Gchil1204.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1204.t1
Unique Name	Gchil1204.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:146498..147691 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008620757.1
PFAMs	Lactamase_B_2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00296
KEGG ko	ko:K06167
KEGG Reaction	R10205
KEGG Pathway	ko00440,map00440
Evalue	6.89e-48
EggNOG OGs	COG1235@1\|root,2QWBK@2759\|Eukaryota
EC	3.1.4.55
Description	Beta-lactamase superfamily domain
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1204	Gchil1204	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 146498..147691 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1204.t1.start1	Gchil1204.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 146498..146500 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1204.t1.CDS1	Gchil1204.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 146498..147691 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1204.t1.exon1	Gchil1204.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 146498..147691 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1204.t1.stop1	Gchil1204.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 147689..147691 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1204.t1	Gchil1204.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 146498..147691 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:146498..147691+
coding sequence from alignment at tig00004437_pilon:146498..147691+

mRNA sequence

>Gchil1204.t1 ID=Gchil1204.t1|Name=Gchil1204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=398bp
MTADATYKSPQTTVNISSENSLAFYASPKGSQMGLEPSQSLNGEPQRETG
PFASHSAFVSLPAATMSVSKSFSDSPNEFIVLGSGVSTSIPKINCITRPS
EEKPCLVCRKAFEDPFSKERRNNVCALVRHSGRTILIDCGKTMRDAMMRH
LPIIGVRDVDAIVLTHGHADAVLGLDDARDLQRGSVRVMENGKLVRRRPA
PTPIYLNEETMDVCRRVFPYLMPPSEAAKNGQRVKKDIPRRVAALDWKVF
DESQYLTPFYPLKDAGIEFTPIKMWHGGEYVCMGYLIRLEETPRSMEKVI
AYLSDLDALPTESLEFLKGLPRIDLLVVDLLSDSSNLSHLNRDGAIDLVR
ELRPCEAVAVGMTCSLGFHDEVNEELAMLQEEGINFRLAYDGERFPC*

spliced messenger RNA

>Gchil1204.t1 ID=Gchil1204.t1|Name=Gchil1204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004437_pilon:146498..147691+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCAGACGCGACATACAAGAGTCCGCAAACAACCGTAAACATCAG
CTCAGAAAATTCCCTAGCTTTTTACGCGTCCCCGAAAGGCTCGCAAATGG
GCTTAGAGCCTTCTCAATCCTTGAACGGTGAGCCACAGCGTGAAACAGGC
CCCTTTGCTTCTCACTCGGCTTTTGTTTCATTGCCAGCTGCCACAATGAG
TGTATCGAAGTCATTTTCAGACTCACCGAATGAGTTTATCGTTTTAGGAT
CTGGCGTTTCCACTTCGATTCCAAAGATAAACTGCATAACGCGACCATCT
GAGGAAAAGCCGTGCCTGGTTTGCAGAAAAGCGTTCGAAGATCCGTTTTC
GAAAGAGCGCAGAAACAACGTATGTGCTTTGGTTCGACATTCTGGAAGAA
CGATATTAATTGATTGTGGCAAGACAATGCGTGATGCTATGATGCGCCAT
TTGCCCATCATTGGTGTTCGAGATGTAGACGCCATTGTTCTCACTCACGG
ACATGCGGACGCTGTTCTGGGTTTGGATGACGCCCGAGATTTACAGAGAG
GTTCAGTTCGGGTCATGGAGAATGGTAAACTGGTTCGAAGAAGACCAGCG
CCTACTCCTATTTATCTCAATGAAGAGACGATGGATGTTTGCCGACGTGT
GTTCCCTTACCTTATGCCGCCTAGCGAAGCCGCCAAGAATGGACAACGAG
TAAAAAAGGACATTCCCAGACGAGTTGCCGCTTTGGACTGGAAAGTATTC
GACGAGAGCCAATACCTCACGCCGTTTTATCCTTTGAAGGATGCAGGCAT
TGAGTTCACTCCGATAAAAATGTGGCACGGGGGCGAATACGTGTGCATGG
GATATCTTATACGACTTGAAGAGACCCCGCGCTCGATGGAAAAGGTAATC
GCTTACCTCAGTGATCTCGACGCTCTTCCAACAGAATCGCTCGAATTTCT
CAAGGGATTGCCAAGAATTGATTTGCTCGTAGTTGATTTGCTTTCGGATT
CGTCAAATTTGTCGCACCTGAACCGCGACGGAGCAATAGATCTGGTTCGC
GAGTTGCGACCTTGCGAAGCAGTTGCTGTTGGCATGACATGCTCCCTTGG
GTTTCACGATGAAGTCAACGAAGAACTAGCAATGCTGCAGGAAGAAGGAA
TTAATTTTAGATTAGCCTACGACGGAGAGAGGTTCCCGTGCTAA

protein sequence of Gchil1204.t1

>Gchil1204.t1 ID=Gchil1204.t1|Name=Gchil1204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=398bp
MTADATYKSPQTTVNISSENSLAFYASPKGSQMGLEPSQSLNGEPQRETG
PFASHSAFVSLPAATMSVSKSFSDSPNEFIVLGSGVSTSIPKINCITRPS
EEKPCLVCRKAFEDPFSKERRNNVCALVRHSGRTILIDCGKTMRDAMMRH
LPIIGVRDVDAIVLTHGHADAVLGLDDARDLQRGSVRVMENGKLVRRRPA
PTPIYLNEETMDVCRRVFPYLMPPSEAAKNGQRVKKDIPRRVAALDWKVF
DESQYLTPFYPLKDAGIEFTPIKMWHGGEYVCMGYLIRLEETPRSMEKVI
AYLSDLDALPTESLEFLKGLPRIDLLVVDLLSDSSNLSHLNRDGAIDLVR
ELRPCEAVAVGMTCSLGFHDEVNEELAMLQEEGINFRLAYDGERFPC*

mRNA from alignment at tig00004437_pilon:146498..147691+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1204.t1 ID=Gchil1204.t1|Name=Gchil1204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004437_pilon:146498..147691+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCAGACGCGACATACAAGAGTCCGCAAACAACCGTAAACATCAG
CTCAGAAAATTCCCTAGCTTTTTACGCGTCCCCGAAAGGCTCGCAAATGG
GCTTAGAGCCTTCTCAATCCTTGAACGGTGAGCCACAGCGTGAAACAGGC
CCCTTTGCTTCTCACTCGGCTTTTGTTTCATTGCCAGCTGCCACAATGAG
TGTATCGAAGTCATTTTCAGACTCACCGAATGAGTTTATCGTTTTAGGAT
CTGGCGTTTCCACTTCGATTCCAAAGATAAACTGCATAACGCGACCATCT
GAGGAAAAGCCGTGCCTGGTTTGCAGAAAAGCGTTCGAAGATCCGTTTTC
GAAAGAGCGCAGAAACAACGTATGTGCTTTGGTTCGACATTCTGGAAGAA
CGATATTAATTGATTGTGGCAAGACAATGCGTGATGCTATGATGCGCCAT
TTGCCCATCATTGGTGTTCGAGATGTAGACGCCATTGTTCTCACTCACGG
ACATGCGGACGCTGTTCTGGGTTTGGATGACGCCCGAGATTTACAGAGAG
GTTCAGTTCGGGTCATGGAGAATGGTAAACTGGTTCGAAGAAGACCAGCG
CCTACTCCTATTTATCTCAATGAAGAGACGATGGATGTTTGCCGACGTGT
GTTCCCTTACCTTATGCCGCCTAGCGAAGCCGCCAAGAATGGACAACGAG
TAAAAAAGGACATTCCCAGACGAGTTGCCGCTTTGGACTGGAAAGTATTC
GACGAGAGCCAATACCTCACGCCGTTTTATCCTTTGAAGGATGCAGGCAT
TGAGTTCACTCCGATAAAAATGTGGCACGGGGGCGAATACGTGTGCATGG
GATATCTTATACGACTTGAAGAGACCCCGCGCTCGATGGAAAAGGTAATC
GCTTACCTCAGTGATCTCGACGCTCTTCCAACAGAATCGCTCGAATTTCT
CAAGGGATTGCCAAGAATTGATTTGCTCGTAGTTGATTTGCTTTCGGATT
CGTCAAATTTGTCGCACCTGAACCGCGACGGAGCAATAGATCTGGTTCGC
GAGTTGCGACCTTGCGAAGCAGTTGCTGTTGGCATGACATGCTCCCTTGG
GTTTCACGATGAAGTCAACGAAGAACTAGCAATGCTGCAGGAAGAAGGAA
TTAATTTTAGATTAGCCTACGACGGAGAGAGGTTCCCGTGCTAA

Coding sequence (CDS) from alignment at tig00004437_pilon:146498..147691+

>Gchil1204.t1 ID=Gchil1204.t1|Name=Gchil1204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00004437_pilon:146498..147691+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCAGACGCGACATACAAGAGTCCGCAAACAACCGTAAACATCAG
CTCAGAAAATTCCCTAGCTTTTTACGCGTCCCCGAAAGGCTCGCAAATGG
GCTTAGAGCCTTCTCAATCCTTGAACGGTGAGCCACAGCGTGAAACAGGC
CCCTTTGCTTCTCACTCGGCTTTTGTTTCATTGCCAGCTGCCACAATGAG
TGTATCGAAGTCATTTTCAGACTCACCGAATGAGTTTATCGTTTTAGGAT
CTGGCGTTTCCACTTCGATTCCAAAGATAAACTGCATAACGCGACCATCT
GAGGAAAAGCCGTGCCTGGTTTGCAGAAAAGCGTTCGAAGATCCGTTTTC
GAAAGAGCGCAGAAACAACGTATGTGCTTTGGTTCGACATTCTGGAAGAA
CGATATTAATTGATTGTGGCAAGACAATGCGTGATGCTATGATGCGCCAT
TTGCCCATCATTGGTGTTCGAGATGTAGACGCCATTGTTCTCACTCACGG
ACATGCGGACGCTGTTCTGGGTTTGGATGACGCCCGAGATTTACAGAGAG
GTTCAGTTCGGGTCATGGAGAATGGTAAACTGGTTCGAAGAAGACCAGCG
CCTACTCCTATTTATCTCAATGAAGAGACGATGGATGTTTGCCGACGTGT
GTTCCCTTACCTTATGCCGCCTAGCGAAGCCGCCAAGAATGGACAACGAG
TAAAAAAGGACATTCCCAGACGAGTTGCCGCTTTGGACTGGAAAGTATTC
GACGAGAGCCAATACCTCACGCCGTTTTATCCTTTGAAGGATGCAGGCAT
TGAGTTCACTCCGATAAAAATGTGGCACGGGGGCGAATACGTGTGCATGG
GATATCTTATACGACTTGAAGAGACCCCGCGCTCGATGGAAAAGGTAATC
GCTTACCTCAGTGATCTCGACGCTCTTCCAACAGAATCGCTCGAATTTCT
CAAGGGATTGCCAAGAATTGATTTGCTCGTAGTTGATTTGCTTTCGGATT
CGTCAAATTTGTCGCACCTGAACCGCGACGGAGCAATAGATCTGGTTCGC
GAGTTGCGACCTTGCGAAGCAGTTGCTGTTGGCATGACATGCTCCCTTGG
GTTTCACGATGAAGTCAACGAAGAACTAGCAATGCTGCAGGAAGAAGGAA
TTAATTTTAGATTAGCCTACGACGGAGAGAGGTTCCCGTGCTAA