Gchil1205.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1205.t1
Unique NameGchil1205.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:148317..149651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1205Gchil1205Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 148317..149651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1Gchil1205.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 148317..149651 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1.start1Gchil1205.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 148317..148319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1.CDS1Gchil1205.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 148317..148843 +
Gchil1205.t1.CDS2Gchil1205.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 149195..149651 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1.exon1Gchil1205.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 148317..148843 +
Gchil1205.t1.exon2Gchil1205.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 149195..149651 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1.intron1Gchil1205.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 148844..149194 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1205.t1.stop1Gchil1205.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 149649..149651 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1205.t1 ID=Gchil1205.t1|Name=Gchil1205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MNHVHLQNSGVFSPITSCAQETLVPESPDRTNMQQQQQQRQSCEMKHKEP
SAVANTSRPARRTTRNPLSIVMGGIQRDPPLYVRRGAPGAPNDEEKEKEA
AITALELSIMGSALVLTLSLQVEEVVGSRGGFGNSTRDTEVGFLFVGASA
LSFALGFYSIVTAAVMLLSIVATPNMNAQAMLKKMSWWLMAPRLCTLAAA
GCLGVKALIAHFLGLERSASILGAVVIGIGMLLTGVATATICQSLVDFSA
RHVDDEGDSDNPDVVSQSSKDGGKESCTAGALKGGQTVHNVMGGEDVLGN
GHQASSCRTYHVRHCREERRTTHRSLP*
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spliced messenger RNA

>Gchil1205.t1 ID=Gchil1205.t1|Name=Gchil1205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004437_pilon:148317..149651+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACGTTCACCTTCAAAACAGCGGCGTTTTCTCGCCGATTACTTC
TTGCGCCCAAGAGACCCTTGTACCGGAATCCCCCGACAGGACAAACATgc
agcagcagcagcagcagcggcaATCTTGTGAGATGAAACACAAAGAACCA
TCAGCGGTGGCTAATACGAGCAGACCAGCGCGTCGAACAACGCGAAACCC
GCTCTCAATAGTCATGGGCGGCATTCAGAGAGACCCGCCGCTGTATGTGC
GAAGAGGGGCGCCTGGAGCGCCCAACGACGAAGAGAAGGAGAAGGAGGCC
GCAATAACTGCACTGGAGCTGTCAATCATGGGGAGCGCTCTCGTGCTCAC
CCTGAGTTTACAGGTTGAAGAAGTGGTAGGGAGCAGGGGTGGATTCGGGA
ATTCCACCCGCGACACTGAAGTTGGATTCTTGTTTGTCGGTGCGTCCGCG
CTCTCGTTTGCGCTTGGGTTTTATTCCATTGTGACAGCGGCTGTCATGCT
GCTTTCCATTGTTGCAACGCCAAACATGAATGCACAGGCCATGCTGAAGA
AGATGTCATGGTGGCTTATGGCGCCGCGATTATGCACGCTCGCTGCCGCA
GGTTGTCTCGGCGTCAAAGCTCTGATCGCGCACTTCCTCGGCCTCGAGAG
AAGCGCCTCAATCCTCGGAGCGGTAGTAATAGGCATCGGCATGCTGCTCA
CAGGCGTGGCAACCGCGACAATTTGCCAATCTCTGGTTGACTTTAGCGCA
CGACACGTCGACGACGAAGGGGACAGCGACAATCCCGACGTCGTCAGCCA
GTCCAGCAAGGACGGTGGGAAAGAAAGTTGCACGGCGGGTGCATTGAAGG
GAGGCCAAACGGTGCACAACGTAATGGGTGGGGAAGACGTGTTGGGGAAT
GGGCATCAAGCGTCGTCGTGTAGGACATACCACGTGCGACATTGCCGCGA
GGAGCGGCGGACTACGCACCGATCGCTTCCATAA
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protein sequence of Gchil1205.t1

>Gchil1205.t1 ID=Gchil1205.t1|Name=Gchil1205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MNHVHLQNSGVFSPITSCAQETLVPESPDRTNMQQQQQQRQSCEMKHKEP
SAVANTSRPARRTTRNPLSIVMGGIQRDPPLYVRRGAPGAPNDEEKEKEA
AITALELSIMGSALVLTLSLQVEEVVGSRGGFGNSTRDTEVGFLFVGASA
LSFALGFYSIVTAAVMLLSIVATPNMNAQAMLKKMSWWLMAPRLCTLAAA
GCLGVKALIAHFLGLERSASILGAVVIGIGMLLTGVATATICQSLVDFSA
RHVDDEGDSDNPDVVSQSSKDGGKESCTAGALKGGQTVHNVMGGEDVLGN
GHQASSCRTYHVRHCREERRTTHRSLP*
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mRNA from alignment at tig00004437_pilon:148317..149651+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1205.t1 ID=Gchil1205.t1|Name=Gchil1205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00004437_pilon:148317..149651+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCACGTTCACCTTCAAAACAGCGGCGTTTTCTCGCCGATTACTTC
TTGCGCCCAAGAGACCCTTGTACCGGAATCCCCCGACAGGACAAACATgc
agcagcagcagcagcagcggcaATCTTGTGAGATGAAACACAAAGAACCA
TCAGCGGTGGCTAATACGAGCAGACCAGCGCGTCGAACAACGCGAAACCC
GCTCTCAATAGTCATGGGCGGCATTCAGAGAGACCCGCCGCTGTATGTGC
GAAGAGGGGCGCCTGGAGCGCCCAACGACGAAGAGAAGGAGAAGGAGGCC
GCAATAACTGCACTGGAGCTGTCAATCATGGGGAGCGCTCTCGTGCTCAC
CCTGAGTTTACAGGTTGAAGAAGTGGTAGGGAGCAGGGGTGGATTCGGGA
ATTCCACCCGCGACACTGAAGTTGGATTCTTGTTTGTCGGTGCGTCCGCG
CTCTCGTTTGCGCTTGGGTTTTATTCCATTGTGACAGCGGCTGTCATGCT
GCTTTCCATTGTTGCAACGCCAAACATGTAAGTTGGAAAGAGACATTCCA
TCGCGCGTAACGAAATCAAACGAGAGACGACTACTCTGCATCCTGTGACC
CGACACGCGAAGTGAGTGTTGGGGAGGAGGCAAGAGACGCGACTCTTGCA
GCAGTCGTGTGACGAACGTACCGTAGTACAGTCTTTATCAACAGTTGCCT
CTTTCATCGTGCGCCACTTTCATACgagagagagagagagagagagagag
TTGAACGCTAACCAAATCTTGAATATGTATGAACACATTGGTTGTTTGAC
CGTCGTGTGTTGTCTGTGACGTACGGTTGTTTTCACGGGAATTGTCGGAA
TGGGGTGGGGGTTGAACTCATGGTGAAGGAATGCACAGGCCATGCTGAAG
AAGATGTCATGGTGGCTTATGGCGCCGCGATTATGCACGCTCGCTGCCGC
AGGTTGTCTCGGCGTCAAAGCTCTGATCGCGCACTTCCTCGGCCTCGAGA
GAAGCGCCTCAATCCTCGGAGCGGTAGTAATAGGCATCGGCATGCTGCTC
ACAGGCGTGGCAACCGCGACAATTTGCCAATCTCTGGTTGACTTTAGCGC
ACGACACGTCGACGACGAAGGGGACAGCGACAATCCCGACGTCGTCAGCC
AGTCCAGCAAGGACGGTGGGAAAGAAAGTTGCACGGCGGGTGCATTGAAG
GGAGGCCAAACGGTGCACAACGTAATGGGTGGGGAAGACGTGTTGGGGAA
TGGGCATCAAGCGTCGTCGTGTAGGACATACCACGTGCGACATTGCCGCG
AGGAGCGGCGGACTACGCACCGATCGCTTCCATAA
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Coding sequence (CDS) from alignment at tig00004437_pilon:148317..149651+

>Gchil1205.t1 ID=Gchil1205.t1|Name=Gchil1205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004437_pilon:148317..149651+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCACGTTCACCTTCAAAACAGCGGCGTTTTCTCGCCGATTACTTC
TTGCGCCCAAGAGACCCTTGTACCGGAATCCCCCGACAGGACAAACATgc
agcagcagcagcagcagcggcaATCTTGTGAGATGAAACACAAAGAACCA
TCAGCGGTGGCTAATACGAGCAGACCAGCGCGTCGAACAACGCGAAACCC
GCTCTCAATAGTCATGGGCGGCATTCAGAGAGACCCGCCGCTGTATGTGC
GAAGAGGGGCGCCTGGAGCGCCCAACGACGAAGAGAAGGAGAAGGAGGCC
GCAATAACTGCACTGGAGCTGTCAATCATGGGGAGCGCTCTCGTGCTCAC
CCTGAGTTTACAGGTTGAAGAAGTGGTAGGGAGCAGGGGTGGATTCGGGA
ATTCCACCCGCGACACTGAAGTTGGATTCTTGTTTGTCGGTGCGTCCGCG
CTCTCGTTTGCGCTTGGGTTTTATTCCATTGTGACAGCGGCTGTCATGCT
GCTTTCCATTGTTGCAACGCCAAACATGAATGCACAGGCCATGCTGAAGA
AGATGTCATGGTGGCTTATGGCGCCGCGATTATGCACGCTCGCTGCCGCA
GGTTGTCTCGGCGTCAAAGCTCTGATCGCGCACTTCCTCGGCCTCGAGAG
AAGCGCCTCAATCCTCGGAGCGGTAGTAATAGGCATCGGCATGCTGCTCA
CAGGCGTGGCAACCGCGACAATTTGCCAATCTCTGGTTGACTTTAGCGCA
CGACACGTCGACGACGAAGGGGACAGCGACAATCCCGACGTCGTCAGCCA
GTCCAGCAAGGACGGTGGGAAAGAAAGTTGCACGGCGGGTGCATTGAAGG
GAGGCCAAACGGTGCACAACGTAATGGGTGGGGAAGACGTGTTGGGGAAT
GGGCATCAAGCGTCGTCGTGTAGGACATACCACGTGCGACATTGCCGCGA
GGAGCGGCGGACTACGCACCGATCGCTTCCATAA
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