Gchil1225.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1225.t1
Unique Name	Gchil1225.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	190

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:309477..310046 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G8J5
Preferred name	ZNHIT1
PFAMs	zf-HIT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11663,ko:K12846
KEGG Pathway	ko03040,map03040
KEGG Module	M00354
GOs	GO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
Evalue	2.59e-17
EggNOG OGs	KOG3362@1\|root,KOG3362@2759\|Eukaryota
Description	regulation of histone deacetylation
COG category	U
BRITE	ko00000,ko00001,ko00002,ko03036,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1225	Gchil1225	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 309477..310046 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1225.t1.start1	Gchil1225.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 309477..309479 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1225.t1.CDS1	Gchil1225.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 309477..310046 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1225.t1.exon1	Gchil1225.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 309477..310046 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1225.t1.stop1	Gchil1225.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 310044..310046 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1225.t1	Gchil1225.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 309477..310046 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:309477..310046+
coding sequence from alignment at tig00004437_pilon:309477..310046+

mRNA sequence

>Gchil1225.t1 ID=Gchil1225.t1|Name=Gchil1225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MASLKSRSSNPEEGTTRGKRKREVANRVKHVDFSVIQEVRNRRLEALEND
NYAAEQEAFLLDGEDEYEPGMESEEEMAGRKRPSRGRKRKQRRRKRGLKD
NRTEAKGAGVERWNKPTHVAIKEEDLSARPKKMVPWAQMIVSSSSRPPRH
FCSTCGYSAPYTCTRCFTRFCSVRCNEVHQETRCLKFTV*

spliced messenger RNA

>Gchil1225.t1 ID=Gchil1225.t1|Name=Gchil1225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004437_pilon:309477..310046+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCTCAAGAGCCGCAGTTCAAATCCCGAGGAGGGTACCACGCG
TGGTAAACGAAAGCGAGAAGTCGCAAATCGTGTGAAACATGTAGACTTTT
CTGTCATTCAAGAGGTTCGAAATCGACGGCTGGAAGCGCTTGAAAACGAC
AACTACGCCGCAGAACAGGAAGCATTTCTATTAGACGGCGAAGATGAGTA
TGAGCCAGGCATGGAGTCTGAGGAGGAGATGGCAGGAAGAAAGCGGCCTT
CTCGAGGACGGAAACGAAAGCAGCGAAGACGGAAACGTGGACTAAAAGAT
AATCGAACGGAGGCCAAAGGGGCTGGGGTAGAGCGTTGGAACAAACCTAC
TCACGTGGCTATCAAAGAAGAGGACCTATCTGCACGACCAAAGAAGATGG
TACCATGGGCGCAAATGATTGTATCCTCAAGCTCCCGCCCTCCTCGTCAC
TTTTGCTCAACATGCGGCTACTCTGCACCTTATACTTGCACAAGATGCTT
CACACGATTCTGTTCTGTGAGATGTAATGAAGTACACCAAGAGACGAGAT
GCCTGAAGTTCACTGTTTAG

protein sequence of Gchil1225.t1

>Gchil1225.t1 ID=Gchil1225.t1|Name=Gchil1225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MASLKSRSSNPEEGTTRGKRKREVANRVKHVDFSVIQEVRNRRLEALEND
NYAAEQEAFLLDGEDEYEPGMESEEEMAGRKRPSRGRKRKQRRRKRGLKD
NRTEAKGAGVERWNKPTHVAIKEEDLSARPKKMVPWAQMIVSSSSRPPRH
FCSTCGYSAPYTCTRCFTRFCSVRCNEVHQETRCLKFTV*

mRNA from alignment at tig00004437_pilon:309477..310046+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1225.t1 ID=Gchil1225.t1|Name=Gchil1225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004437_pilon:309477..310046+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCGCTCAAGAGCCGCAGTTCAAATCCCGAGGAGGGTACCACGCG
TGGTAAACGAAAGCGAGAAGTCGCAAATCGTGTGAAACATGTAGACTTTT
CTGTCATTCAAGAGGTTCGAAATCGACGGCTGGAAGCGCTTGAAAACGAC
AACTACGCCGCAGAACAGGAAGCATTTCTATTAGACGGCGAAGATGAGTA
TGAGCCAGGCATGGAGTCTGAGGAGGAGATGGCAGGAAGAAAGCGGCCTT
CTCGAGGACGGAAACGAAAGCAGCGAAGACGGAAACGTGGACTAAAAGAT
AATCGAACGGAGGCCAAAGGGGCTGGGGTAGAGCGTTGGAACAAACCTAC
TCACGTGGCTATCAAAGAAGAGGACCTATCTGCACGACCAAAGAAGATGG
TACCATGGGCGCAAATGATTGTATCCTCAAGCTCCCGCCCTCCTCGTCAC
TTTTGCTCAACATGCGGCTACTCTGCACCTTATACTTGCACAAGATGCTT
CACACGATTCTGTTCTGTGAGATGTAATGAAGTACACCAAGAGACGAGAT
GCCTGAAGTTCACTGTTTAG

Coding sequence (CDS) from alignment at tig00004437_pilon:309477..310046+

>Gchil1225.t1 ID=Gchil1225.t1|Name=Gchil1225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00004437_pilon:309477..310046+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCGCTCAAGAGCCGCAGTTCAAATCCCGAGGAGGGTACCACGCG
TGGTAAACGAAAGCGAGAAGTCGCAAATCGTGTGAAACATGTAGACTTTT
CTGTCATTCAAGAGGTTCGAAATCGACGGCTGGAAGCGCTTGAAAACGAC
AACTACGCCGCAGAACAGGAAGCATTTCTATTAGACGGCGAAGATGAGTA
TGAGCCAGGCATGGAGTCTGAGGAGGAGATGGCAGGAAGAAAGCGGCCTT
CTCGAGGACGGAAACGAAAGCAGCGAAGACGGAAACGTGGACTAAAAGAT
AATCGAACGGAGGCCAAAGGGGCTGGGGTAGAGCGTTGGAACAAACCTAC
TCACGTGGCTATCAAAGAAGAGGACCTATCTGCACGACCAAAGAAGATGG
TACCATGGGCGCAAATGATTGTATCCTCAAGCTCCCGCCCTCCTCGTCAC
TTTTGCTCAACATGCGGCTACTCTGCACCTTATACTTGCACAAGATGCTT
CACACGATTCTGTTCTGTGAGATGTAATGAAGTACACCAAGAGACGAGAT
GCCTGAAGTTCACTGTTTAG