Gchil1231.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1231.t1
Unique Name	Gchil1231.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:452311..453954 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707757.1
Preferred name	GLE1
PFAMs	GLE1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18723
KEGG TC	1.I.1
GOs	GO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
Evalue	2.82e-47
EggNOG OGs	KOG2412@1\|root,KOG2412@2759\|Eukaryota
Description	inositol hexakisphosphate binding
COG category	Z
BRITE	ko00000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1231	Gchil1231	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 452311..453954 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1231.t1.stop1	Gchil1231.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 452311..452313 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1231.t1.CDS1	Gchil1231.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 452311..453954 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1231.t1.exon1	Gchil1231.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 452311..453954 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1231.t1.start1	Gchil1231.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 453952..453954 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1231.t1	Gchil1231.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 452311..453954 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:452311..453954-
coding sequence from alignment at tig00004437_pilon:452311..453954-

mRNA sequence

>Gchil1231.t1 ID=Gchil1231.t1|Name=Gchil1231.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=548bp
MTAASVYSPLKPSVLSSKTNKSLLKPNSRQEALQLWVRHGLEVSSRSATL
MSKWNSYHTAAKHDHQRLIASYDVALPSYTRTTPARTLRVSCLSIKRDEG
KRTSLRVLRRSKIDIIAQREEAERLKREREMRLQRESEIALQRAQAELRA
AAAESAASIAEEKDRAKSRTEHVGRKSEGEPSVFPEAQSALERAGTHDEE
ADHSEEVLEKRPSAMQYSPAIEGERKQTAKSQKLNPESTDQDALLKQAED
GLRIWGEVSAEAEQFKNNPSLKRTRLTFKKQVNLAVNQIAASIKQVWRKV
VDLSKIVAELKANYSTVGESFAMKMIAERLISESDGSAALSKTTAFAVAS
AIVGLTASVENVSKFRYIFLGAFHDHCIYTIPRYEKRRQGESIDHYKSRI
GYKEDEDSESYLERMCGCINLFAAVVQTEDVYTAQRASGVRNPFPLSWVW
CILARLCNKEQRSITPSIVYAFLEIAGFRLSQEYGSQFKKLMYSISEAVV
KRAIKSAPRGPTTRLEIFVEDFQRGGFVVRTPPEGRRLPRSDAENTV*

spliced messenger RNA

>Gchil1231.t1 ID=Gchil1231.t1|Name=Gchil1231.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00004437_pilon:452311..453954- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTGCTAGTGTCTACTCCCCTTTGAAGCCATCCGTGTTATCATC
AAAGACAAACAAATCTCTATTGAAACCAAACTCTAGACAGGAAGCCCTGC
AACTATGGGTGCGTCATGGGCTCGAAGTGTCAAGTCGGTCCGCGACGTTG
ATGTCTAAATGGAATTCGTATCACACCGCGGCAAAACACGATCACCAACG
GCTGATTGCCTCCTACGATGTTGCCCTACCATCATACACCCGAACAACGC
CTGCAAGGACTTTGCGTGTCTCTTGTTTGAGTATTAAGCGTGATGAAGGC
AAGCGAACCTCACTGCGAGTTCTGAGAAGATCGAAAATAGATATAATAGC
CCAACGAGAAGAAGCAGAACGGCTGAAACGAGAAAGGGAAATGAGGCTTC
AGAGAGAAAGCGAGATTGCTCTTCAGCGCGCTCAAGCAGAGTTAAGGGCT
GCAGCTGCAGAAAGCGCAGCATCAATTGCAGAAGAAAAGGACAGGGCAAA
ATCACGTACAGAACACGTTGGACGGAAAAGTGAAGGGGAACCCAGTGTAT
TCCCGGAAGCCCAATCAGCGTTGGAAAGGGCTGGAACACATGATGAGGAA
GCAGATCATTCGGAAGAGGTACTGGAAAAAAGGCCAAGCGCTATGCAGTA
CTCACCCGCGATCGAAGGTGAGAGGAAACAAACCGCAAAATCGCAGAAGC
TAAACCCTGAAAGTACAGATCAGGACGCTCTTCTAAAACAGGCTGAAGAT
GGGCTTCGTATTTGGGGAGAGGTATCCGCAGAGGCGGAGCAGTTTAAAAA
CAATCCATCCTTGAAAAGAACACGGCTCACTTTTAAGAAGCAAGTCAACC
TTGCCGTCAATCAGATCGCTGCCAGTATAAAACAAGTTTGGCGGAAAGTG
GTAGATCTATCTAAGATCGTCGCTGAACTGAAAGCCAACTATAGTACTGT
GGGCGAGTCATTTGCCATGAAAATGATCGCTGAGCGCTTAATTAGTGAGT
CTGACGGGAGTGCCGCTCTCAGCAAAACAACTGCGTTTGCGGTTGCCTCC
GCGATAGTTGGACTGACAGCCAGCGTCGAAAATGTGAGTAAGTTCAGATA
CATATTTTTGGGGGCTTTCCACGACCACTGTATATATACGATTCCGAGGT
ACGAAAAGAGGAGACAAGGAGAATCGATTGACCATTACAAATCCCGTATT
GGTTACAAAGAAGACGAGGATTCGGAAAGCTATCTTGAACGTATGTGTGG
CTGTATCAATCTATTCGCGGCCGTCGTACAAACCGAAGACGTGTACACGG
CACAGAGAGCTTCCGGAGTTCGAAATCCATTCCCGCTTTCATGGGTGTGG
TGCATTTTGGCGCGGCTGTGCAACAAAGAGCAGAGGAGCATCACGCCCTC
AATCGTTTATGCTTTTCTAGAAATCGCTGGTTTCCGCCTTTCGCAGGAGT
ATGGTTCACAGTTTAAGAAGCTAATGTACAGCATCAGCGAGGCGGTCGTC
AAAAGAGCGATAAAGTCTGCGCCACGAGGACCGACCACAAGGCTTGAGAT
TTTCGTGGAAGACTTCCAGCGGGGTGGATTCGTTGTTCGCACACCGCCTG
AAGGCCGGAGGCTGCCTAGATCAGATGCTGAAAACACCGTCTGA

protein sequence of Gchil1231.t1

>Gchil1231.t1 ID=Gchil1231.t1|Name=Gchil1231.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=548bp
MTAASVYSPLKPSVLSSKTNKSLLKPNSRQEALQLWVRHGLEVSSRSATL
MSKWNSYHTAAKHDHQRLIASYDVALPSYTRTTPARTLRVSCLSIKRDEG
KRTSLRVLRRSKIDIIAQREEAERLKREREMRLQRESEIALQRAQAELRA
AAAESAASIAEEKDRAKSRTEHVGRKSEGEPSVFPEAQSALERAGTHDEE
ADHSEEVLEKRPSAMQYSPAIEGERKQTAKSQKLNPESTDQDALLKQAED
GLRIWGEVSAEAEQFKNNPSLKRTRLTFKKQVNLAVNQIAASIKQVWRKV
VDLSKIVAELKANYSTVGESFAMKMIAERLISESDGSAALSKTTAFAVAS
AIVGLTASVENVSKFRYIFLGAFHDHCIYTIPRYEKRRQGESIDHYKSRI
GYKEDEDSESYLERMCGCINLFAAVVQTEDVYTAQRASGVRNPFPLSWVW
CILARLCNKEQRSITPSIVYAFLEIAGFRLSQEYGSQFKKLMYSISEAVV
KRAIKSAPRGPTTRLEIFVEDFQRGGFVVRTPPEGRRLPRSDAENTV*

mRNA from alignment at tig00004437_pilon:452311..453954-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1231.t1 ID=Gchil1231.t1|Name=Gchil1231.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00004437_pilon:452311..453954- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGCTAGTGTCTACTCCCCTTTGAAGCCATCCGTGTTATCATC
AAAGACAAACAAATCTCTATTGAAACCAAACTCTAGACAGGAAGCCCTGC
AACTATGGGTGCGTCATGGGCTCGAAGTGTCAAGTCGGTCCGCGACGTTG
ATGTCTAAATGGAATTCGTATCACACCGCGGCAAAACACGATCACCAACG
GCTGATTGCCTCCTACGATGTTGCCCTACCATCATACACCCGAACAACGC
CTGCAAGGACTTTGCGTGTCTCTTGTTTGAGTATTAAGCGTGATGAAGGC
AAGCGAACCTCACTGCGAGTTCTGAGAAGATCGAAAATAGATATAATAGC
CCAACGAGAAGAAGCAGAACGGCTGAAACGAGAAAGGGAAATGAGGCTTC
AGAGAGAAAGCGAGATTGCTCTTCAGCGCGCTCAAGCAGAGTTAAGGGCT
GCAGCTGCAGAAAGCGCAGCATCAATTGCAGAAGAAAAGGACAGGGCAAA
ATCACGTACAGAACACGTTGGACGGAAAAGTGAAGGGGAACCCAGTGTAT
TCCCGGAAGCCCAATCAGCGTTGGAAAGGGCTGGAACACATGATGAGGAA
GCAGATCATTCGGAAGAGGTACTGGAAAAAAGGCCAAGCGCTATGCAGTA
CTCACCCGCGATCGAAGGTGAGAGGAAACAAACCGCAAAATCGCAGAAGC
TAAACCCTGAAAGTACAGATCAGGACGCTCTTCTAAAACAGGCTGAAGAT
GGGCTTCGTATTTGGGGAGAGGTATCCGCAGAGGCGGAGCAGTTTAAAAA
CAATCCATCCTTGAAAAGAACACGGCTCACTTTTAAGAAGCAAGTCAACC
TTGCCGTCAATCAGATCGCTGCCAGTATAAAACAAGTTTGGCGGAAAGTG
GTAGATCTATCTAAGATCGTCGCTGAACTGAAAGCCAACTATAGTACTGT
GGGCGAGTCATTTGCCATGAAAATGATCGCTGAGCGCTTAATTAGTGAGT
CTGACGGGAGTGCCGCTCTCAGCAAAACAACTGCGTTTGCGGTTGCCTCC
GCGATAGTTGGACTGACAGCCAGCGTCGAAAATGTGAGTAAGTTCAGATA
CATATTTTTGGGGGCTTTCCACGACCACTGTATATATACGATTCCGAGGT
ACGAAAAGAGGAGACAAGGAGAATCGATTGACCATTACAAATCCCGTATT
GGTTACAAAGAAGACGAGGATTCGGAAAGCTATCTTGAACGTATGTGTGG
CTGTATCAATCTATTCGCGGCCGTCGTACAAACCGAAGACGTGTACACGG
CACAGAGAGCTTCCGGAGTTCGAAATCCATTCCCGCTTTCATGGGTGTGG
TGCATTTTGGCGCGGCTGTGCAACAAAGAGCAGAGGAGCATCACGCCCTC
AATCGTTTATGCTTTTCTAGAAATCGCTGGTTTCCGCCTTTCGCAGGAGT
ATGGTTCACAGTTTAAGAAGCTAATGTACAGCATCAGCGAGGCGGTCGTC
AAAAGAGCGATAAAGTCTGCGCCACGAGGACCGACCACAAGGCTTGAGAT
TTTCGTGGAAGACTTCCAGCGGGGTGGATTCGTTGTTCGCACACCGCCTG
AAGGCCGGAGGCTGCCTAGATCAGATGCTGAAAACACCGTCTGA

Coding sequence (CDS) from alignment at tig00004437_pilon:452311..453954-

>Gchil1231.t1 ID=Gchil1231.t1|Name=Gchil1231.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00004437_pilon:452311..453954- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGCTAGTGTCTACTCCCCTTTGAAGCCATCCGTGTTATCATC
AAAGACAAACAAATCTCTATTGAAACCAAACTCTAGACAGGAAGCCCTGC
AACTATGGGTGCGTCATGGGCTCGAAGTGTCAAGTCGGTCCGCGACGTTG
ATGTCTAAATGGAATTCGTATCACACCGCGGCAAAACACGATCACCAACG
GCTGATTGCCTCCTACGATGTTGCCCTACCATCATACACCCGAACAACGC
CTGCAAGGACTTTGCGTGTCTCTTGTTTGAGTATTAAGCGTGATGAAGGC
AAGCGAACCTCACTGCGAGTTCTGAGAAGATCGAAAATAGATATAATAGC
CCAACGAGAAGAAGCAGAACGGCTGAAACGAGAAAGGGAAATGAGGCTTC
AGAGAGAAAGCGAGATTGCTCTTCAGCGCGCTCAAGCAGAGTTAAGGGCT
GCAGCTGCAGAAAGCGCAGCATCAATTGCAGAAGAAAAGGACAGGGCAAA
ATCACGTACAGAACACGTTGGACGGAAAAGTGAAGGGGAACCCAGTGTAT
TCCCGGAAGCCCAATCAGCGTTGGAAAGGGCTGGAACACATGATGAGGAA
GCAGATCATTCGGAAGAGGTACTGGAAAAAAGGCCAAGCGCTATGCAGTA
CTCACCCGCGATCGAAGGTGAGAGGAAACAAACCGCAAAATCGCAGAAGC
TAAACCCTGAAAGTACAGATCAGGACGCTCTTCTAAAACAGGCTGAAGAT
GGGCTTCGTATTTGGGGAGAGGTATCCGCAGAGGCGGAGCAGTTTAAAAA
CAATCCATCCTTGAAAAGAACACGGCTCACTTTTAAGAAGCAAGTCAACC
TTGCCGTCAATCAGATCGCTGCCAGTATAAAACAAGTTTGGCGGAAAGTG
GTAGATCTATCTAAGATCGTCGCTGAACTGAAAGCCAACTATAGTACTGT
GGGCGAGTCATTTGCCATGAAAATGATCGCTGAGCGCTTAATTAGTGAGT
CTGACGGGAGTGCCGCTCTCAGCAAAACAACTGCGTTTGCGGTTGCCTCC
GCGATAGTTGGACTGACAGCCAGCGTCGAAAATGTGAGTAAGTTCAGATA
CATATTTTTGGGGGCTTTCCACGACCACTGTATATATACGATTCCGAGGT
ACGAAAAGAGGAGACAAGGAGAATCGATTGACCATTACAAATCCCGTATT
GGTTACAAAGAAGACGAGGATTCGGAAAGCTATCTTGAACGTATGTGTGG
CTGTATCAATCTATTCGCGGCCGTCGTACAAACCGAAGACGTGTACACGG
CACAGAGAGCTTCCGGAGTTCGAAATCCATTCCCGCTTTCATGGGTGTGG
TGCATTTTGGCGCGGCTGTGCAACAAAGAGCAGAGGAGCATCACGCCCTC
AATCGTTTATGCTTTTCTAGAAATCGCTGGTTTCCGCCTTTCGCAGGAGT
ATGGTTCACAGTTTAAGAAGCTAATGTACAGCATCAGCGAGGCGGTCGTC
AAAAGAGCGATAAAGTCTGCGCCACGAGGACCGACCACAAGGCTTGAGAT
TTTCGTGGAAGACTTCCAGCGGGGTGGATTCGTTGTTCGCACACCGCCTG
AAGGCCGGAGGCTGCCTAGATCAGATGCTGAAAACACCGTCTGA