Gchil1229.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1229.t1
Unique NameGchil1229.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:432619..434197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FIC1
Max annot lvl2759|Eukaryota
Evalue3.17e-11
EggNOG OGsCOG1916@1|root,2SW75@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1229Gchil1229Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 432619..434197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1Gchil1229.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 432619..434197 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1.stop1Gchil1229.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 432619..432621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1.CDS1Gchil1229.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 432619..432716 -
Gchil1229.t1.CDS2Gchil1229.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 432821..432887 -
Gchil1229.t1.CDS3Gchil1229.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 432992..433726 -
Gchil1229.t1.CDS4Gchil1229.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 433796..433839 -
Gchil1229.t1.CDS5Gchil1229.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 433915..434197 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1.exon1Gchil1229.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 432619..432716 -
Gchil1229.t1.exon2Gchil1229.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 432821..432887 -
Gchil1229.t1.exon3Gchil1229.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 432992..433726 -
Gchil1229.t1.exon4Gchil1229.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 433796..433839 -
Gchil1229.t1.exon5Gchil1229.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 433915..434197 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1.intron1Gchil1229.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 432717..432820 -
Gchil1229.t1.intron2Gchil1229.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 432888..432991 -
Gchil1229.t1.intron3Gchil1229.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 433727..433795 -
Gchil1229.t1.intron4Gchil1229.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 433840..433914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1229.t1.start1Gchil1229.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 434195..434197 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1229.t1 ID=Gchil1229.t1|Name=Gchil1229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp
MAEAFVSSFPYSLRGASLRILTESSKRYEIDRCIGASRRLAVNVGPSIES
RRAFLYPICSRESWLPPSVASLSENLNGSKIYIVGCVHGSIVSANDVREV
LDKTDPDAIVLELCEPRLKALQKTITQKDGAEYAANIKAKTKKTFAQLTE
SFGGRGPAFVAIILEKVYEFQTLVGVDPGIEFVEPIVRFPRNRVICGDVL
ATDTVNALFKVFSDPFRSLNDCFSTIVDILNRLIFPPVGGVRFFSVFLRS
PARLLELVRLVLPASLVAIFIGLASNAGALAFDMTPMAASISHPMLTSSL
PWLSSLIDALLLAYVNISLLRFIKVLIADRDKVLSQNILDTLSKFREGQE
TPVTSGFIDDVYAEYITQWVPKTYSREDTMCGTSLPPHSTPYNLLVFEPA
TKKPGEVL*
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spliced messenger RNA

>Gchil1229.t1 ID=Gchil1229.t1|Name=Gchil1229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00004437_pilon:432619..434197- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGCTTTTGTATCATCTTTCCCGTATTCTCTTCGTGGAGCAAG
TTTAAGGATATTGACTGAATCTTCAAAACGGTACGAAATTGATCGTTGCA
TTGGCGCGTCACGTCGATTAGCGGTTAATGTAGGGCCATCCATTGAAAGT
CGTCGAGCGTTTTTATATCCAATATGTTCTCGAGAGTCATGGCTCCCACC
AAGCGTTGCATCATTGTCCGAAAATTTGAATGGTTCAAAGATATACATTG
TCGGCTGCGTCCATGGCTCCATTGTTAGTGCCAATGACGTACGCGAAGTC
TTGGATAAAACGGACCCCGATGCTATCGTTTTGGAACTCTGTGAGCCGCG
TTTAAAAGCACTTCAGAAGACAATTACGCAAAAAGATGGTGCAGAATATG
CAGCAAACATAAAAGCTAAAACGAAAAAAACCTTTGCTCAGCTAACGGAA
TCATTTGGAGGTCGTGGACCAGCTTTTGTTGCAATTATTCTCGAAAAAGT
ATATGAGTTTCAAACGTTGGTCGGTGTCGATCCAGGAATTGAATTTGTCG
AACCCATTGTAAGATTTCCTCGGAATCGCGTGATATGCGGAGACGTATTG
GCAACAGATACAGTTAATGCACTGTTCAAGGTTTTTTCAGATCCGTTTCG
ATCACTTAATGATTGCTTTTCAACGATTGTTGACATTCTCAACAGATTGA
TATTTCCACCGGTTGGGGGTGTTCGATTCTTTTCCGTTTTCCTCCGAAGT
CCGGCTCGTCTTCTCGAACTTGTTAGACTGGTGCTACCGGCTTCATTGGT
AGCCATTTTCATTGGATTGGCTAGTAACGCTGGCGCCTTAGCCTTCGATA
TGACTCCCATGGCTGCTTCTATCTCACATCCGATGCTTACATCGTCTCTG
CCATGGCTTTCATCACTCATAGATGCACTATTACTTGCTTATGTTAATAT
ATCTTTACTGCGTTTCATCAAAGTCTTGATCGCCGATCGGGACAAAGTTC
TCTCTCAGAACATACTTGACACGCTTTCCAAGTTTCGAGAAGGCCAGGAA
ACTCCAGTGACGTCCGGATTCATTGATGATGTTTACGCAGAGTATATTAC
ACAGTGGGTGCCGAAAACTTACTCCCGAGAAGATACAATGTGTGGAACAT
CCCTGCCGCCACACTCAACGCCCTATAACCTCTTGGTATTTGAACCCGCG
ACAAAGAAACCCGGTGAGGTCTTATGA
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protein sequence of Gchil1229.t1

>Gchil1229.t1 ID=Gchil1229.t1|Name=Gchil1229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MAEAFVSSFPYSLRGASLRILTESSKRYEIDRCIGASRRLAVNVGPSIES
RRAFLYPICSRESWLPPSVASLSENLNGSKIYIVGCVHGSIVSANDVREV
LDKTDPDAIVLELCEPRLKALQKTITQKDGAEYAANIKAKTKKTFAQLTE
SFGGRGPAFVAIILEKVYEFQTLVGVDPGIEFVEPIVRFPRNRVICGDVL
ATDTVNALFKVFSDPFRSLNDCFSTIVDILNRLIFPPVGGVRFFSVFLRS
PARLLELVRLVLPASLVAIFIGLASNAGALAFDMTPMAASISHPMLTSSL
PWLSSLIDALLLAYVNISLLRFIKVLIADRDKVLSQNILDTLSKFREGQE
TPVTSGFIDDVYAEYITQWVPKTYSREDTMCGTSLPPHSTPYNLLVFEPA
TKKPGEVL*
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mRNA from alignment at tig00004437_pilon:432619..434197-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1229.t1 ID=Gchil1229.t1|Name=Gchil1229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1579bp|location=Sequence derived from alignment at tig00004437_pilon:432619..434197- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCTTTTGTATCATCTTTCCCGTATTCTCTTCGTGGAGCAAG
TTTAAGGATATTGACTGAATCTTCAAAACGGTACGAAATTGATCGTTGCA
TTGGCGCGTCACGTCGATTAGCGGTTAATGTAGGGCCATCCATTGAAAGT
CGTCGAGCGTTTTTATATCCAATATGTTCTCGAGAGTCATGGCTCCCACC
AAGCGTTGCATCATTGTCCGAAAATTTGAATGGTTCAAAGATATACATTG
TCGGCTGCGTCCATGGCTCCATTGTTAGTGCCAGTGCGTTGAAAGTCTTC
ACTTCCTCCCATTATTATCGTTCATTAAACATCTACTGACAGTTCTTGCT
TGATGTAGATGACGTACGCGAAGTCTTGGATAAAACGGACCCCGATGCTA
TCGTACGTACATGGCCCACCCTGCCAGTACAGTTTCGACACAAAGATTTC
TAACCTAAAACTTCTATATAGGTTTTGGAACTCTGTGAGCCGCGTTTAAA
AGCACTTCAGAAGACAATTACGCAAAAAGATGGTGCAGAATATGCAGCAA
ACATAAAAGCTAAAACGAAAAAAACCTTTGCTCAGCTAACGGAATCATTT
GGAGGTCGTGGACCAGCTTTTGTTGCAATTATTCTCGAAAAAGTATATGA
GTTTCAAACGTTGGTCGGTGTCGATCCAGGAATTGAATTTGTCGAACCCA
TTGTAAGATTTCCTCGGAATCGCGTGATATGCGGAGACGTATTGGCAACA
GATACAGTTAATGCACTGTTCAAGGTTTTTTCAGATCCGTTTCGATCACT
TAATGATTGCTTTTCAACGATTGTTGACATTCTCAACAGATTGATATTTC
CACCGGTTGGGGGTGTTCGATTCTTTTCCGTTTTCCTCCGAAGTCCGGCT
CGTCTTCTCGAACTTGTTAGACTGGTGCTACCGGCTTCATTGGTAGCCAT
TTTCATTGGATTGGCTAGTAACGCTGGCGCCTTAGCCTTCGATATGACTC
CCATGGCTGCTTCTATCTCACATCCGATGCTTACATCGTCTCTGCCATGG
CTTTCATCACTCATAGATGCACTATTACTTGCTTATGTTAATATATCTTT
ACTGCGTTTCATCAAAGTCTTGATCGCCGATCGGGACAAAGTTCTCTCTC
AGAACATACTTGACACGCTTTCCAAGTTTCGAGAAGGCCAGGAAACTCCA
GTGACGGTTTGTGTTGTTGTCGGTCTTCTGCATGTCAACGGCATATTGAG
GATTTTACAAGAAAGACTAAAAAACGCATAGACATCAACGCTTGTCGTGT
GACTTCCCAGTCCGGATTCATTGATGATGTTTACGCAGAGTATATTACAC
AGTGGGTGCCGAAAACTTACTCCCGAGGTAAGCAAACTTCAGTTACAATG
CTGATCATGTAGTTACAAGTTTTTTTTCAAATGCTTACATGTACAGTTTG
TCTCTTATGTATGAGGTGCTTCTTTTTCCAGAAGATACAATGTGTGGAAC
ATCCCTGCCGCCACACTCAACGCCCTATAACCTCTTGGTATTTGAACCCG
CGACAAAGAAACCCGGTGAGGTCTTATGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:432619..434197-

>Gchil1229.t1 ID=Gchil1229.t1|Name=Gchil1229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00004437_pilon:432619..434197- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCTTTTGTATCATCTTTCCCGTATTCTCTTCGTGGAGCAAG
TTTAAGGATATTGACTGAATCTTCAAAACGGTACGAAATTGATCGTTGCA
TTGGCGCGTCACGTCGATTAGCGGTTAATGTAGGGCCATCCATTGAAAGT
CGTCGAGCGTTTTTATATCCAATATGTTCTCGAGAGTCATGGCTCCCACC
AAGCGTTGCATCATTGTCCGAAAATTTGAATGGTTCAAAGATATACATTG
TCGGCTGCGTCCATGGCTCCATTGTTAGTGCCAATGACGTACGCGAAGTC
TTGGATAAAACGGACCCCGATGCTATCGTTTTGGAACTCTGTGAGCCGCG
TTTAAAAGCACTTCAGAAGACAATTACGCAAAAAGATGGTGCAGAATATG
CAGCAAACATAAAAGCTAAAACGAAAAAAACCTTTGCTCAGCTAACGGAA
TCATTTGGAGGTCGTGGACCAGCTTTTGTTGCAATTATTCTCGAAAAAGT
ATATGAGTTTCAAACGTTGGTCGGTGTCGATCCAGGAATTGAATTTGTCG
AACCCATTGTAAGATTTCCTCGGAATCGCGTGATATGCGGAGACGTATTG
GCAACAGATACAGTTAATGCACTGTTCAAGGTTTTTTCAGATCCGTTTCG
ATCACTTAATGATTGCTTTTCAACGATTGTTGACATTCTCAACAGATTGA
TATTTCCACCGGTTGGGGGTGTTCGATTCTTTTCCGTTTTCCTCCGAAGT
CCGGCTCGTCTTCTCGAACTTGTTAGACTGGTGCTACCGGCTTCATTGGT
AGCCATTTTCATTGGATTGGCTAGTAACGCTGGCGCCTTAGCCTTCGATA
TGACTCCCATGGCTGCTTCTATCTCACATCCGATGCTTACATCGTCTCTG
CCATGGCTTTCATCACTCATAGATGCACTATTACTTGCTTATGTTAATAT
ATCTTTACTGCGTTTCATCAAAGTCTTGATCGCCGATCGGGACAAAGTTC
TCTCTCAGAACATACTTGACACGCTTTCCAAGTTTCGAGAAGGCCAGGAA
ACTCCAGTGACGTCCGGATTCATTGATGATGTTTACGCAGAGTATATTAC
ACAGTGGGTGCCGAAAACTTACTCCCGAGAAGATACAATGTGTGGAACAT
CCCTGCCGCCACACTCAACGCCCTATAACCTCTTGGTATTTGAACCCGCG
ACAAAGAAACCCGGTGAGGTCTTATGA
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