Gchil1233.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1233.t2
Unique NameGchil1233.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:531529..532412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090M7M5
PFAMsPHO4
Max annot lvl3041|Chlorophyta
KEGG koko:K14640
KEGG TC2.A.20.2
Evalue5.46e-47
EggNOG OGsCOG0306@1|root,KOG2493@2759|Eukaryota,37MAB@33090|Viridiplantae,34GRK@3041|Chlorophyta
DescriptionSodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1233Gchil1233Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 530478..532412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2Gchil1233.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 531529..532412 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2.stop1Gchil1233.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 531529..531531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2.CDS1Gchil1233.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 531529..531558 -
Gchil1233.t2.CDS2Gchil1233.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 531615..532412 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2.exon1Gchil1233.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 531529..531558 -
Gchil1233.t2.exon2Gchil1233.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 531615..532412 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2.intron1Gchil1233.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 531559..531614 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1233.t2.start1Gchil1233.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 532410..532412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1233.t2 ID=Gchil1233.t2|Name=Gchil1233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MADGFNWPLLDMYKVADGVVIDSVQKYLWIVIVGGILAFLMAWGIGANDV
ANAFATSVGAGSLDLKWACVIAAVMEFLGALLLGGGVTDTVRKKIIKADV
FNPLDSGGTSNGPELLMTGFLVALITATTWLVAATYFSLPVSTTHSIIGS
LVGVGLAFRGGEAVVWISDGSGFGKLNGLVGVILSWIISPVLSAILAIIM
FLIVRTLVLRRKEPLKAGLLFMPLFYGITFSVTIFFIIFKGDKRFNISKK
LSLGAAIGIALGAGAVMGCTPKGAR*
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spliced messenger RNA

>Gchil1233.t2 ID=Gchil1233.t2|Name=Gchil1233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004437_pilon:531529..532412- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACGGTTTCAACTGGCCTCTGCTCGATATGTACAAGGTCGCTGA
TGGTGTTGTTATTGACTCCGTCCAAAAGTACCTATGGATTGTGATCGTTG
GTGGCATTCTCGCCTTTTTAATGGCCTGGGGCATTGGTGCAAATGATGTA
GCCAATGCCTTCGCTACCTCTGTCGGTGCCGGTTCTTTGGACCTGAAGTG
GGCTTGCGTTATTGCCGCCGTGATGGAATTCCTTGGTGCTCTTTTGCTCG
GTGGCGGTGTCACTGATACCGTCCGCAAGAAGATTATCAAGGCTGATGTT
TTCAACCCTCTCGACTCTGGCGGTACTTCCAACGGCCCGGAGCTTCTCAT
GACTGGTTTCCTGGTTGCCCTCATCACTGCCACGACCTGGTTGGTTGCCG
CCACCTACTTTTCTCTCCCGGTCTCCACCACCCATTCCATAATTGGCTCC
CTCGTTGGAGTTGGTCTCGCTTTCCGTGGTGGCGAGGCTGTCGTCTGGAT
CTCAGACGGTTCTGGCTTCGGCAAGCTCAATGGTCTCGTTGGTGTCATCC
TCTCCTGGATCATCTCCCCTGTGCTTTCAGCCATTCTCGCTATCATCATG
TTCTTGATCGTCCGTACCCTTGTCCTCCGCCGCAAGGAGCCCCTCAAGGC
CGGTCTCCTGTTCATGCCGCTCTTCTACGGTATTACCTTCTCCGTCACAA
TTTTCTTCATCATCTTCAAGGGTGACAAGCGTTTCAATATCAGCAAGAAG
CTTTCTCTCGGAGCGGCGATCGGAATCGCTCTCGGTGCTGGTGCCGTTAT
GGGATGCACGCCAAAAGGAGCTCGCTGA
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protein sequence of Gchil1233.t2

>Gchil1233.t2 ID=Gchil1233.t2|Name=Gchil1233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MADGFNWPLLDMYKVADGVVIDSVQKYLWIVIVGGILAFLMAWGIGANDV
ANAFATSVGAGSLDLKWACVIAAVMEFLGALLLGGGVTDTVRKKIIKADV
FNPLDSGGTSNGPELLMTGFLVALITATTWLVAATYFSLPVSTTHSIIGS
LVGVGLAFRGGEAVVWISDGSGFGKLNGLVGVILSWIISPVLSAILAIIM
FLIVRTLVLRRKEPLKAGLLFMPLFYGITFSVTIFFIIFKGDKRFNISKK
LSLGAAIGIALGAGAVMGCTPKGAR*
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mRNA from alignment at tig00004437_pilon:531529..532412-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1233.t2 ID=Gchil1233.t2|Name=Gchil1233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=884bp|location=Sequence derived from alignment at tig00004437_pilon:531529..532412- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACGGTTTCAACTGGCCTCTGCTCGATATGTACAAGGTCGCTGA
TGGTGTTGTTATTGACTCCGTCCAAAAGTACCTATGGATTGTGATCGTTG
GTGGCATTCTCGCCTTTTTAATGGCCTGGGGCATTGGTGCAAATGATGTA
GCCAATGCCTTCGCTACCTCTGTCGGTGCCGGTTCTTTGGACCTGAAGTG
GGCTTGCGTTATTGCCGCCGTGATGGAATTCCTTGGTGCTCTTTTGCTCG
GTGGCGGTGTCACTGATACCGTCCGCAAGAAGATTATCAAGGCTGATGTT
TTCAACCCTCTCGACTCTGGCGGTACTTCCAACGGCCCGGAGCTTCTCAT
GACTGGTTTCCTGGTTGCCCTCATCACTGCCACGACCTGGTTGGTTGCCG
CCACCTACTTTTCTCTCCCGGTCTCCACCACCCATTCCATAATTGGCTCC
CTCGTTGGAGTTGGTCTCGCTTTCCGTGGTGGCGAGGCTGTCGTCTGGAT
CTCAGACGGTTCTGGCTTCGGCAAGCTCAATGGTCTCGTTGGTGTCATCC
TCTCCTGGATCATCTCCCCTGTGCTTTCAGCCATTCTCGCTATCATCATG
TTCTTGATCGTCCGTACCCTTGTCCTCCGCCGCAAGGAGCCCCTCAAGGC
CGGTCTCCTGTTCATGCCGCTCTTCTACGGTATTACCTTCTCCGTCACAA
TTTTCTTCATCATCTTCAAGGGTGACAAGCGTTTCAATATCAGCAAGAAG
CTTTCTCTCGGAGCGGCGATCGGAATCGCTCTCGGTGCTGGTGCCGTTGT
TGCCTTCGTCTCCTTCTTCACCATTGTTCCGCTTGCCAAGAAATACGTTA
ACAGATGGGATGCACGCCAAAAGGAGCTCGCTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:531529..532412-

>Gchil1233.t2 ID=Gchil1233.t2|Name=Gchil1233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004437_pilon:531529..532412- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACGGTTTCAACTGGCCTCTGCTCGATATGTACAAGGTCGCTGA
TGGTGTTGTTATTGACTCCGTCCAAAAGTACCTATGGATTGTGATCGTTG
GTGGCATTCTCGCCTTTTTAATGGCCTGGGGCATTGGTGCAAATGATGTA
GCCAATGCCTTCGCTACCTCTGTCGGTGCCGGTTCTTTGGACCTGAAGTG
GGCTTGCGTTATTGCCGCCGTGATGGAATTCCTTGGTGCTCTTTTGCTCG
GTGGCGGTGTCACTGATACCGTCCGCAAGAAGATTATCAAGGCTGATGTT
TTCAACCCTCTCGACTCTGGCGGTACTTCCAACGGCCCGGAGCTTCTCAT
GACTGGTTTCCTGGTTGCCCTCATCACTGCCACGACCTGGTTGGTTGCCG
CCACCTACTTTTCTCTCCCGGTCTCCACCACCCATTCCATAATTGGCTCC
CTCGTTGGAGTTGGTCTCGCTTTCCGTGGTGGCGAGGCTGTCGTCTGGAT
CTCAGACGGTTCTGGCTTCGGCAAGCTCAATGGTCTCGTTGGTGTCATCC
TCTCCTGGATCATCTCCCCTGTGCTTTCAGCCATTCTCGCTATCATCATG
TTCTTGATCGTCCGTACCCTTGTCCTCCGCCGCAAGGAGCCCCTCAAGGC
CGGTCTCCTGTTCATGCCGCTCTTCTACGGTATTACCTTCTCCGTCACAA
TTTTCTTCATCATCTTCAAGGGTGACAAGCGTTTCAATATCAGCAAGAAG
CTTTCTCTCGGAGCGGCGATCGGAATCGCTCTCGGTGCTGGTGCCGTTAT
GGGATGCACGCCAAAAGGAGCTCGCTGA
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