Gchil1146.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1146.t1
Unique NameGchil1146.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:210771..212805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1487953.JMKF01000057_gene4358
Preferred nameycf45
PFAMsAAA,AAA_30,R3H
Max annot lvl1117|Cyanobacteria
Evalue7.5e-159
EggNOG OGsCOG3854@1|root,COG3854@2|Bacteria,1G0U1@1117|Cyanobacteria,1H78Y@1150|Oscillatoriales
DescriptionPFAM ATPase family associated with various cellular activities (AAA)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1146Gchil1146Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 210771..212805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1Gchil1146.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 210771..212805 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1.start1Gchil1146.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 210771..210773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1.CDS1Gchil1146.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 210771..211776 +
Gchil1146.t1.CDS2Gchil1146.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 212534..212805 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1.exon1Gchil1146.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 210771..211776 +
Gchil1146.t1.exon2Gchil1146.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 212534..212805 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1.intron1Gchil1146.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000237_pilon 211777..212533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1146.t1.stop1Gchil1146.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 212803..212805 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1146.t1 ID=Gchil1146.t1|Name=Gchil1146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MLIADDLDQLLDILPNFIRYPLQIHPQRKVLIEVVMDLGRKPEARFPRGP
EYLSKRIITWQDLDYSIKRIGHFSADNRSGIERTLHRISSIKNRQGSTIG
LTCRVGRAILGTISIIRDLLDTYPSILLLGKPGVGKTTVIREIARVLADE
MEKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVSKPELQHQVMIEAIENH
MPEVIIIDEIGTELEALAARTIAERGVQLVGTVHGNYLDSLIKNPVLSDL
IGGIQYVTLGDDEAKRRGSQKSILERKASPAFQVAIEIHDRHSWIVHESV
GHAVDQLLQGVNLWVQRRKLIPGGAILVQCEQYITRVIMSSSQSTSYIFD
KVQNIVVNQLGVDKNKVTEDAKFASLGADSLDTVELVMAIEDTFAIKIPD
EDAEKIANLSQAIEFIQNAIDKKKN*
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spliced messenger RNA

>Gchil1146.t1 ID=Gchil1146.t1|Name=Gchil1146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000237_pilon:210771..212805+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAATAGCAGATGATTTAGACCAATTATTAGATATTTTGCCTAATTT
TATTAGGTATCCTTTACAGATTCATCCTCAGAGAAAAGTATTAATTGAAG
TAGTGATGGATTTAGGCCGAAAACCAGAAGCACGTTTTCCTAGAGGACCA
GAATATCTATCTAAGAGAATTATCACTTGGCAAGATTTAGATTATTCTAT
TAAACGTATAGGACATTTTAGTGCTGACAATCGTTCTGGTATTGAAAGAA
CATTACACAGAATTAGTTCTATTAAGAACAGACAAGGCAGCACGATTGGT
TTAACTTGTAGAGTAGGTAGAGCTATTTTAGGCACTATAAGTATCATTAG
AGATTTATTAGATACATATCCTTCTATACTATTGTTAGGTAAGCCGGGTG
TTGGTAAAACTACGGTTATTAGAGAAATTGCAAGAGTATTAGCAGATGAA
ATGGAAAAGAGGGTTGTTATAATTGATACATCTAATGAAATAGCCGGTGA
TGGTGATGTACCACATCCTGCCATTGGTAGAGCTCGAAGAATGCAGGTAT
CAAAACCAGAGTTACAACATCAAGTTATGATTGAAGCTATAGAAAATCAT
ATGCCTGAAGTGATTATAATAGACGAAATAGGTACGGAATTAGAAGCCTT
AGCTGCTCGCACAATAGCTGAAAGAGGTGTTCAGTTAGTTGGTACAGTAC
ATGGTAATTATTTAGATAGTTTAATAAAAAATCCAGTTTTATCTGATTTG
ATTGGAGGTATACAATATGTTACTCTGGGAGACGACGAAGCAAAAAGGAG
AGGTTCTCAAAAAAGTATTTTAGAAAGAAAAGCATCGCCAGCATTTCAAG
TCGCTATAGAAATTCATGATCGTCATAGTTGGATTGTTCATGAATCAGTA
GGGCATGCTGTTGATCAACTATTACAAGGAGTCAATTTATGGGTTCAGAG
GCGTAAATTAATTCCTGGTGGTGCGATTTTAGTTCAATGTGAACAATATA
TAACTAGAGTTATTATGTCATCTTCTCAATCAACATCTTATATTTTCGAT
AAAGTTCAAAATATAGTTGTTAACCAGTTGGGTGTAGATAAGAATAAAGT
TACAGAAGATGCTAAATTTGCTTCTTTAGGAGCAGATTCTTTAGACACAG
TTGAGCTTGTAATGGCTATTGAAGATACATTCGCAATAAAGATACCTGAT
GAGGATGCAGAAAAAATAGCTAATTTAAGTCAGGCTATAGAATTTATTCA
AAATGCTATAGATAAGAAAAAAAATTAA
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protein sequence of Gchil1146.t1

>Gchil1146.t1 ID=Gchil1146.t1|Name=Gchil1146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MLIADDLDQLLDILPNFIRYPLQIHPQRKVLIEVVMDLGRKPEARFPRGP
EYLSKRIITWQDLDYSIKRIGHFSADNRSGIERTLHRISSIKNRQGSTIG
LTCRVGRAILGTISIIRDLLDTYPSILLLGKPGVGKTTVIREIARVLADE
MEKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVSKPELQHQVMIEAIENH
MPEVIIIDEIGTELEALAARTIAERGVQLVGTVHGNYLDSLIKNPVLSDL
IGGIQYVTLGDDEAKRRGSQKSILERKASPAFQVAIEIHDRHSWIVHESV
GHAVDQLLQGVNLWVQRRKLIPGGAILVQCEQYITRVIMSSSQSTSYIFD
KVQNIVVNQLGVDKNKVTEDAKFASLGADSLDTVELVMAIEDTFAIKIPD
EDAEKIANLSQAIEFIQNAIDKKKN*
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mRNA from alignment at tig00000237_pilon:210771..212805+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1146.t1 ID=Gchil1146.t1|Name=Gchil1146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2035bp|location=Sequence derived from alignment at tig00000237_pilon:210771..212805+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAATAGCAGATGATTTAGACCAATTATTAGATATTTTGCCTAATTT
TATTAGGTATCCTTTACAGATTCATCCTCAGAGAAAAGTATTAATTGAAG
TAGTGATGGATTTAGGCCGAAAACCAGAAGCACGTTTTCCTAGAGGACCA
GAATATCTATCTAAGAGAATTATCACTTGGCAAGATTTAGATTATTCTAT
TAAACGTATAGGACATTTTAGTGCTGACAATCGTTCTGGTATTGAAAGAA
CATTACACAGAATTAGTTCTATTAAGAACAGACAAGGCAGCACGATTGGT
TTAACTTGTAGAGTAGGTAGAGCTATTTTAGGCACTATAAGTATCATTAG
AGATTTATTAGATACATATCCTTCTATACTATTGTTAGGTAAGCCGGGTG
TTGGTAAAACTACGGTTATTAGAGAAATTGCAAGAGTATTAGCAGATGAA
ATGGAAAAGAGGGTTGTTATAATTGATACATCTAATGAAATAGCCGGTGA
TGGTGATGTACCACATCCTGCCATTGGTAGAGCTCGAAGAATGCAGGTAT
CAAAACCAGAGTTACAACATCAAGTTATGATTGAAGCTATAGAAAATCAT
ATGCCTGAAGTGATTATAATAGACGAAATAGGTACGGAATTAGAAGCCTT
AGCTGCTCGCACAATAGCTGAAAGAGGTGTTCAGTTAGTTGGTACAGTAC
ATGGTAATTATTTAGATAGTTTAATAAAAAATCCAGTTTTATCTGATTTG
ATTGGAGGTATACAATATGTTACTCTGGGAGACGACGAAGCAAAAAGGAG
AGGTTCTCAAAAAAGTATTTTAGAAAGAAAAGCATCGCCAGCATTTCAAG
TCGCTATAGAAATTCATGATCGTCATAGTTGGATTGTTCATGAATCAGTA
GGGCATGCTGTTGATCAACTATTACAAGGAGTCAATTTATGGGTTCAGAG
GCGTAAATTAATTCCTGGTGGTGCGATTTTAGTTCAATGTGAACAATATA
TAACTAGTACTTTTATTTCTAATACAAGTCGCTTTGACCCTAAAGTTAAT
ATTAAAAATTCAAAATCTAATAACACTAATATACAATCATCTTTAAACTA
TTCGCAAAAACAAAATCTTATAAAGTTGCAAGAAATATCTGCTGTACCAA
GTTTCTCTAGAAATCTTATGAAGGATATGCCTACTATACGTGTCTATCTA
TACTATATTAATAGTGAACAAGTAGAAATGATAATTAAGAATTTGCATTT
ACCTATTATTATTACAAGGGATATTGTACAATCTGATGTAATTTTATCTT
TGAGATCGGGGTTTAAGCATAATACGAAGTTAAAAGAGGTAGCAAAAATA
AGACATATAACAATATATACATTATGTAGTAGTAATTCTGCTAATATTAA
GCGCGCTTTGACTAAAATGGTCAATATCAATAAAGTATCCCATTATAATT
GGGATACTTTATGTAAAAATAGTACAGCAATAGAGTTGAAAATTTTGATA
GAAACTAGAATAGCGATAGAAAAAATAGTAAATGGTAAAAAACAGTCTGT
AGAATTACTTTCGCAAAATGTGAACTTACGCAAATTACAACATCAATTAA
TTAATTTTTATAACTTAAGATCTCGTAGTTTCGGTGAAGAACCTAATAGA
AGATTAAGAATTTTCCCCGATTAGTTCTAAGTATGTAATTTGTCATAATT
TTATTCTTGATAATTATAGATACAGGCTATTCTAATAATCGTATATGCTA
TTTATTAACTAAGGAGTTATTATGTCATCTTCTCAATCAACATCTTATAT
TTTCGATAAAGTTCAAAATATAGTTGTTAACCAGTTGGGTGTAGATAAGA
ATAAAGTTACAGAAGATGCTAAATTTGCTTCTTTAGGAGCAGATTCTTTA
GACACAGTTGAGCTTGTAATGGCTATTGAAGATACATTCGCAATAAAGAT
ACCTGATGAGGATGCAGAAAAAATAGCTAATTTAAGTCAGGCTATAGAAT
TTATTCAAAATGCTATAGATAAGAAAAAAAATTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:210771..212805+

>Gchil1146.t1 ID=Gchil1146.t1|Name=Gchil1146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000237_pilon:210771..212805+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAATAGCAGATGATTTAGACCAATTATTAGATATTTTGCCTAATTT
TATTAGGTATCCTTTACAGATTCATCCTCAGAGAAAAGTATTAATTGAAG
TAGTGATGGATTTAGGCCGAAAACCAGAAGCACGTTTTCCTAGAGGACCA
GAATATCTATCTAAGAGAATTATCACTTGGCAAGATTTAGATTATTCTAT
TAAACGTATAGGACATTTTAGTGCTGACAATCGTTCTGGTATTGAAAGAA
CATTACACAGAATTAGTTCTATTAAGAACAGACAAGGCAGCACGATTGGT
TTAACTTGTAGAGTAGGTAGAGCTATTTTAGGCACTATAAGTATCATTAG
AGATTTATTAGATACATATCCTTCTATACTATTGTTAGGTAAGCCGGGTG
TTGGTAAAACTACGGTTATTAGAGAAATTGCAAGAGTATTAGCAGATGAA
ATGGAAAAGAGGGTTGTTATAATTGATACATCTAATGAAATAGCCGGTGA
TGGTGATGTACCACATCCTGCCATTGGTAGAGCTCGAAGAATGCAGGTAT
CAAAACCAGAGTTACAACATCAAGTTATGATTGAAGCTATAGAAAATCAT
ATGCCTGAAGTGATTATAATAGACGAAATAGGTACGGAATTAGAAGCCTT
AGCTGCTCGCACAATAGCTGAAAGAGGTGTTCAGTTAGTTGGTACAGTAC
ATGGTAATTATTTAGATAGTTTAATAAAAAATCCAGTTTTATCTGATTTG
ATTGGAGGTATACAATATGTTACTCTGGGAGACGACGAAGCAAAAAGGAG
AGGTTCTCAAAAAAGTATTTTAGAAAGAAAAGCATCGCCAGCATTTCAAG
TCGCTATAGAAATTCATGATCGTCATAGTTGGATTGTTCATGAATCAGTA
GGGCATGCTGTTGATCAACTATTACAAGGAGTCAATTTATGGGTTCAGAG
GCGTAAATTAATTCCTGGTGGTGCGATTTTAGTTCAATGTGAACAATATA
TAACTAGAGTTATTATGTCATCTTCTCAATCAACATCTTATATTTTCGAT
AAAGTTCAAAATATAGTTGTTAACCAGTTGGGTGTAGATAAGAATAAAGT
TACAGAAGATGCTAAATTTGCTTCTTTAGGAGCAGATTCTTTAGACACAG
TTGAGCTTGTAATGGCTATTGAAGATACATTCGCAATAAAGATACCTGAT
GAGGATGCAGAAAAAATAGCTAATTTAAGTCAGGCTATAGAATTTATTCA
AAATGCTATAGATAAGAAAAAAAATTAA
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