Gchil1230.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1230.t1
Unique NameGchil1230.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:435236..436030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005651803.1
PFAMsNAD_binding_10
Max annot lvl3041|Chlorophyta
Evalue2.17e-32
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota,37U2N@33090|Viridiplantae,34HMP@3041|Chlorophyta
DescriptionNAD(P)H-binding
COG categoryG
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1230Gchil1230Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 435236..436030 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1230.t1.stop1Gchil1230.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 435236..435238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1230.t1.CDS1Gchil1230.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 435236..436030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1230.t1.exon1Gchil1230.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 435236..436030 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1230.t1.start1Gchil1230.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 436028..436030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1230.t1Gchil1230.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 435236..436030 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1230.t1 ID=Gchil1230.t1|Name=Gchil1230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MNSTTFISSAVLQRCISPPRSSRAQVCAKVSSPPADILVVAANRGLGAHL
STALQGTENLHTTHRPCSAASSEQEQVSTTHALDALDGPTAEALFSNLKP
RTVVSCIGGKAGTPELPDFEGNRNLIDAARRANVRRFVLISALGAGNSED
SVPSQVMDTLRPLLLEKSRAEVYLKQIHDIEWTIIRPAPIVEGKRGAPVA
TEDVSCYGTITRPDLADVVKKILFSEKAKGKTLHVVDRTGLLIVSPYVRP
LEFWEPLPFTEFNI*
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spliced messenger RNA

>Gchil1230.t1 ID=Gchil1230.t1|Name=Gchil1230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004437_pilon:435236..436030- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTACAACCTTCATCTCTTCGGCTGTACTGCAGAGATGTATTTC
CCCTCCTCGCTCTTCTCGTGCTCAAGTATGTGCCAAAGTCTCGTCACCAC
CTGCTGACATACTGGTGGTAGCTGCAAATCGGGGATTGGGGGCGCACTTA
TCTACTGCGTTACAGGGCACAGAAAATCTGCACACAACCCATCGACCATG
CAGTGCAGCTTCTTCTGAACAAGAGCAGGTGTCTACCACGCACGCGCTCG
ACGCTCTAGATGGCCCGACTGCAGAAGCTTTGTTCAGTAATTTAAAACCA
CGTACCGTCGTATCTTGCATAGGTGGAAAAGCTGGGACACCAGAACTACC
CGACTTTGAAGGAAACAGGAATCTCATCGATGCAGCAAGACGTGCAAACG
TTCGGCGATTCGTGCTTATATCTGCATTGGGGGCCGGTAATAGTGAGGAT
AGCGTTCCGTCCCAAGTAATGGACACATTACGTCCTTTGCTCCTTGAAAA
AAGTCGTGCGGAAGTATATTTAAAACAGATCCACGACATCGAATGGACTA
TAATCAGACCTGCACCGATTGTGGAAGGCAAAAGGGGAGCACCTGTTGCA
ACGGAAGATGTAAGTTGTTATGGGACGATCACGAGACCGGATTTAGCTGA
TGTGGTAAAAAAGATTCTCTTCAGTGAGAAGGCGAAAGGAAAGACCTTGC
ATGTGGTTGATAGGACTGGCTTGCTTATAGTGTCACCGTACGTGCGTCCT
CTAGAATTCTGGGAGCCGTTGCCATTCACTGAGTTCAATATATAG
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protein sequence of Gchil1230.t1

>Gchil1230.t1 ID=Gchil1230.t1|Name=Gchil1230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MNSTTFISSAVLQRCISPPRSSRAQVCAKVSSPPADILVVAANRGLGAHL
STALQGTENLHTTHRPCSAASSEQEQVSTTHALDALDGPTAEALFSNLKP
RTVVSCIGGKAGTPELPDFEGNRNLIDAARRANVRRFVLISALGAGNSED
SVPSQVMDTLRPLLLEKSRAEVYLKQIHDIEWTIIRPAPIVEGKRGAPVA
TEDVSCYGTITRPDLADVVKKILFSEKAKGKTLHVVDRTGLLIVSPYVRP
LEFWEPLPFTEFNI*
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mRNA from alignment at tig00004437_pilon:435236..436030-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1230.t1 ID=Gchil1230.t1|Name=Gchil1230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004437_pilon:435236..436030- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTACAACCTTCATCTCTTCGGCTGTACTGCAGAGATGTATTTC
CCCTCCTCGCTCTTCTCGTGCTCAAGTATGTGCCAAAGTCTCGTCACCAC
CTGCTGACATACTGGTGGTAGCTGCAAATCGGGGATTGGGGGCGCACTTA
TCTACTGCGTTACAGGGCACAGAAAATCTGCACACAACCCATCGACCATG
CAGTGCAGCTTCTTCTGAACAAGAGCAGGTGTCTACCACGCACGCGCTCG
ACGCTCTAGATGGCCCGACTGCAGAAGCTTTGTTCAGTAATTTAAAACCA
CGTACCGTCGTATCTTGCATAGGTGGAAAAGCTGGGACACCAGAACTACC
CGACTTTGAAGGAAACAGGAATCTCATCGATGCAGCAAGACGTGCAAACG
TTCGGCGATTCGTGCTTATATCTGCATTGGGGGCCGGTAATAGTGAGGAT
AGCGTTCCGTCCCAAGTAATGGACACATTACGTCCTTTGCTCCTTGAAAA
AAGTCGTGCGGAAGTATATTTAAAACAGATCCACGACATCGAATGGACTA
TAATCAGACCTGCACCGATTGTGGAAGGCAAAAGGGGAGCACCTGTTGCA
ACGGAAGATGTAAGTTGTTATGGGACGATCACGAGACCGGATTTAGCTGA
TGTGGTAAAAAAGATTCTCTTCAGTGAGAAGGCGAAAGGAAAGACCTTGC
ATGTGGTTGATAGGACTGGCTTGCTTATAGTGTCACCGTACGTGCGTCCT
CTAGAATTCTGGGAGCCGTTGCCATTCACTGAGTTCAATATATAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:435236..436030-

>Gchil1230.t1 ID=Gchil1230.t1|Name=Gchil1230.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00004437_pilon:435236..436030- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCTACAACCTTCATCTCTTCGGCTGTACTGCAGAGATGTATTTC
CCCTCCTCGCTCTTCTCGTGCTCAAGTATGTGCCAAAGTCTCGTCACCAC
CTGCTGACATACTGGTGGTAGCTGCAAATCGGGGATTGGGGGCGCACTTA
TCTACTGCGTTACAGGGCACAGAAAATCTGCACACAACCCATCGACCATG
CAGTGCAGCTTCTTCTGAACAAGAGCAGGTGTCTACCACGCACGCGCTCG
ACGCTCTAGATGGCCCGACTGCAGAAGCTTTGTTCAGTAATTTAAAACCA
CGTACCGTCGTATCTTGCATAGGTGGAAAAGCTGGGACACCAGAACTACC
CGACTTTGAAGGAAACAGGAATCTCATCGATGCAGCAAGACGTGCAAACG
TTCGGCGATTCGTGCTTATATCTGCATTGGGGGCCGGTAATAGTGAGGAT
AGCGTTCCGTCCCAAGTAATGGACACATTACGTCCTTTGCTCCTTGAAAA
AAGTCGTGCGGAAGTATATTTAAAACAGATCCACGACATCGAATGGACTA
TAATCAGACCTGCACCGATTGTGGAAGGCAAAAGGGGAGCACCTGTTGCA
ACGGAAGATGTAAGTTGTTATGGGACGATCACGAGACCGGATTTAGCTGA
TGTGGTAAAAAAGATTCTCTTCAGTGAGAAGGCGAAAGGAAAGACCTTGC
ATGTGGTTGATAGGACTGGCTTGCTTATAGTGTCACCGTACGTGCGTCCT
CTAGAATTCTGGGAGCCGTTGCCATTCACTGAGTTCAATATATAG
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