Gchil1140.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1140.t1
Unique Name	Gchil1140.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	823

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:171167..173635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173025.GEI7407_0504
Preferred name	clpC
PFAMs	AAA,AAA_2,ClpB_D2-small,Clp_N,UVR
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03696
KEGG Pathway	ko01100,map01100
Evalue	0.0
EggNOG OGs	COG0542@1\|root,COG0542@2\|Bacteria,1G0ZH@1117\|Cyanobacteria,1H8UC@1150\|Oscillatoriales
Description	Belongs to the ClpA ClpB family
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1140	Gchil1140	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 171167..173635 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1140.t1.start1	Gchil1140.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 171167..171169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1140.t1.CDS1	Gchil1140.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 171167..173635 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1140.t1.exon1	Gchil1140.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 171167..173635 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1140.t1.stop1	Gchil1140.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 173633..173635 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1140.t1	Gchil1140.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 171167..173635 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:171167..173635+
coding sequence from alignment at tig00000237_pilon:171167..173635+

mRNA sequence

>Gchil1140.t1 ID=Gchil1140.t1|Name=Gchil1140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=823bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDTTEANT
NGNSNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV
AGTKYRGEFEERLKRIMDEIKSANNIVLVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME
IKAQIAAIAQSKKNEPNIQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEETLHNRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGGLGFELGESQTESQYNRIRSLVNEEL
KQYFRPEFLNRLDEIIVFRQLSKDEVREIAEIMLQEVFERIKQQEIQLEV
TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV
VDVTDEGKVTVLLGEQLEIVKP*

spliced messenger RNA

>Gchil1140.t1 ID=Gchil1140.t1|Name=Gchil1140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at tig00000237_pilon:171167..173635+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAACGATTTACAGAAAAAGCAATCAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGATTAGGCCACAACTTTGTGGGTACAGAACAAATTT
TGTTAGGTTTAATAGGTGAAGGCACAGGAATTGCTGCACAAGTGTTGAAA
TCTATGAATGTAAATTTAAAAGACGCACGCATAGAAGTAGAAAAAATTAT
TGGAAGAGGGTCTGGGTTTGTTGCAGTGGAAATACCTTTTACACCAAGAG
CAAAAAGAGTTTTAGAACTTTCTTTAGAGGAAGCAAGGCAACTTGGACAC
AACTATATAGGTACAGAACATTTATTAATGGGTCTAGTACGTGAAGGAGA
AGGTGTAGCTGCAAGAGTACTGGAAAATTTAGCTGTCAATGTAGCATCTA
TAAGAACAGAAGTTATACAAATGTTGGGCGACACCACTGAAGCTAATACT
AATGGAAATAGTAATACACAAACAAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTAACAGAATTAGCTATAGAAGGAATCCTAGATCCTG
TAGTCGGAAGACAAAAAGAAATTGAAAGAGTAATACAAATTCTAGGAAGA
AGAACAAAAAATAATCCCGTATTAATTGGAGAGCCAGGAGTAGGCAAAAC
TGCTATAGCAGAAGGCTTAGCGCAAAGAATTGCAAATAAAGATATACCTT
CTATATTAGAAGATAAACTCGTTGTTACACTAGATGTAGGTTTATTAGTA
GCTGGTACAAAATATAGAGGAGAATTTGAAGAAAGACTTAAAAGAATCAT
GGATGAGATCAAGTCAGCTAACAATATTGTATTAGTTATAGATGAAGTAC
ATACACTAATTGGAGCTGGAGCAGCTGAAGGAGCTATAGATGCAGCTAAC
CTATTAAAACCAGCATTAGCCAGAGGAGAATTGCAATGTATAGGTGCAAC
AACACTAGAAGAATATCGTAAACATATAGAGAAAGATGCCGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGTGTAGAAGAAACTATC
GAAATTTTATTTGGCTTGAGAGATAGATATGAAAAACACCATCAATTAAA
AATGTCAGATGAAGCTTTAGCGGCTGCTGCTAAATATGCTAATCAATATA
TTTCTGACCGCTTCTTACCTGACAAGGCAATTGACTTAATTGATGAAGCT
GGCTCAAGGGTTAGATTACTGAACTCTCAACTACCTCCAGCAGCAAGAGA
ATTAGATAAAGAGCTTAGGAATGTACTAAAAACAAAAGATGAAGCAATAA
GAGCGCAAAAATACGAAAAAGCAGAACAATATCGAACAAGGGAAATGGAG
ATCAAGGCTCAAATTGCTGCTATTGCACAAAGTAAAAAAAATGAACCAAA
CATACAGATTGAAGACCCTGTAGTTACAGAAGATGATATTGCAGAAATAG
TTGCATTTTGGACTGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCA
GAAAAATTAATGCATATGGAAGAAACATTGCATAATCGAATTATCGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCGATTAGAAGAGCAAGAGTTG
GATTAAAGAATCCAAATCGACCTATTGCAAGCTTTATTTTTTCTGGACCT
ACAGGGGTTGGTAAAACAGAATTAACAAAAGCATTAGCTTCTTATTTCTT
TGGTTCACAAGAAGCAATGGTTAGACTAGATATGTCTGAATACATGGAAA
GACATACTGTATCTAAGTTAATAGGTTCACCACCTGGCTATGTGGGCTAT
AGTGAAGGGGGATATTTAACAGAAGCAGTTAGAAAACGCCCTTATACTGT
GATTTTATTCGATGAGATTGAAAAAGCACATCCAGATATCTTTAATCTTT
TACTACAAATCTTAGAAGATGGCAGGCTTACTGATGCTAAAGGGAGAACT
ATAGATTTTAAGAATACTCTCTTAATCATGACATCTAATATAGGGTCAAA
AGTGATAGAAAAAGGAGGAGGTGGCTTAGGTTTTGAGCTAGGAGAATCAC
AAACGGAATCACAGTATAACCGTATTAGATCATTAGTTAATGAAGAATTA
AAACAATATTTTCGTCCTGAGTTTTTAAATAGACTAGATGAAATTATTGT
CTTTAGACAACTATCTAAAGATGAAGTACGCGAGATAGCAGAGATTATGC
TGCAAGAAGTATTTGAACGTATTAAACAACAAGAAATTCAATTAGAAGTA
ACTGAGAGATTTAAAAACCGATTAGTCGATGAAGGATATAATCCTAGTTA
TGGTGCAAGACCACTGCGTAGAGCCGTAATGAGATTATTAGAAGATAGTT
TAGCAGAAGAAGTGTTATCAGGTAAAATCAAAGCTGGTGATAGCGCTGTT
GTCGACGTAACGGATGAAGGAAAAGTAACTGTATTATTAGGTGAACAGCT
AGAGATTGTGAAACCTTAA

protein sequence of Gchil1140.t1

>Gchil1140.t1 ID=Gchil1140.t1|Name=Gchil1140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=823bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDTTEANT
NGNSNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV
AGTKYRGEFEERLKRIMDEIKSANNIVLVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME
IKAQIAAIAQSKKNEPNIQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEETLHNRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGGLGFELGESQTESQYNRIRSLVNEEL
KQYFRPEFLNRLDEIIVFRQLSKDEVREIAEIMLQEVFERIKQQEIQLEV
TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV
VDVTDEGKVTVLLGEQLEIVKP*

mRNA from alignment at tig00000237_pilon:171167..173635+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1140.t1 ID=Gchil1140.t1|Name=Gchil1140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at tig00000237_pilon:171167..173635+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAACGATTTACAGAAAAAGCAATCAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGATTAGGCCACAACTTTGTGGGTACAGAACAAATTT
TGTTAGGTTTAATAGGTGAAGGCACAGGAATTGCTGCACAAGTGTTGAAA
TCTATGAATGTAAATTTAAAAGACGCACGCATAGAAGTAGAAAAAATTAT
TGGAAGAGGGTCTGGGTTTGTTGCAGTGGAAATACCTTTTACACCAAGAG
CAAAAAGAGTTTTAGAACTTTCTTTAGAGGAAGCAAGGCAACTTGGACAC
AACTATATAGGTACAGAACATTTATTAATGGGTCTAGTACGTGAAGGAGA
AGGTGTAGCTGCAAGAGTACTGGAAAATTTAGCTGTCAATGTAGCATCTA
TAAGAACAGAAGTTATACAAATGTTGGGCGACACCACTGAAGCTAATACT
AATGGAAATAGTAATACACAAACAAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTAACAGAATTAGCTATAGAAGGAATCCTAGATCCTG
TAGTCGGAAGACAAAAAGAAATTGAAAGAGTAATACAAATTCTAGGAAGA
AGAACAAAAAATAATCCCGTATTAATTGGAGAGCCAGGAGTAGGCAAAAC
TGCTATAGCAGAAGGCTTAGCGCAAAGAATTGCAAATAAAGATATACCTT
CTATATTAGAAGATAAACTCGTTGTTACACTAGATGTAGGTTTATTAGTA
GCTGGTACAAAATATAGAGGAGAATTTGAAGAAAGACTTAAAAGAATCAT
GGATGAGATCAAGTCAGCTAACAATATTGTATTAGTTATAGATGAAGTAC
ATACACTAATTGGAGCTGGAGCAGCTGAAGGAGCTATAGATGCAGCTAAC
CTATTAAAACCAGCATTAGCCAGAGGAGAATTGCAATGTATAGGTGCAAC
AACACTAGAAGAATATCGTAAACATATAGAGAAAGATGCCGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGTGTAGAAGAAACTATC
GAAATTTTATTTGGCTTGAGAGATAGATATGAAAAACACCATCAATTAAA
AATGTCAGATGAAGCTTTAGCGGCTGCTGCTAAATATGCTAATCAATATA
TTTCTGACCGCTTCTTACCTGACAAGGCAATTGACTTAATTGATGAAGCT
GGCTCAAGGGTTAGATTACTGAACTCTCAACTACCTCCAGCAGCAAGAGA
ATTAGATAAAGAGCTTAGGAATGTACTAAAAACAAAAGATGAAGCAATAA
GAGCGCAAAAATACGAAAAAGCAGAACAATATCGAACAAGGGAAATGGAG
ATCAAGGCTCAAATTGCTGCTATTGCACAAAGTAAAAAAAATGAACCAAA
CATACAGATTGAAGACCCTGTAGTTACAGAAGATGATATTGCAGAAATAG
TTGCATTTTGGACTGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCA
GAAAAATTAATGCATATGGAAGAAACATTGCATAATCGAATTATCGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCGATTAGAAGAGCAAGAGTTG
GATTAAAGAATCCAAATCGACCTATTGCAAGCTTTATTTTTTCTGGACCT
ACAGGGGTTGGTAAAACAGAATTAACAAAAGCATTAGCTTCTTATTTCTT
TGGTTCACAAGAAGCAATGGTTAGACTAGATATGTCTGAATACATGGAAA
GACATACTGTATCTAAGTTAATAGGTTCACCACCTGGCTATGTGGGCTAT
AGTGAAGGGGGATATTTAACAGAAGCAGTTAGAAAACGCCCTTATACTGT
GATTTTATTCGATGAGATTGAAAAAGCACATCCAGATATCTTTAATCTTT
TACTACAAATCTTAGAAGATGGCAGGCTTACTGATGCTAAAGGGAGAACT
ATAGATTTTAAGAATACTCTCTTAATCATGACATCTAATATAGGGTCAAA
AGTGATAGAAAAAGGAGGAGGTGGCTTAGGTTTTGAGCTAGGAGAATCAC
AAACGGAATCACAGTATAACCGTATTAGATCATTAGTTAATGAAGAATTA
AAACAATATTTTCGTCCTGAGTTTTTAAATAGACTAGATGAAATTATTGT
CTTTAGACAACTATCTAAAGATGAAGTACGCGAGATAGCAGAGATTATGC
TGCAAGAAGTATTTGAACGTATTAAACAACAAGAAATTCAATTAGAAGTA
ACTGAGAGATTTAAAAACCGATTAGTCGATGAAGGATATAATCCTAGTTA
TGGTGCAAGACCACTGCGTAGAGCCGTAATGAGATTATTAGAAGATAGTT
TAGCAGAAGAAGTGTTATCAGGTAAAATCAAAGCTGGTGATAGCGCTGTT
GTCGACGTAACGGATGAAGGAAAAGTAACTGTATTATTAGGTGAACAGCT
AGAGATTGTGAAACCTTAA

Coding sequence (CDS) from alignment at tig00000237_pilon:171167..173635+

>Gchil1140.t1 ID=Gchil1140.t1|Name=Gchil1140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2469bp|location=Sequence derived from alignment at tig00000237_pilon:171167..173635+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAACGATTTACAGAAAAAGCAATCAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGATTAGGCCACAACTTTGTGGGTACAGAACAAATTT
TGTTAGGTTTAATAGGTGAAGGCACAGGAATTGCTGCACAAGTGTTGAAA
TCTATGAATGTAAATTTAAAAGACGCACGCATAGAAGTAGAAAAAATTAT
TGGAAGAGGGTCTGGGTTTGTTGCAGTGGAAATACCTTTTACACCAAGAG
CAAAAAGAGTTTTAGAACTTTCTTTAGAGGAAGCAAGGCAACTTGGACAC
AACTATATAGGTACAGAACATTTATTAATGGGTCTAGTACGTGAAGGAGA
AGGTGTAGCTGCAAGAGTACTGGAAAATTTAGCTGTCAATGTAGCATCTA
TAAGAACAGAAGTTATACAAATGTTGGGCGACACCACTGAAGCTAATACT
AATGGAAATAGTAATACACAAACAAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTAACAGAATTAGCTATAGAAGGAATCCTAGATCCTG
TAGTCGGAAGACAAAAAGAAATTGAAAGAGTAATACAAATTCTAGGAAGA
AGAACAAAAAATAATCCCGTATTAATTGGAGAGCCAGGAGTAGGCAAAAC
TGCTATAGCAGAAGGCTTAGCGCAAAGAATTGCAAATAAAGATATACCTT
CTATATTAGAAGATAAACTCGTTGTTACACTAGATGTAGGTTTATTAGTA
GCTGGTACAAAATATAGAGGAGAATTTGAAGAAAGACTTAAAAGAATCAT
GGATGAGATCAAGTCAGCTAACAATATTGTATTAGTTATAGATGAAGTAC
ATACACTAATTGGAGCTGGAGCAGCTGAAGGAGCTATAGATGCAGCTAAC
CTATTAAAACCAGCATTAGCCAGAGGAGAATTGCAATGTATAGGTGCAAC
AACACTAGAAGAATATCGTAAACATATAGAGAAAGATGCCGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGTGTAGAAGAAACTATC
GAAATTTTATTTGGCTTGAGAGATAGATATGAAAAACACCATCAATTAAA
AATGTCAGATGAAGCTTTAGCGGCTGCTGCTAAATATGCTAATCAATATA
TTTCTGACCGCTTCTTACCTGACAAGGCAATTGACTTAATTGATGAAGCT
GGCTCAAGGGTTAGATTACTGAACTCTCAACTACCTCCAGCAGCAAGAGA
ATTAGATAAAGAGCTTAGGAATGTACTAAAAACAAAAGATGAAGCAATAA
GAGCGCAAAAATACGAAAAAGCAGAACAATATCGAACAAGGGAAATGGAG
ATCAAGGCTCAAATTGCTGCTATTGCACAAAGTAAAAAAAATGAACCAAA
CATACAGATTGAAGACCCTGTAGTTACAGAAGATGATATTGCAGAAATAG
TTGCATTTTGGACTGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCA
GAAAAATTAATGCATATGGAAGAAACATTGCATAATCGAATTATCGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCGATTAGAAGAGCAAGAGTTG
GATTAAAGAATCCAAATCGACCTATTGCAAGCTTTATTTTTTCTGGACCT
ACAGGGGTTGGTAAAACAGAATTAACAAAAGCATTAGCTTCTTATTTCTT
TGGTTCACAAGAAGCAATGGTTAGACTAGATATGTCTGAATACATGGAAA
GACATACTGTATCTAAGTTAATAGGTTCACCACCTGGCTATGTGGGCTAT
AGTGAAGGGGGATATTTAACAGAAGCAGTTAGAAAACGCCCTTATACTGT
GATTTTATTCGATGAGATTGAAAAAGCACATCCAGATATCTTTAATCTTT
TACTACAAATCTTAGAAGATGGCAGGCTTACTGATGCTAAAGGGAGAACT
ATAGATTTTAAGAATACTCTCTTAATCATGACATCTAATATAGGGTCAAA
AGTGATAGAAAAAGGAGGAGGTGGCTTAGGTTTTGAGCTAGGAGAATCAC
AAACGGAATCACAGTATAACCGTATTAGATCATTAGTTAATGAAGAATTA
AAACAATATTTTCGTCCTGAGTTTTTAAATAGACTAGATGAAATTATTGT
CTTTAGACAACTATCTAAAGATGAAGTACGCGAGATAGCAGAGATTATGC
TGCAAGAAGTATTTGAACGTATTAAACAACAAGAAATTCAATTAGAAGTA
ACTGAGAGATTTAAAAACCGATTAGTCGATGAAGGATATAATCCTAGTTA
TGGTGCAAGACCACTGCGTAGAGCCGTAATGAGATTATTAGAAGATAGTT
TAGCAGAAGAAGTGTTATCAGGTAAAATCAAAGCTGGTGATAGCGCTGTT
GTCGACGTAACGGATGAAGGAAAAGTAACTGTATTATTAGGTGAACAGCT
AGAGATTGTGAAACCTTAA