Gchil1232.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1232.t1
Unique NameGchil1232.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:495154..495744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1232Gchil1232Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 495154..495744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1Gchil1232.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 495154..495744 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1.stop1Gchil1232.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 495154..495156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1.CDS1Gchil1232.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 495154..495488 -
Gchil1232.t1.CDS2Gchil1232.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 495546..495744 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1.exon1Gchil1232.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 495154..495488 -
Gchil1232.t1.exon2Gchil1232.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 495546..495744 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1.intron1Gchil1232.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 495489..495545 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1232.t1.start1Gchil1232.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 495742..495744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1232.t1 ID=Gchil1232.t1|Name=Gchil1232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MEDELGALQALCIPIGETSPANMAQSLVFYCVWLRLMVVAEGALRRATKS
QGDLVGVILEHAAKGFEAPLPLWTAPGLMDVQEAACKELDKLHAVESQTV
FTMRELWEASLRFAESGMSFNPSAAVLEVAPQRSGAQPDGEIQVELPGGR
AAIAAAVPSCESPGPGEVAKWLEGKGG*
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spliced messenger RNA

>Gchil1232.t1 ID=Gchil1232.t1|Name=Gchil1232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004437_pilon:495154..495744- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACGAACTGGGAGCACTCCAGGCTCTCTGCATACCGATTGGTGA
AACCAGCCCTGCCAATATGGCGCAGTCCCTGGTGTTTTATTGTGTATGGT
TGCGCCTTATGGTTGTCGCGGAGGGTGCGCTGCGACGTGCGACAAAGAGC
CAGGGTGACCTGGTCGGGGTCATACTCGAGCATGCCGCGAAGGGATTCGA
GGCTCCACTTCCGTTATGGACGGCCCCGGGGTTGATGGATGTTCAAGAAG
CCGCGTGTAAAGAGTTGGATAAGCTTCATGCGGTAGAGAGCCAAACGGTG
TTCACGATGAGGGAGCTATGGGAAGCGTCCTTGCGGTTTGCCGAAAGCGG
TATGTCGTTCAATCCCAGCGCGGCCGTGCTTGAGGTGGCACCTCAACGGA
GTGGGGCGCAACCGGATGGGGAAATACAGGTGGAATTGCCCGGTGGCAGG
GCAGCCATTGCGGCAGCGGTTCCGTCCTGTGAATCGCCCGGCCCTGGAGA
GGTTGCAAAGTGGTTAGAGGGGAAGGGGGGCTAG
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protein sequence of Gchil1232.t1

>Gchil1232.t1 ID=Gchil1232.t1|Name=Gchil1232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MEDELGALQALCIPIGETSPANMAQSLVFYCVWLRLMVVAEGALRRATKS
QGDLVGVILEHAAKGFEAPLPLWTAPGLMDVQEAACKELDKLHAVESQTV
FTMRELWEASLRFAESGMSFNPSAAVLEVAPQRSGAQPDGEIQVELPGGR
AAIAAAVPSCESPGPGEVAKWLEGKGG*
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mRNA from alignment at tig00004437_pilon:495154..495744-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1232.t1 ID=Gchil1232.t1|Name=Gchil1232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00004437_pilon:495154..495744- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACGAACTGGGAGCACTCCAGGCTCTCTGCATACCGATTGGTGA
AACCAGCCCTGCCAATATGGCGCAGTCCCTGGTGTTTTATTGTGTATGGT
TGCGCCTTATGGTTGTCGCGGAGGGTGCGCTGCGACGTGCGACAAAGAGC
CAGGGTGACCTGGTCGGGGTCATACTCGAGCATGCCGCGAAGGGATTCGG
TCAGTACTGCAAGGCTATTCAAGCTTTTGGCTAGGACGTGCCTGCCATAT
CGGTAGAGGCTCCACTTCCGTTATGGACGGCCCCGGGGTTGATGGATGTT
CAAGAAGCCGCGTGTAAAGAGTTGGATAAGCTTCATGCGGTAGAGAGCCA
AACGGTGTTCACGATGAGGGAGCTATGGGAAGCGTCCTTGCGGTTTGCCG
AAAGCGGTATGTCGTTCAATCCCAGCGCGGCCGTGCTTGAGGTGGCACCT
CAACGGAGTGGGGCGCAACCGGATGGGGAAATACAGGTGGAATTGCCCGG
TGGCAGGGCAGCCATTGCGGCAGCGGTTCCGTCCTGTGAATCGCCCGGCC
CTGGAGAGGTTGCAAAGTGGTTAGAGGGGAAGGGGGGCTAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:495154..495744-

>Gchil1232.t1 ID=Gchil1232.t1|Name=Gchil1232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004437_pilon:495154..495744- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACGAACTGGGAGCACTCCAGGCTCTCTGCATACCGATTGGTGA
AACCAGCCCTGCCAATATGGCGCAGTCCCTGGTGTTTTATTGTGTATGGT
TGCGCCTTATGGTTGTCGCGGAGGGTGCGCTGCGACGTGCGACAAAGAGC
CAGGGTGACCTGGTCGGGGTCATACTCGAGCATGCCGCGAAGGGATTCGA
GGCTCCACTTCCGTTATGGACGGCCCCGGGGTTGATGGATGTTCAAGAAG
CCGCGTGTAAAGAGTTGGATAAGCTTCATGCGGTAGAGAGCCAAACGGTG
TTCACGATGAGGGAGCTATGGGAAGCGTCCTTGCGGTTTGCCGAAAGCGG
TATGTCGTTCAATCCCAGCGCGGCCGTGCTTGAGGTGGCACCTCAACGGA
GTGGGGCGCAACCGGATGGGGAAATACAGGTGGAATTGCCCGGTGGCAGG
GCAGCCATTGCGGCAGCGGTTCCGTCCTGTGAATCGCCCGGCCCTGGAGA
GGTTGCAAAGTGGTTAGAGGGGAAGGGGGGCTAG
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