Gchil1145.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1145.t1
Unique Name	Gchil1145.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:202001..203689 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35702
Preferred name	dnaK
PFAMs	HSP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
GOs	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue	3.16e-287
EggNOG OGs	COG0443@1\|root,KOG0102@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1145	Gchil1145	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 202001..203689 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1145.t1.start1	Gchil1145.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 202001..202003 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1145.t1.CDS1	Gchil1145.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 202001..203689 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1145.t1.exon1	Gchil1145.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 202001..203689 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1145.t1.stop1	Gchil1145.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 203687..203689 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1145.t1	Gchil1145.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 202001..203689 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:202001..203689+
coding sequence from alignment at tig00000237_pilon:202001..203689+

mRNA sequence

>Gchil1145.t1 ID=Gchil1145.t1|Name=Gchil1145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=563bp
MNPENTFYSVKRFIGRKKNELRDQLKQSSYNAKTDTNFNIKLECPALSKD
FAPEEISAQVLRKLVEDASTYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKNNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVEWLIHEFNNDEGINLGKDRQALQRLTE
AAEKAKMELSSLVQTDINLPFITSTNTGPKHLEKSITRAKFEYLCQDLIN
RCEIPVNNALKDAQLSSSDIDEIVLVGGSTRIPAIQQLVKQMIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIDR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKHKREQIDVKNQADALCYQSQNQINELKDKISEDEKQH
AQKLIDSLKSSIQEDDYEKIKDTQNQLQQAMMNIGKQVYSSSQQDNSKIE
DEPVIDTNSKEA*

spliced messenger RNA

>Gchil1145.t1 ID=Gchil1145.t1|Name=Gchil1145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000237_pilon:202001..203689+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCAGAAAATACATTTTATTCTGTTAAAAGATTTATTGGTCGTAA
AAAAAATGAATTACGCGATCAACTAAAGCAGTCGTCTTATAATGCAAAAA
CTGATACTAATTTTAATATTAAGTTAGAGTGTCCAGCATTAAGTAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAGGTATTACGTAAATTAGTTGAGGA
TGCGAGCACTTATCTAGGTCAACAAGTAACTCAAGCAGTTATAACTGTCC
CAGCTTATTTTAATGATTCACAACGTCAAGCTACTAAAGATGCTGGACAG
ATTGCTGGCTTGGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
TTTATCATATGGTTTAGATAAAAAAAACAATGAAACGATTTTGGTATTTG
ATCTTGGAGGTGGTACCTTTGATGTTTCTATTTTGGAAGTAGGTGATGGT
GTTTTCGAAGTTTTATCGACTTCTGGCGACACTCACTTAGGTGGTGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTAATAATGATG
AAGGCATTAATTTAGGTAAAGATAGACAAGCCCTGCAGAGATTAACAGAG
GCTGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTAGTTCAAACTGATAT
TAATTTACCTTTTATTACTTCTACTAATACCGGTCCTAAGCATTTAGAAA
AAAGTATAACTAGAGCCAAGTTTGAGTATTTATGTCAAGATTTGATCAAT
CGTTGTGAAATACCTGTTAATAATGCATTAAAAGATGCACAATTGTCATC
TAGTGATATAGATGAAATTGTTTTAGTTGGTGGCTCTACTAGAATTCCCG
CTATCCAACAGCTTGTTAAACAAATGATAGGTAAAGATCCTAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCAGGTGT
TTTAGCAGGTGAGGTGAAAGACATATTATTACTAGATGTTACACCTTTAT
CTTTAGGTGTAGAAACGTTAGGTGGAGTTATGACTAAAATAATAGACCGC
AATACAACAGTACCTACAAAAAAATCTGAAATTTTTTCAACTGCTGTTGA
TAATCAGCCTAACGTTGAGATTCATGTGTTACAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCACGAGGTGTACCACAAATAGAAGTTATATTTGATATAGATGCTAA
TGGTATACTGTCTGTTAAAGCTAAAGATAAAGGAACAGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCGAAAGAAGAAGTTGAGAAA
TTAGTTAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACATAAGCGTGA
ACAAATAGATGTTAAAAATCAAGCAGATGCTTTGTGTTATCAATCACAAA
ATCAAATTAATGAACTAAAGGATAAGATTAGTGAAGATGAAAAACAGCAT
GCTCAGAAACTAATAGATTCTTTAAAGTCATCTATTCAAGAGGATGATTA
TGAAAAGATTAAAGATACACAAAATCAATTGCAGCAAGCGATGATGAACA
TAGGCAAGCAGGTTTATAGTTCTAGTCAGCAAGATAATAGTAAAATAGAA
GATGAGCCTGTCATAGATACTAATTCTAAAGAAGCTTAA

protein sequence of Gchil1145.t1

>Gchil1145.t1 ID=Gchil1145.t1|Name=Gchil1145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=563bp
MNPENTFYSVKRFIGRKKNELRDQLKQSSYNAKTDTNFNIKLECPALSKD
FAPEEISAQVLRKLVEDASTYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKNNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVEWLIHEFNNDEGINLGKDRQALQRLTE
AAEKAKMELSSLVQTDINLPFITSTNTGPKHLEKSITRAKFEYLCQDLIN
RCEIPVNNALKDAQLSSSDIDEIVLVGGSTRIPAIQQLVKQMIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIDR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKHKREQIDVKNQADALCYQSQNQINELKDKISEDEKQH
AQKLIDSLKSSIQEDDYEKIKDTQNQLQQAMMNIGKQVYSSSQQDNSKIE
DEPVIDTNSKEA*

mRNA from alignment at tig00000237_pilon:202001..203689+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1145.t1 ID=Gchil1145.t1|Name=Gchil1145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000237_pilon:202001..203689+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCAGAAAATACATTTTATTCTGTTAAAAGATTTATTGGTCGTAA
AAAAAATGAATTACGCGATCAACTAAAGCAGTCGTCTTATAATGCAAAAA
CTGATACTAATTTTAATATTAAGTTAGAGTGTCCAGCATTAAGTAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAGGTATTACGTAAATTAGTTGAGGA
TGCGAGCACTTATCTAGGTCAACAAGTAACTCAAGCAGTTATAACTGTCC
CAGCTTATTTTAATGATTCACAACGTCAAGCTACTAAAGATGCTGGACAG
ATTGCTGGCTTGGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
TTTATCATATGGTTTAGATAAAAAAAACAATGAAACGATTTTGGTATTTG
ATCTTGGAGGTGGTACCTTTGATGTTTCTATTTTGGAAGTAGGTGATGGT
GTTTTCGAAGTTTTATCGACTTCTGGCGACACTCACTTAGGTGGTGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTAATAATGATG
AAGGCATTAATTTAGGTAAAGATAGACAAGCCCTGCAGAGATTAACAGAG
GCTGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTAGTTCAAACTGATAT
TAATTTACCTTTTATTACTTCTACTAATACCGGTCCTAAGCATTTAGAAA
AAAGTATAACTAGAGCCAAGTTTGAGTATTTATGTCAAGATTTGATCAAT
CGTTGTGAAATACCTGTTAATAATGCATTAAAAGATGCACAATTGTCATC
TAGTGATATAGATGAAATTGTTTTAGTTGGTGGCTCTACTAGAATTCCCG
CTATCCAACAGCTTGTTAAACAAATGATAGGTAAAGATCCTAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCAGGTGT
TTTAGCAGGTGAGGTGAAAGACATATTATTACTAGATGTTACACCTTTAT
CTTTAGGTGTAGAAACGTTAGGTGGAGTTATGACTAAAATAATAGACCGC
AATACAACAGTACCTACAAAAAAATCTGAAATTTTTTCAACTGCTGTTGA
TAATCAGCCTAACGTTGAGATTCATGTGTTACAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCACGAGGTGTACCACAAATAGAAGTTATATTTGATATAGATGCTAA
TGGTATACTGTCTGTTAAAGCTAAAGATAAAGGAACAGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCGAAAGAAGAAGTTGAGAAA
TTAGTTAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACATAAGCGTGA
ACAAATAGATGTTAAAAATCAAGCAGATGCTTTGTGTTATCAATCACAAA
ATCAAATTAATGAACTAAAGGATAAGATTAGTGAAGATGAAAAACAGCAT
GCTCAGAAACTAATAGATTCTTTAAAGTCATCTATTCAAGAGGATGATTA
TGAAAAGATTAAAGATACACAAAATCAATTGCAGCAAGCGATGATGAACA
TAGGCAAGCAGGTTTATAGTTCTAGTCAGCAAGATAATAGTAAAATAGAA
GATGAGCCTGTCATAGATACTAATTCTAAAGAAGCTTAA

Coding sequence (CDS) from alignment at tig00000237_pilon:202001..203689+

>Gchil1145.t1 ID=Gchil1145.t1|Name=Gchil1145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000237_pilon:202001..203689+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCAGAAAATACATTTTATTCTGTTAAAAGATTTATTGGTCGTAA
AAAAAATGAATTACGCGATCAACTAAAGCAGTCGTCTTATAATGCAAAAA
CTGATACTAATTTTAATATTAAGTTAGAGTGTCCAGCATTAAGTAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAGGTATTACGTAAATTAGTTGAGGA
TGCGAGCACTTATCTAGGTCAACAAGTAACTCAAGCAGTTATAACTGTCC
CAGCTTATTTTAATGATTCACAACGTCAAGCTACTAAAGATGCTGGACAG
ATTGCTGGCTTGGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
TTTATCATATGGTTTAGATAAAAAAAACAATGAAACGATTTTGGTATTTG
ATCTTGGAGGTGGTACCTTTGATGTTTCTATTTTGGAAGTAGGTGATGGT
GTTTTCGAAGTTTTATCGACTTCTGGCGACACTCACTTAGGTGGTGATGA
TTTTGATAGAAAAATTGTTGAATGGTTAATTCATGAGTTTAATAATGATG
AAGGCATTAATTTAGGTAAAGATAGACAAGCCCTGCAGAGATTAACAGAG
GCTGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTAGTTCAAACTGATAT
TAATTTACCTTTTATTACTTCTACTAATACCGGTCCTAAGCATTTAGAAA
AAAGTATAACTAGAGCCAAGTTTGAGTATTTATGTCAAGATTTGATCAAT
CGTTGTGAAATACCTGTTAATAATGCATTAAAAGATGCACAATTGTCATC
TAGTGATATAGATGAAATTGTTTTAGTTGGTGGCTCTACTAGAATTCCCG
CTATCCAACAGCTTGTTAAACAAATGATAGGTAAAGATCCTAATCAAAGT
GTTAATCCTGATGAAGTAGTTGCAATTGGAGCAGCTGTTCAAGCAGGTGT
TTTAGCAGGTGAGGTGAAAGACATATTATTACTAGATGTTACACCTTTAT
CTTTAGGTGTAGAAACGTTAGGTGGAGTTATGACTAAAATAATAGACCGC
AATACAACAGTACCTACAAAAAAATCTGAAATTTTTTCAACTGCTGTTGA
TAATCAGCCTAACGTTGAGATTCATGTGTTACAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTCAGATTAGATGGTATTATGCCT
GCACCACGAGGTGTACCACAAATAGAAGTTATATTTGATATAGATGCTAA
TGGTATACTGTCTGTTAAAGCTAAAGATAAAGGAACAGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCGAAAGAAGAAGTTGAGAAA
TTAGTTAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACATAAGCGTGA
ACAAATAGATGTTAAAAATCAAGCAGATGCTTTGTGTTATCAATCACAAA
ATCAAATTAATGAACTAAAGGATAAGATTAGTGAAGATGAAAAACAGCAT
GCTCAGAAACTAATAGATTCTTTAAAGTCATCTATTCAAGAGGATGATTA
TGAAAAGATTAAAGATACACAAAATCAATTGCAGCAAGCGATGATGAACA
TAGGCAAGCAGGTTTATAGTTCTAGTCAGCAAGATAATAGTAAAATAGAA
GATGAGCCTGTCATAGATACTAATTCTAAAGAAGCTTAA