Gchil1143.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1143.t1
Unique NameGchil1143.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:183513..185042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWH1
Preferred namepsbB
PFAMsPSII
Max annot lvl2836|Bacillariophyta
KEGG koko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Evalue0.0
EggNOG OGs28JG1@1|root,2QRV6@2759|Eukaryota,2XEM0@2836|Bacillariophyta
DescriptionOne of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation
COG categoryP
BRITEko00000,ko00001,ko00002,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1143Gchil1143Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 183513..185042 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1143.t1.stop1Gchil1143.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 183513..183515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1143.t1.CDS1Gchil1143.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 183513..185042 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1143.t1.exon1Gchil1143.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 183513..185042 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1143.t1.start1Gchil1143.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 185040..185042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1143.t1Gchil1143.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 183513..185042 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1143.t1 ID=Gchil1143.t1|Name=Gchil1143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDP
VLNPMWRQGMFVMPFMSRLGVTDSWGGWSITGESVSNPGLWSFEGVAITH
IVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLC
FGFGAFHATGLFGPGIWISDGYGITGKVQPIAPAWGPDGFNPFNPGGVAS
HHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAF
VTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGATPEE
AWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDGE
GRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVS
FYGGKLNGKIFNDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSPRGW
FTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEVTEQVEFGAFQKLGD
RSSKKQGAV*
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spliced messenger RNA

>Gchil1143.t1 ID=Gchil1143.t1|Name=Gchil1143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000237_pilon:183513..185042- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTACCATGGTATCGTGTACACACAGTTGTATTAAATGACCCAGG
TCGCTTAATATCCGTTCATTTAATGCATACAGCTTTAGTAGCAGGATGGG
CCGGTTCTATGGCTTTATACGAATTAGCTGTTTTTGATCCATCTGACCCA
GTTTTAAATCCAATGTGGAGACAAGGTATGTTTGTAATGCCTTTCATGTC
TAGACTCGGAGTTACAGATTCATGGGGTGGATGGAGTATTACAGGCGAAA
GTGTTTCTAATCCAGGACTATGGAGTTTTGAAGGTGTAGCCATAACACAT
ATAGTACTATCAGGAATGCTATTTTTAGCATCTATATGGCATTGGGTCTA
TTGGGATTTAGAACTATTTCGAGATCCAAGAACCGGTGAACCTGCTTTAG
ATCTACCTAAAATATTCGGTATTCATCTACTATTATCCAGTCTATTATGT
TTTGGTTTTGGCGCATTTCATGCGACAGGACTATTTGGGCCAGGAATATG
GATCTCTGATGGTTATGGAATAACAGGAAAAGTACAACCGATTGCTCCAG
CTTGGGGCCCAGATGGATTTAATCCATTTAACCCTGGTGGAGTGGCATCA
CATCATATAGCAGCAGGTACAGTAGGTATATTAGCAGGCTTATTTCATCT
TACTGTACGCCCTCCACAACGTTTATATAGAGCATTAAGAATGGGTAATA
TAGAAACTGTACTATCAAGTAGTATATCTGCTGTCTTTTTTAGTGCTTTT
GTAACATGTGGAACTATGTGGTATGGCTCTGCAACAACTCCAATAGAACT
TTTTGGGCCCACAAGATATCAGTGGGATAGTGGATATTTCCAACAAGAAA
TTGAGAGAAGAGTTGAAAATTCTTTAAATGAAGGGGCAACTCCTGAAGAG
GCATGGTCGAAAATACCAGATAAACTAGCATTTTACGATTATATAGGGAA
CAATCCTGCTAAAGGGGGACTATTTAGGGCTGGACCTATGGATAAAGGAG
ATGGAATTGCAGAAGCTTGGTTAGGCCATCCTATATTCCAAGACGGAGAG
GGAAGAGAATTAACTGTCAGAAGAATGCCTGCATTTTTTGAAACTTTTCC
TGTTATCCTTGTTGATAAAGACGGTATTATACGAGCAGACATTCCATTCA
GAAGAGCTGAATCAAAGTATAGCATAGAACAAGTCGGTGTAACAGTAAGT
TTTTATGGTGGAAAACTAAATGGAAAAATTTTTAATGATGCACCTAGTGT
AAAAAAATATGCACGTAAAGCACAGCTAGGTGAAGTATTTGAATTTGATC
GTACAACACTTGAATCAGACGGTGTATTTAGAAGTAGTCCTAGAGGATGG
TTTACATTTGGACATGCAAACTTTGCACTGATTTTTTTCTTTGGCCACTT
ATGGCATGGATCAAGAACTATATTCAGAGATGTATTTGCGGGTATAGGAG
CAGAGGTAACAGAACAAGTAGAATTTGGCGCATTTCAAAAATTAGGAGAT
AGAAGCAGTAAGAAACAAGGCGCTGTGTAA
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protein sequence of Gchil1143.t1

>Gchil1143.t1 ID=Gchil1143.t1|Name=Gchil1143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=510bp
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDP
VLNPMWRQGMFVMPFMSRLGVTDSWGGWSITGESVSNPGLWSFEGVAITH
IVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLC
FGFGAFHATGLFGPGIWISDGYGITGKVQPIAPAWGPDGFNPFNPGGVAS
HHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAF
VTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGATPEE
AWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDGE
GRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVS
FYGGKLNGKIFNDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSPRGW
FTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEVTEQVEFGAFQKLGD
RSSKKQGAV*
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mRNA from alignment at tig00000237_pilon:183513..185042-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1143.t1 ID=Gchil1143.t1|Name=Gchil1143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000237_pilon:183513..185042- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACTACCATGGTATCGTGTACACACAGTTGTATTAAATGACCCAGG
TCGCTTAATATCCGTTCATTTAATGCATACAGCTTTAGTAGCAGGATGGG
CCGGTTCTATGGCTTTATACGAATTAGCTGTTTTTGATCCATCTGACCCA
GTTTTAAATCCAATGTGGAGACAAGGTATGTTTGTAATGCCTTTCATGTC
TAGACTCGGAGTTACAGATTCATGGGGTGGATGGAGTATTACAGGCGAAA
GTGTTTCTAATCCAGGACTATGGAGTTTTGAAGGTGTAGCCATAACACAT
ATAGTACTATCAGGAATGCTATTTTTAGCATCTATATGGCATTGGGTCTA
TTGGGATTTAGAACTATTTCGAGATCCAAGAACCGGTGAACCTGCTTTAG
ATCTACCTAAAATATTCGGTATTCATCTACTATTATCCAGTCTATTATGT
TTTGGTTTTGGCGCATTTCATGCGACAGGACTATTTGGGCCAGGAATATG
GATCTCTGATGGTTATGGAATAACAGGAAAAGTACAACCGATTGCTCCAG
CTTGGGGCCCAGATGGATTTAATCCATTTAACCCTGGTGGAGTGGCATCA
CATCATATAGCAGCAGGTACAGTAGGTATATTAGCAGGCTTATTTCATCT
TACTGTACGCCCTCCACAACGTTTATATAGAGCATTAAGAATGGGTAATA
TAGAAACTGTACTATCAAGTAGTATATCTGCTGTCTTTTTTAGTGCTTTT
GTAACATGTGGAACTATGTGGTATGGCTCTGCAACAACTCCAATAGAACT
TTTTGGGCCCACAAGATATCAGTGGGATAGTGGATATTTCCAACAAGAAA
TTGAGAGAAGAGTTGAAAATTCTTTAAATGAAGGGGCAACTCCTGAAGAG
GCATGGTCGAAAATACCAGATAAACTAGCATTTTACGATTATATAGGGAA
CAATCCTGCTAAAGGGGGACTATTTAGGGCTGGACCTATGGATAAAGGAG
ATGGAATTGCAGAAGCTTGGTTAGGCCATCCTATATTCCAAGACGGAGAG
GGAAGAGAATTAACTGTCAGAAGAATGCCTGCATTTTTTGAAACTTTTCC
TGTTATCCTTGTTGATAAAGACGGTATTATACGAGCAGACATTCCATTCA
GAAGAGCTGAATCAAAGTATAGCATAGAACAAGTCGGTGTAACAGTAAGT
TTTTATGGTGGAAAACTAAATGGAAAAATTTTTAATGATGCACCTAGTGT
AAAAAAATATGCACGTAAAGCACAGCTAGGTGAAGTATTTGAATTTGATC
GTACAACACTTGAATCAGACGGTGTATTTAGAAGTAGTCCTAGAGGATGG
TTTACATTTGGACATGCAAACTTTGCACTGATTTTTTTCTTTGGCCACTT
ATGGCATGGATCAAGAACTATATTCAGAGATGTATTTGCGGGTATAGGAG
CAGAGGTAACAGAACAAGTAGAATTTGGCGCATTTCAAAAATTAGGAGAT
AGAAGCAGTAAGAAACAAGGCGCTGTGTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:183513..185042-

>Gchil1143.t1 ID=Gchil1143.t1|Name=Gchil1143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000237_pilon:183513..185042- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACTACCATGGTATCGTGTACACACAGTTGTATTAAATGACCCAGG
TCGCTTAATATCCGTTCATTTAATGCATACAGCTTTAGTAGCAGGATGGG
CCGGTTCTATGGCTTTATACGAATTAGCTGTTTTTGATCCATCTGACCCA
GTTTTAAATCCAATGTGGAGACAAGGTATGTTTGTAATGCCTTTCATGTC
TAGACTCGGAGTTACAGATTCATGGGGTGGATGGAGTATTACAGGCGAAA
GTGTTTCTAATCCAGGACTATGGAGTTTTGAAGGTGTAGCCATAACACAT
ATAGTACTATCAGGAATGCTATTTTTAGCATCTATATGGCATTGGGTCTA
TTGGGATTTAGAACTATTTCGAGATCCAAGAACCGGTGAACCTGCTTTAG
ATCTACCTAAAATATTCGGTATTCATCTACTATTATCCAGTCTATTATGT
TTTGGTTTTGGCGCATTTCATGCGACAGGACTATTTGGGCCAGGAATATG
GATCTCTGATGGTTATGGAATAACAGGAAAAGTACAACCGATTGCTCCAG
CTTGGGGCCCAGATGGATTTAATCCATTTAACCCTGGTGGAGTGGCATCA
CATCATATAGCAGCAGGTACAGTAGGTATATTAGCAGGCTTATTTCATCT
TACTGTACGCCCTCCACAACGTTTATATAGAGCATTAAGAATGGGTAATA
TAGAAACTGTACTATCAAGTAGTATATCTGCTGTCTTTTTTAGTGCTTTT
GTAACATGTGGAACTATGTGGTATGGCTCTGCAACAACTCCAATAGAACT
TTTTGGGCCCACAAGATATCAGTGGGATAGTGGATATTTCCAACAAGAAA
TTGAGAGAAGAGTTGAAAATTCTTTAAATGAAGGGGCAACTCCTGAAGAG
GCATGGTCGAAAATACCAGATAAACTAGCATTTTACGATTATATAGGGAA
CAATCCTGCTAAAGGGGGACTATTTAGGGCTGGACCTATGGATAAAGGAG
ATGGAATTGCAGAAGCTTGGTTAGGCCATCCTATATTCCAAGACGGAGAG
GGAAGAGAATTAACTGTCAGAAGAATGCCTGCATTTTTTGAAACTTTTCC
TGTTATCCTTGTTGATAAAGACGGTATTATACGAGCAGACATTCCATTCA
GAAGAGCTGAATCAAAGTATAGCATAGAACAAGTCGGTGTAACAGTAAGT
TTTTATGGTGGAAAACTAAATGGAAAAATTTTTAATGATGCACCTAGTGT
AAAAAAATATGCACGTAAAGCACAGCTAGGTGAAGTATTTGAATTTGATC
GTACAACACTTGAATCAGACGGTGTATTTAGAAGTAGTCCTAGAGGATGG
TTTACATTTGGACATGCAAACTTTGCACTGATTTTTTTCTTTGGCCACTT
ATGGCATGGATCAAGAACTATATTCAGAGATGTATTTGCGGGTATAGGAG
CAGAGGTAACAGAACAAGTAGAATTTGGCGCATTTCAAAAATTAGGAGAT
AGAAGCAGTAAGAAACAAGGCGCTGTGTAA
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