSEEKNLVVNLGEKLLLTPGQARRCIEVHQ
LRHTDRSDEEVYKKYRLWVKRRLLKANIETLDQYDKDERKEKIAEIYADL
EMEYDTAILRIRYRSTKKR*

spliced messenger RNA

>Gchil1235.t1 ID=Gchil1235.t1|Name=Gchil1235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004437_pilon:535099..536358+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGCGCCTTGCCACAATCGCCCGCGCGCAAACGCGTTCGCTTCAA
CGCGGCGACCGAGCCCGATACGCACAGGCCGAGCATACCGGCTCGCGAAT
GTGTGCAGTTGCGTTTCGTTCCTTCAGACACTTCGATACCATCATCGCCG
CTCGATTCATACGATAGACACCTTACATTCGTGCCTTCCTTTTTGCATCA
GATCGTGCCGCACGAGAGCGTTTACGGATGGGATAGTATTCGTGTTGTGG
TGTACGTGCATATGCCAACACTCGCAACATGGATCGATAGTGTTGGAGAA
CGATCGGAGGCGGACCCTGGTGCAGAGACCACGGATGTGCCGGCGCTGCT
TGCACCATTCATAAAGGACGGCTTGTGCGCATCGCGCTCGGCGTTCGAAG
CTGTTATGAGTGCCGAGCCATCCTCGCTACCTTTTGGTAATCAGATAACT
TCTTACAGTGCGGACGGAGCTCGCTTTGGCATCTTCAAGGAAAAGTTTTG
GTTTCAGGATGAGTCTGGCGTGGCCGCTCCGAACACTACTCTGCTTGCTT
TTCATCATAGAATGGCATTTCTCATGTTTGTTCACATTGACGATGCTTCG
TTTATTGACGTGGAGGATGAACGCTGGGAATTATTTGCCATCGCACGTTT
GGAGAACGATCGTCCAATTCAGTTCGTTGCTTACTCAACCGTGTACCCGT
TCTCAGCATTGGCATCTGGAGATGGACCGATGCGTTTTGCTGAGCGAATT
CGCATAAGCCAAGTGTTTGTTCAGCCCATGTTTCAGCGTAGCGGACATGG
ATCAAGGCTGCTCAACGCCATCTATGACGACTCTCAAGATAGAAAAGCGT
TACAAATCACCGTTGAGGATCCCAGTCCTGGCTTCCGTCTGTTGCGCGAC
GTCACAGACCTGCGGCGCGCATACGATGCACGAATTTTAGACGCTGATCT
TCCCCTAGATTTGAGTGAGGAGAAAAACCTAGTGGTTAATTTGGGCGAAA
AGTTACTGTTAACTCCTGGTCAGGCTCGGCGCTGTATTGAAGTCCATCAA
TTACGACATACGGATCGATCTGACGAAGAAGTGTATAAAAAGTATCGTCT
GTGGGTGAAACGTCGATTGTTGAAAGCAAATATTGAAACGCTTGATCAAT
ATGACAAGGATGAGCGAAAAGAGAAAATAGCTGAGATTTACGCTGACTTA
GAGATGGAATACGACACAGCCATTCTTCGTATAAGGTATCGTTCCACCAA
AAAGCGGTGA

protein sequence of Gchil1235.t1

>Gchil1235.t1 ID=Gchil1235.t1|Name=Gchil1235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=420bp
MAGALPQSPARKRVRFNAATEPDTHRPSIPARECVQLRFVPSDTSIPSSP
LDSYDRHLTFVPSFLHQIVPHESVYGWDSIRVVVYVHMPTLATWIDSVGE
RSEADPGAETTDVPALLAPFIKDGLCASRSAFEAVMSAEPSSLPFGNQIT
SYSADGARFGIFKEKFWFQDESGVAAPNTTLLAFHHRMAFLMFVHIDDAS
FIDVEDERWELFAIARLENDRPIQFVAYSTVYPFSALASGDGPMRFAERI
RISQVFVQPMFQRSGHGSRLLNAIYDDSQDRKALQITVEDPSPGFRLLRD
VTDLRRAYDARILDADLPLDLSEEKNLVVNLGEKLLLTPGQARRCIEVHQ
LRHTDRSDEEVYKKYRLWVKRRLLKANIETLDQYDKDERKEKIAEIYADL
EMEYDTAILRIRYRSTKKR*

mRNA from alignment at tig00004437_pilon:535099..536358+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1235.t1 ID=Gchil1235.t1|Name=Gchil1235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00004437_pilon:535099..536358+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCGCCTTGCCACAATCGCCCGCGCGCAAACGCGTTCGCTTCAA
CGCGGCGACCGAGCCCGATACGCACAGGCCGAGCATACCGGCTCGCGAAT
GTGTGCAGTTGCGTTTCGTTCCTTCAGACACTTCGATACCATCATCGCCG
CTCGATTCATACGATAGACACCTTACATTCGTGCCTTCCTTTTTGCATCA
GATCGTGCCGCACGAGAGCGTTTACGGATGGGATAGTATTCGTGTTGTGG
TGTACGTGCATATGCCAACACTCGCAACATGGATCGATAGTGTTGGAGAA
CGATCGGAGGCGGACCCTGGTGCAGAGACCACGGATGTGCCGGCGCTGCT
TGCACCATTCATAAAGGACGGCTTGTGCGCATCGCGCTCGGCGTTCGAAG
CTGTTATGAGTGCCGAGCCATCCTCGCTACCTTTTGGTAATCAGATAACT
TCTTACAGTGCGGACGGAGCTCGCTTTGGCATCTTCAAGGAAAAGTTTTG
GTTTCAGGATGAGTCTGGCGTGGCCGCTCCGAACACTACTCTGCTTGCTT
TTCATCATAGAATGGCATTTCTCATGTTTGTTCACATTGACGATGCTTCG
TTTATTGACGTGGAGGATGAACGCTGGGAATTATTTGCCATCGCACGTTT
GGAGAACGATCGTCCAATTCAGTTCGTTGCTTACTCAACCGTGTACCCGT
TCTCAGCATTGGCATCTGGAGATGGACCGATGCGTTTTGCTGAGCGAATT
CGCATAAGCCAAGTGTTTGTTCAGCCCATGTTTCAGCGTAGCGGACATGG
ATCAAGGCTGCTCAACGCCATCTATGACGACTCTCAAGATAGAAAAGCGT
TACAAATCACCGTTGAGGATCCCAGTCCTGGCTTCCGTCTGTTGCGCGAC
GTCACAGACCTGCGGCGCGCATACGATGCACGAATTTTAGACGCTGATCT
TCCCCTAGATTTGAGTGAGGAGAAAAACCTAGTGGTTAATTTGGGCGAAA
AGTTACTGTTAACTCCTGGTCAGGCTCGGCGCTGTATTGAAGTCCATCAA
TTACGACATACGGATCGATCTGACGAAGAAGTGTATAAAAAGTATCGTCT
GTGGGTGAAACGTCGATTGTTGAAAGCAAATATTGAAACGCTTGATCAAT
ATGACAAGGATGAGCGAAAAGAGAAAATAGCTGAGATTTACGCTGACTTA
GAGATGGAATACGACACAGCCATTCTTCGTATAAGGTATCGTTCCACCAA
AAAGCGGTGA

Coding sequence (CDS) from alignment at tig00004437_pilon:535099..536358+

>Gchil1235.t1 ID=Gchil1235.t1|Name=Gchil1235.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00004437_pilon:535099..536358+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGGCGCCTTGCCACAATCGCCCGCGCGCAAACGCGTTCGCTTCAA
CGCGGCGACCGAGCCCGATACGCACAGGCCGAGCATACCGGCTCGCGAAT
GTGTGCAGTTGCGTTTCGTTCCTTCAGACACTTCGATACCATCATCGCCG
CTCGATTCATACGATAGACACCTTACATTCGTGCCTTCCTTTTTGCATCA
GATCGTGCCGCACGAGAGCGTTTACGGATGGGATAGTATTCGTGTTGTGG
TGTACGTGCATATGCCAACACTCGCAACATGGATCGATAGTGTTGGAGAA
CGATCGGAGGCGGACCCTGGTGCAGAGACCACGGATGTGCCGGCGCTGCT
TGCACCATTCATAAAGGACGGCTTGTGCGCATCGCGCTCGGCGTTCGAAG
CTGTTATGAGTGCCGAGCCATCCTCGCTACCTTTTGGTAATCAGATAACT
TCTTACAGTGCGGACGGAGCTCGCTTTGGCATCTTCAAGGAAAAGTTTTG
GTTTCAGGATGAGTCTGGCGTGGCCGCTCCGAACACTACTCTGCTTGCTT
TTCATCATAGAATGGCATTTCTCATGTTTGTTCACATTGACGATGCTTCG
TTTATTGACGTGGAGGATGAACGCTGGGAATTATTTGCCATCGCACGTTT
GGAGAACGATCGTCCAATTCAGTTCGTTGCTTACTCAACCGTGTACCCGT
TCTCAGCATTGGCATCTGGAGATGGACCGATGCGTTTTGCTGAGCGAATT
CGCATAAGCCAAGTGTTTGTTCAGCCCATGTTTCAGCGTAGCGGACATGG
ATCAAGGCTGCTCAACGCCATCTATGACGACTCTCAAGATAGAAAAGCGT
TACAAATCACCGTTGAGGATCCCAGTCCTGGCTTCCGTCTGTTGCGCGAC
GTCACAGACCTGCGGCGCGCATACGATGCACGAATTTTAGACGCTGATCT
TCCCCTAGATTTGAGTGAGGAGAAAAACCTAGTGGTTAATTTGGGCGAAA
AGTTACTGTTAACTCCTGGTCAGGCTCGGCGCTGTATTGAAGTCCATCAA
TTACGACATACGGATCGATCTGACGAAGAAGTGTATAAAAAGTATCGTCT
GTGGGTGAAACGTCGATTGTTGAAAGCAAATATTGAAACGCTTGATCAAT
ATGACAAGGATGAGCGAAAAGAGAAAATAGCTGAGATTTACGCTGACTTA
GAGATGGAATACGACACAGCCATTCTTCGTATAAGGTATCGTTCCACCAA
AAAGCGGTGA