Gchil1141.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1141.t1
Unique NameGchil1141.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:176927..178717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704999.1
Preferred nameILV2
PFAMsTPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00027,RC00106,RC01192,RC02744,RC02893
KEGG koko:K01652
KEGG ReactionR00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234
Evalue7.19e-293
EggNOG OGsCOG0028@1|root,KOG4166@2759|Eukaryota
EC2.2.1.6
Descriptionacetolactate synthase activity
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1141Gchil1141Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 176927..178717 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1141.t1.stop1Gchil1141.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 176927..176929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1141.t1.CDS1Gchil1141.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 176927..178717 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1141.t1.exon1Gchil1141.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 176927..178717 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1141.t1.start1Gchil1141.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 178715..178717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1141.t1Gchil1141.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 176927..178717 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1141.t1 ID=Gchil1141.t1|Name=Gchil1141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp
MNINYSSDLKEVTGAFALMDSLIKNSVEYVFGYPGGAILPIYDELYRWEN
QGLITHILCRHEQGASHAADGYARSTGKVGVCFATSGPGATNLVSGIATA
QLDSVPLVLITGQVARSFIGTDAFQEVDIFGITLPIVKHSYVVRDSRDMS
RIVSEAFYIAQHGRPGPVLIDVPKDVGLEKFFYEPLNPSDINLLGCRPFM
KPKDNQIIKILNLLYESSQPLLYVGGGSIISGAHDIIKEFAYRFQIPICT
TLMGKGIIDENDNLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTG
KLDEFACNAKVIHIDIDPAEIGKNRVPQVAVLGDVKEIMSQILIYVDNSS
DFTFNSQQTCSWRSRISIWRDQYPLLIPKHASNLSPQEVIFYLSRIQPTA
YFTTDVGQHQMWAAQFVNVLPRHWMSSSGLGTMGYGLPAAIGVQVAYPSA
SVICISGDASFQMNLQELATIAQYELPIKIIIINNKWQGMVRQWQQAFYG
ERYSHSNMEQGAPDFVLLAQSFGILGLQLEDRYDMNKVLHRFVNHNGPCL
LDCKVREEENCYPMVAPGKSNSQMIGISKLMKSKNSSLLKLEPDSL*
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spliced messenger RNA

>Gchil1141.t1 ID=Gchil1141.t1|Name=Gchil1141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000237_pilon:176927..178717- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATAAATTATAGTTCTGATTTAAAAGAAGTTACAGGTGCTTTTGC
TCTTATGGACAGTTTAATTAAAAATAGTGTAGAATATGTCTTTGGTTATC
CTGGCGGTGCTATATTGCCCATATATGATGAACTCTATCGGTGGGAAAAT
CAAGGATTGATTACACATATTTTGTGTCGTCATGAACAAGGCGCTTCACA
TGCTGCAGATGGTTATGCAAGATCTACTGGTAAAGTTGGTGTATGTTTTG
CTACATCTGGTCCAGGAGCCACTAATCTTGTTTCTGGTATTGCTACAGCA
CAATTAGATTCTGTTCCTTTAGTTTTAATAACAGGTCAAGTTGCTAGATC
GTTTATAGGAACAGATGCTTTTCAAGAGGTAGATATTTTTGGTATTACAT
TACCTATAGTTAAACATTCTTATGTAGTTAGAGATTCTCGAGATATGTCT
AGGATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACCAGGACC
TGTTTTAATCGATGTGCCTAAAGATGTTGGTCTAGAAAAATTTTTTTATG
AACCTCTTAATCCAAGTGATATTAATCTATTAGGTTGTCGTCCATTCATG
AAGCCGAAAGATAATCAAATCATTAAAATTTTAAATCTTCTGTATGAATC
TAGTCAACCTTTACTTTATGTTGGAGGTGGTTCTATAATTTCGGGTGCTC
ACGACATAATAAAAGAGTTTGCTTATCGTTTTCAGATACCGATATGCACT
ACTTTAATGGGAAAAGGTATTATTGACGAAAATGATAATTTATGCTTAGG
TATGCTGGGTATGCATGGCACAGCTTACGCTAATTTTGCCGTTAGTGAAT
GTGATTTATTAATTGCTCTTGGTGCCAGATTTGATGATAGGGTTACAGGT
AAATTAGATGAGTTTGCATGTAATGCGAAAGTCATACATATTGATATTGA
TCCTGCTGAAATAGGTAAAAATCGTGTTCCTCAAGTTGCTGTTTTAGGTG
ATGTTAAAGAAATTATGTCACAAATTTTGATTTATGTAGACAATAGTTCT
GATTTTACTTTCAACTCTCAACAAACTTGCTCCTGGAGGAGTAGAATATC
TATTTGGAGAGATCAATATCCTTTGTTAATTCCAAAGCATGCAAGTAATT
TATCTCCTCAAGAAGTTATCTTTTATTTATCTCGTATTCAGCCTACAGCT
TATTTTACTACTGATGTTGGTCAACATCAGATGTGGGCAGCTCAATTTGT
AAATGTCTTACCAAGACATTGGATGTCTAGTTCTGGTTTAGGTACCATGG
GATATGGTCTCCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCTTCTGCG
AGTGTAATATGTATTAGTGGAGATGCTAGTTTTCAAATGAATCTTCAAGA
GCTTGCTACAATCGCTCAATATGAATTACCAATAAAAATTATTATTATCA
ATAATAAATGGCAGGGTATGGTTAGACAGTGGCAACAAGCCTTTTATGGA
GAAAGATATTCTCATTCTAATATGGAACAAGGTGCTCCTGATTTTGTTTT
ATTAGCTCAATCTTTTGGTATTTTAGGATTACAATTAGAAGATAGATATG
ATATGAATAAAGTTTTACATCGTTTTGTAAATCATAATGGTCCATGTTTA
TTAGACTGTAAAGTTAGAGAAGAAGAGAATTGTTATCCCATGGTAGCACC
TGGTAAAAGTAATTCTCAAATGATAGGTATATCTAAGTTAATGAAATCTA
AGAATTCTTCACTACTAAAATTAGAGCCAGATAGCCTTTAA
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protein sequence of Gchil1141.t1

>Gchil1141.t1 ID=Gchil1141.t1|Name=Gchil1141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=597bp
MNINYSSDLKEVTGAFALMDSLIKNSVEYVFGYPGGAILPIYDELYRWEN
QGLITHILCRHEQGASHAADGYARSTGKVGVCFATSGPGATNLVSGIATA
QLDSVPLVLITGQVARSFIGTDAFQEVDIFGITLPIVKHSYVVRDSRDMS
RIVSEAFYIAQHGRPGPVLIDVPKDVGLEKFFYEPLNPSDINLLGCRPFM
KPKDNQIIKILNLLYESSQPLLYVGGGSIISGAHDIIKEFAYRFQIPICT
TLMGKGIIDENDNLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTG
KLDEFACNAKVIHIDIDPAEIGKNRVPQVAVLGDVKEIMSQILIYVDNSS
DFTFNSQQTCSWRSRISIWRDQYPLLIPKHASNLSPQEVIFYLSRIQPTA
YFTTDVGQHQMWAAQFVNVLPRHWMSSSGLGTMGYGLPAAIGVQVAYPSA
SVICISGDASFQMNLQELATIAQYELPIKIIIINNKWQGMVRQWQQAFYG
ERYSHSNMEQGAPDFVLLAQSFGILGLQLEDRYDMNKVLHRFVNHNGPCL
LDCKVREEENCYPMVAPGKSNSQMIGISKLMKSKNSSLLKLEPDSL*
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mRNA from alignment at tig00000237_pilon:176927..178717-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1141.t1 ID=Gchil1141.t1|Name=Gchil1141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at tig00000237_pilon:176927..178717- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATAAATTATAGTTCTGATTTAAAAGAAGTTACAGGTGCTTTTGC
TCTTATGGACAGTTTAATTAAAAATAGTGTAGAATATGTCTTTGGTTATC
CTGGCGGTGCTATATTGCCCATATATGATGAACTCTATCGGTGGGAAAAT
CAAGGATTGATTACACATATTTTGTGTCGTCATGAACAAGGCGCTTCACA
TGCTGCAGATGGTTATGCAAGATCTACTGGTAAAGTTGGTGTATGTTTTG
CTACATCTGGTCCAGGAGCCACTAATCTTGTTTCTGGTATTGCTACAGCA
CAATTAGATTCTGTTCCTTTAGTTTTAATAACAGGTCAAGTTGCTAGATC
GTTTATAGGAACAGATGCTTTTCAAGAGGTAGATATTTTTGGTATTACAT
TACCTATAGTTAAACATTCTTATGTAGTTAGAGATTCTCGAGATATGTCT
AGGATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACCAGGACC
TGTTTTAATCGATGTGCCTAAAGATGTTGGTCTAGAAAAATTTTTTTATG
AACCTCTTAATCCAAGTGATATTAATCTATTAGGTTGTCGTCCATTCATG
AAGCCGAAAGATAATCAAATCATTAAAATTTTAAATCTTCTGTATGAATC
TAGTCAACCTTTACTTTATGTTGGAGGTGGTTCTATAATTTCGGGTGCTC
ACGACATAATAAAAGAGTTTGCTTATCGTTTTCAGATACCGATATGCACT
ACTTTAATGGGAAAAGGTATTATTGACGAAAATGATAATTTATGCTTAGG
TATGCTGGGTATGCATGGCACAGCTTACGCTAATTTTGCCGTTAGTGAAT
GTGATTTATTAATTGCTCTTGGTGCCAGATTTGATGATAGGGTTACAGGT
AAATTAGATGAGTTTGCATGTAATGCGAAAGTCATACATATTGATATTGA
TCCTGCTGAAATAGGTAAAAATCGTGTTCCTCAAGTTGCTGTTTTAGGTG
ATGTTAAAGAAATTATGTCACAAATTTTGATTTATGTAGACAATAGTTCT
GATTTTACTTTCAACTCTCAACAAACTTGCTCCTGGAGGAGTAGAATATC
TATTTGGAGAGATCAATATCCTTTGTTAATTCCAAAGCATGCAAGTAATT
TATCTCCTCAAGAAGTTATCTTTTATTTATCTCGTATTCAGCCTACAGCT
TATTTTACTACTGATGTTGGTCAACATCAGATGTGGGCAGCTCAATTTGT
AAATGTCTTACCAAGACATTGGATGTCTAGTTCTGGTTTAGGTACCATGG
GATATGGTCTCCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCTTCTGCG
AGTGTAATATGTATTAGTGGAGATGCTAGTTTTCAAATGAATCTTCAAGA
GCTTGCTACAATCGCTCAATATGAATTACCAATAAAAATTATTATTATCA
ATAATAAATGGCAGGGTATGGTTAGACAGTGGCAACAAGCCTTTTATGGA
GAAAGATATTCTCATTCTAATATGGAACAAGGTGCTCCTGATTTTGTTTT
ATTAGCTCAATCTTTTGGTATTTTAGGATTACAATTAGAAGATAGATATG
ATATGAATAAAGTTTTACATCGTTTTGTAAATCATAATGGTCCATGTTTA
TTAGACTGTAAAGTTAGAGAAGAAGAGAATTGTTATCCCATGGTAGCACC
TGGTAAAAGTAATTCTCAAATGATAGGTATATCTAAGTTAATGAAATCTA
AGAATTCTTCACTACTAAAATTAGAGCCAGATAGCCTTTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:176927..178717-

>Gchil1141.t1 ID=Gchil1141.t1|Name=Gchil1141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1791bp|location=Sequence derived from alignment at tig00000237_pilon:176927..178717- (Gracilaria chilensis NLEC103_M9 male)
ATGAATATAAATTATAGTTCTGATTTAAAAGAAGTTACAGGTGCTTTTGC
TCTTATGGACAGTTTAATTAAAAATAGTGTAGAATATGTCTTTGGTTATC
CTGGCGGTGCTATATTGCCCATATATGATGAACTCTATCGGTGGGAAAAT
CAAGGATTGATTACACATATTTTGTGTCGTCATGAACAAGGCGCTTCACA
TGCTGCAGATGGTTATGCAAGATCTACTGGTAAAGTTGGTGTATGTTTTG
CTACATCTGGTCCAGGAGCCACTAATCTTGTTTCTGGTATTGCTACAGCA
CAATTAGATTCTGTTCCTTTAGTTTTAATAACAGGTCAAGTTGCTAGATC
GTTTATAGGAACAGATGCTTTTCAAGAGGTAGATATTTTTGGTATTACAT
TACCTATAGTTAAACATTCTTATGTAGTTAGAGATTCTCGAGATATGTCT
AGGATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACCAGGACC
TGTTTTAATCGATGTGCCTAAAGATGTTGGTCTAGAAAAATTTTTTTATG
AACCTCTTAATCCAAGTGATATTAATCTATTAGGTTGTCGTCCATTCATG
AAGCCGAAAGATAATCAAATCATTAAAATTTTAAATCTTCTGTATGAATC
TAGTCAACCTTTACTTTATGTTGGAGGTGGTTCTATAATTTCGGGTGCTC
ACGACATAATAAAAGAGTTTGCTTATCGTTTTCAGATACCGATATGCACT
ACTTTAATGGGAAAAGGTATTATTGACGAAAATGATAATTTATGCTTAGG
TATGCTGGGTATGCATGGCACAGCTTACGCTAATTTTGCCGTTAGTGAAT
GTGATTTATTAATTGCTCTTGGTGCCAGATTTGATGATAGGGTTACAGGT
AAATTAGATGAGTTTGCATGTAATGCGAAAGTCATACATATTGATATTGA
TCCTGCTGAAATAGGTAAAAATCGTGTTCCTCAAGTTGCTGTTTTAGGTG
ATGTTAAAGAAATTATGTCACAAATTTTGATTTATGTAGACAATAGTTCT
GATTTTACTTTCAACTCTCAACAAACTTGCTCCTGGAGGAGTAGAATATC
TATTTGGAGAGATCAATATCCTTTGTTAATTCCAAAGCATGCAAGTAATT
TATCTCCTCAAGAAGTTATCTTTTATTTATCTCGTATTCAGCCTACAGCT
TATTTTACTACTGATGTTGGTCAACATCAGATGTGGGCAGCTCAATTTGT
AAATGTCTTACCAAGACATTGGATGTCTAGTTCTGGTTTAGGTACCATGG
GATATGGTCTCCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCTTCTGCG
AGTGTAATATGTATTAGTGGAGATGCTAGTTTTCAAATGAATCTTCAAGA
GCTTGCTACAATCGCTCAATATGAATTACCAATAAAAATTATTATTATCA
ATAATAAATGGCAGGGTATGGTTAGACAGTGGCAACAAGCCTTTTATGGA
GAAAGATATTCTCATTCTAATATGGAACAAGGTGCTCCTGATTTTGTTTT
ATTAGCTCAATCTTTTGGTATTTTAGGATTACAATTAGAAGATAGATATG
ATATGAATAAAGTTTTACATCGTTTTGTAAATCATAATGGTCCATGTTTA
TTAGACTGTAAAGTTAGAGAAGAAGAGAATTGTTATCCCATGGTAGCACC
TGGTAAAAGTAATTCTCAAATGATAGGTATATCTAAGTTAATGAAATCTA
AGAATTCTTCACTACTAAAATTAGAGCCAGATAGCCTTTAA
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