Gchil1217.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1217.t1
Unique Name	Gchil1217.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:183004..183915 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272952.HpaP810560
Max annot lvl	4776\|Peronosporales
Evalue	8.98e-09
EggNOG OGs	28MBJ@1\|root,2QTUZ@2759\|Eukaryota,3Q7VW@4776\|Peronosporales
Description	Phosphate acyltransferases
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1217	Gchil1217	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 183004..183915 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1217.t1.start1	Gchil1217.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 183004..183006 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1217.t1.CDS1	Gchil1217.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 183004..183915 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1217.t1.exon1	Gchil1217.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 183004..183915 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1217.t1.stop1	Gchil1217.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 183913..183915 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1217.t1	Gchil1217.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 183004..183915 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:183004..183915+
coding sequence from alignment at tig00004437_pilon:183004..183915+

mRNA sequence

>Gchil1217.t1 ID=Gchil1217.t1|Name=Gchil1217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MEKYRSTSDPSTGIHPFIPPTTNIFSPPLRPILTLLRLPIFLLLFVPYSL
LNTLLFLLPSILSYPLRRILDKLFLPYILLSLSVLPTYATLEQPRVRDAA
RGKHPSRFDIILINVSSPIDILLVSFSYSPTFAIASSQDPTLLHSLTLLQ
AFTTISLTPPHPTSAPKPPQALLGNGPLCVLAEGCSTNGKGVLRFSYKLH
TASIPEPCVIYAAGISRTSKGSACRTTQSLSKTLLHAVGEWKISPRIRVS
AVPREGGDHQASVAALAGVPALKIGHETAQQFAQHWKQTCSSSRTSSSKA
HTH*

spliced messenger RNA

>Gchil1217.t1 ID=Gchil1217.t1|Name=Gchil1217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004437_pilon:183004..183915+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGTACCGCTCCACGTCCGATCCATCAACCGGCATCCACCCCTT
CATCCCACCCACCACAAACATCTTCAGTCCGCCGCTTCGCCCGATCCTCA
CCCTCCTCCGTTTACCAATCTTTCTCCTTCTCTTCGTCCCGTACTCGCTC
CTCAACACGCTCTTATTCTTGCTTCCTTCAATTCTGTCATATCCGCTGCG
TCGAATTCTCGACAAACTGTTTCTTCCCTACATTCTTCTCTCTCTTTCAG
TCTTGCCAACCTACGCCACCCTCGAACAACCGCGCGTGAGGGACGCCGCC
CGGGGAAAGCATCCATCGCGTTTTGATATCATTCTCATTAACGTCTCCTC
GCCGATTGACATTTTGCTCGTGTCGTTTTCATACTCGCCAACCTTTGCGA
TTGCCTCCAGCCAAGATCCAACTCTCCTGCATTCGCTAACCCTTCTCCAA
GCGTTTACAACCATAAGTTTGACGCCACCGCACCCAACCTCCGCGCCGAA
ACCGCCGCAGGCCCTTCTCGGAAACGGTCCGCTCTGCGTTCTGGCAGAAG
GCTGTTCAACAAACGGCAAGGGCGTCCTGCGTTTTTCGTACAAACTGCAC
ACAGCTTCCATTCCCGAGCCATGCGTGATTTACGCCGCGGGTATATCACG
CACATCGAAGGGCTCAGCGTGCAGAACGACGCAGTCGTTGTCAAAAACCT
TGCTCCATGCCGTGGGGGAATGGAAGATATCTCCGCGAATTCGCGTGTCT
GCCGTGCCACGAGAGGGCGGCGATCACCAAGCGTCCGTCGCCGCGCTCGC
CGGTGTGCCGGCGCTAAAAATCGGTCATGAAACTGCGCAGCAGTTTGCGC
AACATTGGAAACAGACTTGTAGTAGTAGTCGTACTAGCAGCAGCAAGGCA
CATACTCACTAA

protein sequence of Gchil1217.t1

>Gchil1217.t1 ID=Gchil1217.t1|Name=Gchil1217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MEKYRSTSDPSTGIHPFIPPTTNIFSPPLRPILTLLRLPIFLLLFVPYSL
LNTLLFLLPSILSYPLRRILDKLFLPYILLSLSVLPTYATLEQPRVRDAA
RGKHPSRFDIILINVSSPIDILLVSFSYSPTFAIASSQDPTLLHSLTLLQ
AFTTISLTPPHPTSAPKPPQALLGNGPLCVLAEGCSTNGKGVLRFSYKLH
TASIPEPCVIYAAGISRTSKGSACRTTQSLSKTLLHAVGEWKISPRIRVS
AVPREGGDHQASVAALAGVPALKIGHETAQQFAQHWKQTCSSSRTSSSKA
HTH*

mRNA from alignment at tig00004437_pilon:183004..183915+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1217.t1 ID=Gchil1217.t1|Name=Gchil1217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004437_pilon:183004..183915+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGTACCGCTCCACGTCCGATCCATCAACCGGCATCCACCCCTT
CATCCCACCCACCACAAACATCTTCAGTCCGCCGCTTCGCCCGATCCTCA
CCCTCCTCCGTTTACCAATCTTTCTCCTTCTCTTCGTCCCGTACTCGCTC
CTCAACACGCTCTTATTCTTGCTTCCTTCAATTCTGTCATATCCGCTGCG
TCGAATTCTCGACAAACTGTTTCTTCCCTACATTCTTCTCTCTCTTTCAG
TCTTGCCAACCTACGCCACCCTCGAACAACCGCGCGTGAGGGACGCCGCC
CGGGGAAAGCATCCATCGCGTTTTGATATCATTCTCATTAACGTCTCCTC
GCCGATTGACATTTTGCTCGTGTCGTTTTCATACTCGCCAACCTTTGCGA
TTGCCTCCAGCCAAGATCCAACTCTCCTGCATTCGCTAACCCTTCTCCAA
GCGTTTACAACCATAAGTTTGACGCCACCGCACCCAACCTCCGCGCCGAA
ACCGCCGCAGGCCCTTCTCGGAAACGGTCCGCTCTGCGTTCTGGCAGAAG
GCTGTTCAACAAACGGCAAGGGCGTCCTGCGTTTTTCGTACAAACTGCAC
ACAGCTTCCATTCCCGAGCCATGCGTGATTTACGCCGCGGGTATATCACG
CACATCGAAGGGCTCAGCGTGCAGAACGACGCAGTCGTTGTCAAAAACCT
TGCTCCATGCCGTGGGGGAATGGAAGATATCTCCGCGAATTCGCGTGTCT
GCCGTGCCACGAGAGGGCGGCGATCACCAAGCGTCCGTCGCCGCGCTCGC
CGGTGTGCCGGCGCTAAAAATCGGTCATGAAACTGCGCAGCAGTTTGCGC
AACATTGGAAACAGACTTGTAGTAGTAGTCGTACTAGCAGCAGCAAGGCA
CATACTCACTAA

Coding sequence (CDS) from alignment at tig00004437_pilon:183004..183915+

>Gchil1217.t1 ID=Gchil1217.t1|Name=Gchil1217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00004437_pilon:183004..183915+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGTACCGCTCCACGTCCGATCCATCAACCGGCATCCACCCCTT
CATCCCACCCACCACAAACATCTTCAGTCCGCCGCTTCGCCCGATCCTCA
CCCTCCTCCGTTTACCAATCTTTCTCCTTCTCTTCGTCCCGTACTCGCTC
CTCAACACGCTCTTATTCTTGCTTCCTTCAATTCTGTCATATCCGCTGCG
TCGAATTCTCGACAAACTGTTTCTTCCCTACATTCTTCTCTCTCTTTCAG
TCTTGCCAACCTACGCCACCCTCGAACAACCGCGCGTGAGGGACGCCGCC
CGGGGAAAGCATCCATCGCGTTTTGATATCATTCTCATTAACGTCTCCTC
GCCGATTGACATTTTGCTCGTGTCGTTTTCATACTCGCCAACCTTTGCGA
TTGCCTCCAGCCAAGATCCAACTCTCCTGCATTCGCTAACCCTTCTCCAA
GCGTTTACAACCATAAGTTTGACGCCACCGCACCCAACCTCCGCGCCGAA
ACCGCCGCAGGCCCTTCTCGGAAACGGTCCGCTCTGCGTTCTGGCAGAAG
GCTGTTCAACAAACGGCAAGGGCGTCCTGCGTTTTTCGTACAAACTGCAC
ACAGCTTCCATTCCCGAGCCATGCGTGATTTACGCCGCGGGTATATCACG
CACATCGAAGGGCTCAGCGTGCAGAACGACGCAGTCGTTGTCAAAAACCT
TGCTCCATGCCGTGGGGGAATGGAAGATATCTCCGCGAATTCGCGTGTCT
GCCGTGCCACGAGAGGGCGGCGATCACCAAGCGTCCGTCGCCGCGCTCGC
CGGTGTGCCGGCGCTAAAAATCGGTCATGAAACTGCGCAGCAGTTTGCGC
AACATTGGAAACAGACTTGTAGTAGTAGTCGTACTAGCAGCAGCAAGGCA
CATACTCACTAA