Gchil1220.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1220.t1
Unique Name	Gchil1220.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	205

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:188343..188957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMC172CT
Preferred name	GGACT
PFAMs	GGACT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19761
GOs	GO:0003674,GO:0003824,GO:0005198,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0008307,GO:0009056,GO:0009628,GO:0016829,GO:0016840,GO:0016842,GO:0032501,GO:0032502,GO:0042219,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0061929,GO:0071704,GO:0072359,GO:0080167,GO:1901564,GO:1901565,GO:1901575
Evalue	3.11e-32
EggNOG OGs	COG2105@1\|root,KOG4450@2759\|Eukaryota
Description	gamma-glutamylaminecyclotransferase activity
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1220	Gchil1220	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 188343..188957 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1220.t1.start1	Gchil1220.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 188343..188345 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1220.t1.CDS1	Gchil1220.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 188343..188957 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1220.t1.exon1	Gchil1220.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 188343..188957 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1220.t1.stop1	Gchil1220.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 188955..188957 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1220.t1	Gchil1220.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 188343..188957 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:188343..188957+
coding sequence from alignment at tig00004437_pilon:188343..188957+

mRNA sequence

>Gchil1220.t1 ID=Gchil1220.t1|Name=Gchil1220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=205bp
MLRCYAAQPPRPQSPSPSSPSSSPSPSRAPGAAFATARPLGLAAAAAKPV
SNALLPRASNSVCVEAPHLVFVYGTLKRGFANSSKLRDATYVGEYRTQTR
YPLVVGGPHHSPYLLDLPTRGARVKGELYAVDDAVLAELDRLERVGVNYA
RARTVVRCCARGACVDAFVYLKRNDLARLARLRFLDDYQCRRYVPRHLRA
AATP*

spliced messenger RNA

>Gchil1220.t1 ID=Gchil1220.t1|Name=Gchil1220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00004437_pilon:188343..188957+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGTTGCTACGCTGCACAACCGCCCCGCCCGCAgtcgccgtcgcc
gtcatcgccgtcgtcgtcgccgtcgccgtcgcGCGCGCCCGGCGCGGCGT
TCGCCACGGCGCGTCCGCTCGGTCTGGCCGCCGCCGCCGCCAAGCCGGTA
TCCAACGCGCTGCTGCCGCGCGCATCAAACAGTGTGTGCGTCGAAGCGCC
GCACCTGGTATTCGTGTACGGGACGCTGAAGCGAGGGTTTGCAAACAGCT
CCAAACTACGCGACGCCACGTACGTGGGTGAGTATCGCACGCAGACGCGC
TATCCTTTAGTGGTAGGCGGACCTCATCATTCGCCCTATCTGCTGGACCT
TCCCACGCGCGGCGCGCGCGTCAAGGGTGAACTTTACGCCGTGGATGACG
CCGTGCTGGCCGAATTGGACCGTCTCGAACGCGTGGGTGTCAACTATgcg
cgcgcgcgcaccgtggtgcgctgttgcgcgcgcggcgcCTGTGTTGATGC
TTTTGTGTATCTCAAGCGTAACGACCTTGCGCGCTTGGCGCGCCTGCGCT
TTCTCGATGACTACCAGTGTCGTCGTTATGTGCCGCGGCACCTGCGTGCC
GCCGCCACGCCGTGA

protein sequence of Gchil1220.t1

>Gchil1220.t1 ID=Gchil1220.t1|Name=Gchil1220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MLRCYAAQPPRPQSPSPSSPSSSPSPSRAPGAAFATARPLGLAAAAAKPV
SNALLPRASNSVCVEAPHLVFVYGTLKRGFANSSKLRDATYVGEYRTQTR
YPLVVGGPHHSPYLLDLPTRGARVKGELYAVDDAVLAELDRLERVGVNYA
RARTVVRCCARGACVDAFVYLKRNDLARLARLRFLDDYQCRRYVPRHLRA
AATP*

mRNA from alignment at tig00004437_pilon:188343..188957+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1220.t1 ID=Gchil1220.t1|Name=Gchil1220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00004437_pilon:188343..188957+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGTTGCTACGCTGCACAACCGCCCCGCCCGCAgtcgccgtcgcc
gtcatcgccgtcgtcgtcgccgtcgccgtcgcGCGCGCCCGGCGCGGCGT
TCGCCACGGCGCGTCCGCTCGGTCTGGCCGCCGCCGCCGCCAAGCCGGTA
TCCAACGCGCTGCTGCCGCGCGCATCAAACAGTGTGTGCGTCGAAGCGCC
GCACCTGGTATTCGTGTACGGGACGCTGAAGCGAGGGTTTGCAAACAGCT
CCAAACTACGCGACGCCACGTACGTGGGTGAGTATCGCACGCAGACGCGC
TATCCTTTAGTGGTAGGCGGACCTCATCATTCGCCCTATCTGCTGGACCT
TCCCACGCGCGGCGCGCGCGTCAAGGGTGAACTTTACGCCGTGGATGACG
CCGTGCTGGCCGAATTGGACCGTCTCGAACGCGTGGGTGTCAACTATgcg
cgcgcgcgcaccgtggtgcgctgttgcgcgcgcggcgcCTGTGTTGATGC
TTTTGTGTATCTCAAGCGTAACGACCTTGCGCGCTTGGCGCGCCTGCGCT
TTCTCGATGACTACCAGTGTCGTCGTTATGTGCCGCGGCACCTGCGTGCC
GCCGCCACGCCGTGA

Coding sequence (CDS) from alignment at tig00004437_pilon:188343..188957+

>Gchil1220.t1 ID=Gchil1220.t1|Name=Gchil1220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00004437_pilon:188343..188957+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGTTGCTACGCTGCACAACCGCCCCGCCCGCAgtcgccgtcgcc
gtcatcgccgtcgtcgtcgccgtcgccgtcgcGCGCGCCCGGCGCGGCGT
TCGCCACGGCGCGTCCGCTCGGTCTGGCCGCCGCCGCCGCCAAGCCGGTA
TCCAACGCGCTGCTGCCGCGCGCATCAAACAGTGTGTGCGTCGAAGCGCC
GCACCTGGTATTCGTGTACGGGACGCTGAAGCGAGGGTTTGCAAACAGCT
CCAAACTACGCGACGCCACGTACGTGGGTGAGTATCGCACGCAGACGCGC
TATCCTTTAGTGGTAGGCGGACCTCATCATTCGCCCTATCTGCTGGACCT
TCCCACGCGCGGCGCGCGCGTCAAGGGTGAACTTTACGCCGTGGATGACG
CCGTGCTGGCCGAATTGGACCGTCTCGAACGCGTGGGTGTCAACTATgcg
cgcgcgcgcaccgtggtgcgctgttgcgcgcgcggcgcCTGTGTTGATGC
TTTTGTGTATCTCAAGCGTAACGACCTTGCGCGCTTGGCGCGCCTGCGCT
TTCTCGATGACTACCAGTGTCGTCGTTATGTGCCGCGGCACCTGCGTGCC
GCCGCCACGCCGTGA