Gchil1207.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1207.t1
Unique NameGchil1207.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:152831..154891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708137.1
Preferred nameHSP60
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K02940,ko:K04077
KEGG Pathwayko03010,ko03018,ko04212,ko04940,ko05134,ko05152,map03010,map03018,map04212,map04940,map05134,map05152
KEGG ModuleM00177
GOsGO:0000003,GO:0000166,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009453,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0017076,GO:0019899,GO:0019954,GO:0022626,GO:0030554,GO:0030587,GO:0031090,GO:0031288,GO:0031967,GO:0031974,GO:0031975,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042788,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044183,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046686,GO:0046872,GO:0046907,GO:0046914,GO:0046956,GO:0048856,GO:0050896,GO:0051082,GO:0051117,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0052128,GO:0055085,GO:0061077,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090702,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1990542,GO:1990904
Evalue2.56e-278
EggNOG OGsCOG0459@1|root,KOG0356@2759|Eukaryota
Descriptionprotein refolding
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03029,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1207Gchil1207Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 152831..154891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1Gchil1207.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 152831..154891 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1.start1Gchil1207.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 152831..152833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1.CDS1Gchil1207.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 152831..153343 +
Gchil1207.t1.CDS2Gchil1207.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 153671..154891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1.exon1Gchil1207.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 152831..153343 +
Gchil1207.t1.exon2Gchil1207.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 153671..154891 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1.intron1Gchil1207.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 153344..153670 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1207.t1.stop1Gchil1207.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 154889..154891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1207.t1 ID=Gchil1207.t1|Name=Gchil1207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=578bp
MLPLVFGASRARAPAARFVRVARAFATGKDLRFSTEARNLMAKGVDSLAD
AVEVTLGPKGRNVVIEKSFGSPQITKDGVTVAKNIEFKDKHMNLGAQLVR
SVANDTNNIAGDGTTTATVLTRAIYSEGIKAVAAGMNPMDLKRGIDLAVE
NVLGALKTMTQPISTKAEISSVATISANGDEKVGHLIAEAMEKVGREGTI
TVSDGKTIHDELDIVEGMKFDRGYISPYFVTDPKAQKVDFENAFILTVEK
KVSTVASILNILEGVMKSQRPLLIIAEDVESEALATLVVNKLRLGIKVCA
VKAPGFGDRRKANLEDIAIMTGAQLVSSDLDMKLEDVTLNDLGTAKKITI
TKDDTIILDGSGDKKAINDRCDMLRDSLESATSEYDKEKIHERLAKLSGG
VAVIKVGGVSEVEVSERKDRFTDALNATRAAVEEGIVPGGGTALLLSSRD
ALKELKGANFDQDVGIDIVRKALRVPCYSIARNAGVEGSVVVERLLNHQG
DYPLGYNAQTGEYQDLVKAGIIDPTKVQRTALEQAASVAGLMATTECMVV
DNPKEESADMAAMAAAAGGGMGGGMGF*
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spliced messenger RNA

>Gchil1207.t1 ID=Gchil1207.t1|Name=Gchil1207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004437_pilon:152831..154891+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCGCTCGTGTTTGGCGCGTCGCGTGCACGCGCACCTGCCGCACG
CTTTGTGCGTGTTGCGCGTGCTTTTGCCACGGGAAAGGACTTACGTTTCT
CCACCGAGGCACGAAATCTAATGGCTAAGGGTGTTGATTCTTTGGCTGAT
GCTGTCGAGGTTACGTTGGGTCCAAAGGGTCGGAACGTCGTCATTGAGAA
GAGCTTTGGCTCGCCGCAGATCACTAAGGATGGTGTCACTGTTGCTAAGA
ACATCGAATTCAAGGATAAGCACATGAACCTTGGTGCACAGCTTGTGCGT
AGCGTTGCTAATGATACTAATAATATTGCCGGCGATGGTACTACCACTGC
TACCGTTCTCACCAGAGCCATCTACTCGGAAGGTATCAAGGCCGTTGCCG
CAGGCATGAATCCCATGGATCTCAAACGTGGCATTGATCTTGCCGTCGAA
AACGTCTTGGGTGCACTTAAGACCATGACTCAGCCCATCAGCACCAAGGC
TGAAATAAGCTCCGTTGCCACCATTTCAGCCAATGGCGATGAAAAGGTTG
GTCATCTCATTGCCGAGGCAATGGAAAAAGTCGGTCGGGAGGGAACCATC
ACCGTGTCGGACGGAAAGACCATCCACGACGAACTCGACATTGTCGAGGG
CATGAAGTTCGACAGAGGTTACATCTCCCCCTACTTTGTCACTGACCCCA
AAGCGCAAAAAGTCGACTTTGAGAACGCCTTTATCCTCACCGTCGAGAAG
AAGGTTTCCACCGTCGCCTCCATCCTCAACATCCTGGAAGGGGTCATGAA
ATCGCAGCGTCCATTGCTCATCATTGCCGAGGATGTGGAGAGCGAGGCGC
TTGCCACGCTTGTCGTTAACAAGCTCCGCCTCGGCATCAAGGTCTGCGCC
GTCAAGGCCCCTGGCTTTGGTGACCGCCGCAAGGCCAACCTCGAGGACAT
TGCCATCATGACCGGCGCCCAGCTCGTCAGCAGCGACCTGGACATGAAGC
TGGAGGACGTAACCCTCAACGACCTCGGGACTGCCAAGAAGATCACCATC
ACCAAAGACGATACCATCATCCTCGACGGCAGCGGCGACAAGAAGGCCAT
CAACGACAGATGCGATATGTTGAGAGACTCGCTTGAGAGCGCCACCAGCG
AGTATGACAAGGAGAAGATTCATGAAAGGTTGGCCAAGCTCAGCGGCGGT
GTAGCCGTCATCAAGGTCGGTGGCGTCAGCGAAGTGGAGGTATCCGAAAG
AAAGGATCGCTTCACTGACGCGCTCAACGCCACCCGCGCCGCCGTCGAGG
AGGGCATTGTGCCGGGGGGCGGCACTGCGCTGCTGCTCTCTTCCAGGGAT
GCTCTCAAGGAACTCAAGGGCGCCAATTTTGACCAGGACGTTGGAATCGA
CATTGTGCGCAAGGCGTTGAGAGTACCTTGCTACTCGATTGCCCGCAACG
CTGGTGTCGAGGGATCTGTAGTTGTGGAGAGGCTGCTGAATCATCAAGGC
GACTACCCGCTCGGCTACAACGCGCAGACCGGCgagtaccaggatcttgt
caaggcaggtatcattgacccgaccaaggttcagagaactgctctgGAAC
AAGCAGCCTCTGTGGCTGGACTCATGGCTACAACCGAGTGTATGGTCGTT
GACAACCCCAAGGAAGAGTCGGCGGACATGGCCGCTATGGCCGCCGCCGC
CGGGGGTGGCATGGGTGGCGGCATGGGCTTCTAA
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protein sequence of Gchil1207.t1

>Gchil1207.t1 ID=Gchil1207.t1|Name=Gchil1207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=578bp
MLPLVFGASRARAPAARFVRVARAFATGKDLRFSTEARNLMAKGVDSLAD
AVEVTLGPKGRNVVIEKSFGSPQITKDGVTVAKNIEFKDKHMNLGAQLVR
SVANDTNNIAGDGTTTATVLTRAIYSEGIKAVAAGMNPMDLKRGIDLAVE
NVLGALKTMTQPISTKAEISSVATISANGDEKVGHLIAEAMEKVGREGTI
TVSDGKTIHDELDIVEGMKFDRGYISPYFVTDPKAQKVDFENAFILTVEK
KVSTVASILNILEGVMKSQRPLLIIAEDVESEALATLVVNKLRLGIKVCA
VKAPGFGDRRKANLEDIAIMTGAQLVSSDLDMKLEDVTLNDLGTAKKITI
TKDDTIILDGSGDKKAINDRCDMLRDSLESATSEYDKEKIHERLAKLSGG
VAVIKVGGVSEVEVSERKDRFTDALNATRAAVEEGIVPGGGTALLLSSRD
ALKELKGANFDQDVGIDIVRKALRVPCYSIARNAGVEGSVVVERLLNHQG
DYPLGYNAQTGEYQDLVKAGIIDPTKVQRTALEQAASVAGLMATTECMVV
DNPKEESADMAAMAAAAGGGMGGGMGF*
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mRNA from alignment at tig00004437_pilon:152831..154891+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1207.t1 ID=Gchil1207.t1|Name=Gchil1207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2061bp|location=Sequence derived from alignment at tig00004437_pilon:152831..154891+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCCGCTCGTGTTTGGCGCGTCGCGTGCACGCGCACCTGCCGCACG
CTTTGTGCGTGTTGCGCGTGCTTTTGCCACGGGAAAGGACTTACGTTTCT
CCACCGAGGCACGAAATCTAATGGCTAAGGGTGTTGATTCTTTGGCTGAT
GCTGTCGAGGTTACGTTGGGTCCAAAGGGTCGGAACGTCGTCATTGAGAA
GAGCTTTGGCTCGCCGCAGATCACTAAGGATGGTGTCACTGTTGCTAAGA
ACATCGAATTCAAGGATAAGCACATGAACCTTGGTGCACAGCTTGTGCGT
AGCGTTGCTAATGATACTAATAATATTGCCGGCGATGGTACTACCACTGC
TACCGTTCTCACCAGAGCCATCTACTCGGAAGGTATCAAGGCCGTTGCCG
CAGGCATGAATCCCATGGATCTCAAACGTGGCATTGATCTTGCCGTCGAA
AACGTCTTGGGTGCACTTAAGACCATGACTCAGCCCATCAGCACCAAGGC
TGAAATAAGCTCCGTACGTTTTTCATACACTCACTCTTCCTTCTTCCCTG
GCCCCACCGCCGCAGCGCACGTTTCATTGCTGTGATGTTCCATTTGCGTT
CACGCAACCAACAGAAGTGCCATCCCCGGGCTGCCCGTTTTGGGTTCTTT
GCCCTCTGCACTGCAAGACGATTTCTTTTATAATCTAGTCATAGTTACTC
TGATTGCAACACTTTGTGCGCACAAATCTGCCGGTGCCCGCCTCCGCCTC
CCCGCCTTTTCTTCTCTCACGACTCCAGCTTTGTGTGCGTACTAACTCAC
TTTTATGCCTTTTCTTTGTCTTGTGTCATGCGCCGTGTAGGTTGCCACCA
TTTCAGCCAATGGCGATGAAAAGGTTGGTCATCTCATTGCCGAGGCAATG
GAAAAAGTCGGTCGGGAGGGAACCATCACCGTGTCGGACGGAAAGACCAT
CCACGACGAACTCGACATTGTCGAGGGCATGAAGTTCGACAGAGGTTACA
TCTCCCCCTACTTTGTCACTGACCCCAAAGCGCAAAAAGTCGACTTTGAG
AACGCCTTTATCCTCACCGTCGAGAAGAAGGTTTCCACCGTCGCCTCCAT
CCTCAACATCCTGGAAGGGGTCATGAAATCGCAGCGTCCATTGCTCATCA
TTGCCGAGGATGTGGAGAGCGAGGCGCTTGCCACGCTTGTCGTTAACAAG
CTCCGCCTCGGCATCAAGGTCTGCGCCGTCAAGGCCCCTGGCTTTGGTGA
CCGCCGCAAGGCCAACCTCGAGGACATTGCCATCATGACCGGCGCCCAGC
TCGTCAGCAGCGACCTGGACATGAAGCTGGAGGACGTAACCCTCAACGAC
CTCGGGACTGCCAAGAAGATCACCATCACCAAAGACGATACCATCATCCT
CGACGGCAGCGGCGACAAGAAGGCCATCAACGACAGATGCGATATGTTGA
GAGACTCGCTTGAGAGCGCCACCAGCGAGTATGACAAGGAGAAGATTCAT
GAAAGGTTGGCCAAGCTCAGCGGCGGTGTAGCCGTCATCAAGGTCGGTGG
CGTCAGCGAAGTGGAGGTATCCGAAAGAAAGGATCGCTTCACTGACGCGC
TCAACGCCACCCGCGCCGCCGTCGAGGAGGGCATTGTGCCGGGGGGCGGC
ACTGCGCTGCTGCTCTCTTCCAGGGATGCTCTCAAGGAACTCAAGGGCGC
CAATTTTGACCAGGACGTTGGAATCGACATTGTGCGCAAGGCGTTGAGAG
TACCTTGCTACTCGATTGCCCGCAACGCTGGTGTCGAGGGATCTGTAGTT
GTGGAGAGGCTGCTGAATCATCAAGGCGACTACCCGCTCGGCTACAACGC
GCAGACCGGCgagtaccaggatcttgtcaaggcaggtatcattgacccga
ccaaggttcagagaactgctctgGAACAAGCAGCCTCTGTGGCTGGACTC
ATGGCTACAACCGAGTGTATGGTCGTTGACAACCCCAAGGAAGAGTCGGC
GGACATGGCCGCTATGGCCGCCGCCGCCGGGGGTGGCATGGGTGGCGGCA
TGGGCTTCTAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:152831..154891+

>Gchil1207.t1 ID=Gchil1207.t1|Name=Gchil1207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00004437_pilon:152831..154891+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCCGCTCGTGTTTGGCGCGTCGCGTGCACGCGCACCTGCCGCACG
CTTTGTGCGTGTTGCGCGTGCTTTTGCCACGGGAAAGGACTTACGTTTCT
CCACCGAGGCACGAAATCTAATGGCTAAGGGTGTTGATTCTTTGGCTGAT
GCTGTCGAGGTTACGTTGGGTCCAAAGGGTCGGAACGTCGTCATTGAGAA
GAGCTTTGGCTCGCCGCAGATCACTAAGGATGGTGTCACTGTTGCTAAGA
ACATCGAATTCAAGGATAAGCACATGAACCTTGGTGCACAGCTTGTGCGT
AGCGTTGCTAATGATACTAATAATATTGCCGGCGATGGTACTACCACTGC
TACCGTTCTCACCAGAGCCATCTACTCGGAAGGTATCAAGGCCGTTGCCG
CAGGCATGAATCCCATGGATCTCAAACGTGGCATTGATCTTGCCGTCGAA
AACGTCTTGGGTGCACTTAAGACCATGACTCAGCCCATCAGCACCAAGGC
TGAAATAAGCTCCGTTGCCACCATTTCAGCCAATGGCGATGAAAAGGTTG
GTCATCTCATTGCCGAGGCAATGGAAAAAGTCGGTCGGGAGGGAACCATC
ACCGTGTCGGACGGAAAGACCATCCACGACGAACTCGACATTGTCGAGGG
CATGAAGTTCGACAGAGGTTACATCTCCCCCTACTTTGTCACTGACCCCA
AAGCGCAAAAAGTCGACTTTGAGAACGCCTTTATCCTCACCGTCGAGAAG
AAGGTTTCCACCGTCGCCTCCATCCTCAACATCCTGGAAGGGGTCATGAA
ATCGCAGCGTCCATTGCTCATCATTGCCGAGGATGTGGAGAGCGAGGCGC
TTGCCACGCTTGTCGTTAACAAGCTCCGCCTCGGCATCAAGGTCTGCGCC
GTCAAGGCCCCTGGCTTTGGTGACCGCCGCAAGGCCAACCTCGAGGACAT
TGCCATCATGACCGGCGCCCAGCTCGTCAGCAGCGACCTGGACATGAAGC
TGGAGGACGTAACCCTCAACGACCTCGGGACTGCCAAGAAGATCACCATC
ACCAAAGACGATACCATCATCCTCGACGGCAGCGGCGACAAGAAGGCCAT
CAACGACAGATGCGATATGTTGAGAGACTCGCTTGAGAGCGCCACCAGCG
AGTATGACAAGGAGAAGATTCATGAAAGGTTGGCCAAGCTCAGCGGCGGT
GTAGCCGTCATCAAGGTCGGTGGCGTCAGCGAAGTGGAGGTATCCGAAAG
AAAGGATCGCTTCACTGACGCGCTCAACGCCACCCGCGCCGCCGTCGAGG
AGGGCATTGTGCCGGGGGGCGGCACTGCGCTGCTGCTCTCTTCCAGGGAT
GCTCTCAAGGAACTCAAGGGCGCCAATTTTGACCAGGACGTTGGAATCGA
CATTGTGCGCAAGGCGTTGAGAGTACCTTGCTACTCGATTGCCCGCAACG
CTGGTGTCGAGGGATCTGTAGTTGTGGAGAGGCTGCTGAATCATCAAGGC
GACTACCCGCTCGGCTACAACGCGCAGACCGGCgagtaccaggatcttgt
caaggcaggtatcattgacccgaccaaggttcagagaactgctctgGAAC
AAGCAGCCTCTGTGGCTGGACTCATGGCTACAACCGAGTGTATGGTCGTT
GACAACCCCAAGGAAGAGTCGGCGGACATGGCCGCTATGGCCGCCGCCGC
CGGGGGTGGCATGGGTGGCGGCATGGGCTTCTAA
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