Gchil1219.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1219.t1
Unique Name	Gchil1219.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:186392..187654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708105.1
PFAMs	SpoIIE
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17508
Evalue	1.93e-66
EggNOG OGs	COG0631@1\|root,KOG1379@2759\|Eukaryota
EC	3.1.3.16
Description	phosphoprotein phosphatase activity
COG category	T
BRITE	ko00000,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1219	Gchil1219	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 186392..187654 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1219.t1.start1	Gchil1219.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 186392..186394 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1219.t1.CDS1	Gchil1219.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 186392..187654 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1219.t1.exon1	Gchil1219.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 186392..187654 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1219.t1.stop1	Gchil1219.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 187652..187654 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1219.t1	Gchil1219.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 186392..187654 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:186392..187654+
coding sequence from alignment at tig00004437_pilon:186392..187654+

mRNA sequence

>Gchil1219.t1 ID=Gchil1219.t1|Name=Gchil1219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=421bp
MLCTATSSPSASSSSPVTPATPTVAAAAEPPRRQNRATLDKRALAAAALA
GGLATAGGVVGVSNSGDDNDEKENTNIQCSGDDGTALSSSTVTSDDSTQQ
HDGGCTSVTARARSLVFRSAVVSIPHPDKADKGGEDAFFVQCNALGVFDG
VGGWASIGVDAGLYSKQLAQLTGEHIYKQGACSVKEALKQAAACNEAIGS
STACVVGIDDGKLFGVNLGDSGLVVIRDGRIIYKTVEQQHYFNCPYQIGT
DSLDTVEVGNSIEVGLRHGDWVIMGTDGLWDNVFADKIVEVVAQHEHAVH
NTGAHEEDDAAHKSEEQQNDMRWEEASVVSDCGSNSDERCVARANDCSKR
AEIVAEKLGEVAVKVANNERSSSPFAVNARNAGHVFMGGKVDDITIISAL
VVDGARSDDLTRSDHHPPPP*

spliced messenger RNA

>Gchil1219.t1 ID=Gchil1219.t1|Name=Gchil1219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00004437_pilon:186392..187654+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGCACAGCAACTtcgtctccgtccgcgtcgtcgtcgtcgCCCGT
CACACCCGCGACGCCCACCGTAGCAGCCGCTGCAGAGCCGCCGCGGCGAC
AGAACCGCGCCACGCTGGACAAGCGTGCTCTGGCGGCGGCCGCACTCGCC
GGCGGGCTGGCCACGGCCGGTGGCGTGGTTGGTGTTAGTAATAGCGGCGA
TGATAACGATGAAAAGGAGAATACAAACATACAATGCTCTGGGGATGACG
GCACGGCGCTGTCTTCGTCCACGGTGACGAGCGACGACTCGACGCAACAG
CACGATGGAGGGTGCACATCTGTGACGGCGCGCGCACGGTCGTTGGTGTT
CCGGTCGGCAGTGGTGAGCATTCCGCACCCGGACAAGGCGGACAAGGGTG
GCGAGGACGCGTTCTTCGTGCAGTGCAACGCGCTGGGTGTGTTTGACGGA
GTGGGCGGATGGGCGAGCATCGGTGTGGACGCCGGGCTGTACTCAAAACA
ACTGGCGCAGCTGACTGGGGAGCACATTTATAAACAGGGCGCGTGCTCTG
TGAAGGAGGCGCTGAAACAGGCGGCGGCGTGCAATGAGGCAATTGGGTCG
AGCACAGCGTGCGTGGTGGGCATTGATGACGGCAAACTGTTTGGCGTAAA
CCTCGGCGACTCGGGACTGGTTGTGATTCGCGACGGACGCATCATCTACA
AAACGGTGGAGCAGCAGCACTACTTCAACTGCCCGTACCAGATTGGAACC
GACTCGCTGGACACGGTGGAGGTGGGCAACTCCATCGAGGTGGGGCTGCG
GCACGGCGACTGGGTGATCATGGGCACGGACGGACTATGGGACAACGTGT
TCGCCGACAAGATCGTGGAGGTGGTCGCACAACACGAACACGCAGTGCAC
AACACGGGCGCGCACGAAGAAGACGACGCGGCGCACAAGAGCGAGGAGCA
GCAGAACGACATGAGGTGGGAGGAGGCCAGTGTGGTGAGCGACTGCGGTA
GCAACAGCGACGAACGGTGTGTGGCACGAGCTAACGATTGTAGCAAACGG
GCGGAAATTGTGGCGGAAAAGCTGGGCGAGGTGGCCGTCAAGGTGGCTAA
CAACGAACGCTCTTCGTCGCCGTTTGCTGTTAATGCGCGCAACGCAGGGC
ACGTGTTTATGGGCGGCAAGGTGGACGATATCACCATCATCTCCGCGCTG
GTTGTGGACGGCGCGCGCAGCGACGACCTCACGCGTAGCGACCACCACCC
GCCGCCGCCGTGA

protein sequence of Gchil1219.t1

>Gchil1219.t1 ID=Gchil1219.t1|Name=Gchil1219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=421bp
MLCTATSSPSASSSSPVTPATPTVAAAAEPPRRQNRATLDKRALAAAALA
GGLATAGGVVGVSNSGDDNDEKENTNIQCSGDDGTALSSSTVTSDDSTQQ
HDGGCTSVTARARSLVFRSAVVSIPHPDKADKGGEDAFFVQCNALGVFDG
VGGWASIGVDAGLYSKQLAQLTGEHIYKQGACSVKEALKQAAACNEAIGS
STACVVGIDDGKLFGVNLGDSGLVVIRDGRIIYKTVEQQHYFNCPYQIGT
DSLDTVEVGNSIEVGLRHGDWVIMGTDGLWDNVFADKIVEVVAQHEHAVH
NTGAHEEDDAAHKSEEQQNDMRWEEASVVSDCGSNSDERCVARANDCSKR
AEIVAEKLGEVAVKVANNERSSSPFAVNARNAGHVFMGGKVDDITIISAL
VVDGARSDDLTRSDHHPPPP*

mRNA from alignment at tig00004437_pilon:186392..187654+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1219.t1 ID=Gchil1219.t1|Name=Gchil1219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00004437_pilon:186392..187654+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTGCACAGCAACTtcgtctccgtccgcgtcgtcgtcgtcgCCCGT
CACACCCGCGACGCCCACCGTAGCAGCCGCTGCAGAGCCGCCGCGGCGAC
AGAACCGCGCCACGCTGGACAAGCGTGCTCTGGCGGCGGCCGCACTCGCC
GGCGGGCTGGCCACGGCCGGTGGCGTGGTTGGTGTTAGTAATAGCGGCGA
TGATAACGATGAAAAGGAGAATACAAACATACAATGCTCTGGGGATGACG
GCACGGCGCTGTCTTCGTCCACGGTGACGAGCGACGACTCGACGCAACAG
CACGATGGAGGGTGCACATCTGTGACGGCGCGCGCACGGTCGTTGGTGTT
CCGGTCGGCAGTGGTGAGCATTCCGCACCCGGACAAGGCGGACAAGGGTG
GCGAGGACGCGTTCTTCGTGCAGTGCAACGCGCTGGGTGTGTTTGACGGA
GTGGGCGGATGGGCGAGCATCGGTGTGGACGCCGGGCTGTACTCAAAACA
ACTGGCGCAGCTGACTGGGGAGCACATTTATAAACAGGGCGCGTGCTCTG
TGAAGGAGGCGCTGAAACAGGCGGCGGCGTGCAATGAGGCAATTGGGTCG
AGCACAGCGTGCGTGGTGGGCATTGATGACGGCAAACTGTTTGGCGTAAA
CCTCGGCGACTCGGGACTGGTTGTGATTCGCGACGGACGCATCATCTACA
AAACGGTGGAGCAGCAGCACTACTTCAACTGCCCGTACCAGATTGGAACC
GACTCGCTGGACACGGTGGAGGTGGGCAACTCCATCGAGGTGGGGCTGCG
GCACGGCGACTGGGTGATCATGGGCACGGACGGACTATGGGACAACGTGT
TCGCCGACAAGATCGTGGAGGTGGTCGCACAACACGAACACGCAGTGCAC
AACACGGGCGCGCACGAAGAAGACGACGCGGCGCACAAGAGCGAGGAGCA
GCAGAACGACATGAGGTGGGAGGAGGCCAGTGTGGTGAGCGACTGCGGTA
GCAACAGCGACGAACGGTGTGTGGCACGAGCTAACGATTGTAGCAAACGG
GCGGAAATTGTGGCGGAAAAGCTGGGCGAGGTGGCCGTCAAGGTGGCTAA
CAACGAACGCTCTTCGTCGCCGTTTGCTGTTAATGCGCGCAACGCAGGGC
ACGTGTTTATGGGCGGCAAGGTGGACGATATCACCATCATCTCCGCGCTG
GTTGTGGACGGCGCGCGCAGCGACGACCTCACGCGTAGCGACCACCACCC
GCCGCCGCCGTGA

Coding sequence (CDS) from alignment at tig00004437_pilon:186392..187654+

>Gchil1219.t1 ID=Gchil1219.t1|Name=Gchil1219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00004437_pilon:186392..187654+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTGCACAGCAACTtcgtctccgtccgcgtcgtcgtcgtcgCCCGT
CACACCCGCGACGCCCACCGTAGCAGCCGCTGCAGAGCCGCCGCGGCGAC
AGAACCGCGCCACGCTGGACAAGCGTGCTCTGGCGGCGGCCGCACTCGCC
GGCGGGCTGGCCACGGCCGGTGGCGTGGTTGGTGTTAGTAATAGCGGCGA
TGATAACGATGAAAAGGAGAATACAAACATACAATGCTCTGGGGATGACG
GCACGGCGCTGTCTTCGTCCACGGTGACGAGCGACGACTCGACGCAACAG
CACGATGGAGGGTGCACATCTGTGACGGCGCGCGCACGGTCGTTGGTGTT
CCGGTCGGCAGTGGTGAGCATTCCGCACCCGGACAAGGCGGACAAGGGTG
GCGAGGACGCGTTCTTCGTGCAGTGCAACGCGCTGGGTGTGTTTGACGGA
GTGGGCGGATGGGCGAGCATCGGTGTGGACGCCGGGCTGTACTCAAAACA
ACTGGCGCAGCTGACTGGGGAGCACATTTATAAACAGGGCGCGTGCTCTG
TGAAGGAGGCGCTGAAACAGGCGGCGGCGTGCAATGAGGCAATTGGGTCG
AGCACAGCGTGCGTGGTGGGCATTGATGACGGCAAACTGTTTGGCGTAAA
CCTCGGCGACTCGGGACTGGTTGTGATTCGCGACGGACGCATCATCTACA
AAACGGTGGAGCAGCAGCACTACTTCAACTGCCCGTACCAGATTGGAACC
GACTCGCTGGACACGGTGGAGGTGGGCAACTCCATCGAGGTGGGGCTGCG
GCACGGCGACTGGGTGATCATGGGCACGGACGGACTATGGGACAACGTGT
TCGCCGACAAGATCGTGGAGGTGGTCGCACAACACGAACACGCAGTGCAC
AACACGGGCGCGCACGAAGAAGACGACGCGGCGCACAAGAGCGAGGAGCA
GCAGAACGACATGAGGTGGGAGGAGGCCAGTGTGGTGAGCGACTGCGGTA
GCAACAGCGACGAACGGTGTGTGGCACGAGCTAACGATTGTAGCAAACGG
GCGGAAATTGTGGCGGAAAAGCTGGGCGAGGTGGCCGTCAAGGTGGCTAA
CAACGAACGCTCTTCGTCGCCGTTTGCTGTTAATGCGCGCAACGCAGGGC
ACGTGTTTATGGGCGGCAAGGTGGACGATATCACCATCATCTCCGCGCTG
GTTGTGGACGGCGCGCGCAGCGACGACCTCACGCGTAGCGACCACCACCC
GCCGCCGCCGTGA