Gchil1137.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1137.t1
Unique Name	Gchil1137.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	529

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:157102..158688 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35604
Preferred name	groL
PFAMs	Cpn60_TCP1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04077
KEGG Pathway	ko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	4.62e-268
EggNOG OGs	COG0459@1\|root,KOG0356@2759\|Eukaryota
Description	protein refolding
COG category	O
BRITE	ko00000,ko00001,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1137	Gchil1137	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 157102..158688 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1137.t1.stop1	Gchil1137.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 157102..157104 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1137.t1.CDS1	Gchil1137.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 157102..158688 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1137.t1.exon1	Gchil1137.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 157102..158688 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1137.t1.start1	Gchil1137.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 158686..158688 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1137.t1	Gchil1137.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 157102..158688 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:157102..158688-
coding sequence from alignment at tig00000237_pilon:157102..158688-

mRNA sequence

>Gchil1137.t1 ID=Gchil1137.t1|Name=Gchil1137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=529bp
MSKKILYQDNARKALEKGMDILVEAVAITLGPKGRNVVLERKFGAPQIIN
DGVTIAKEIELKDLTENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVK
QGLKNVAAGANPIILKKGIQKAVKFVVAKIAEYSKPICNMQDVTHIGSIS
SGNDFEVGTMIANAIQQVGKEGIISLEEGQSTTIELDIKEGMKFDKGFIS
PYFVTDTSRMEVIQDNPYILITDKKITLIQQELLPILEKVTKTGRPLLII
AEDIEKEALATIIVNKLRGIINVVAVRAPGFGDRRKLLLEDIAILTSGVV
ITQDMGLSLDNINLDQLGSARRVQITKDSTTIVADAQKDLIQARCDQIRR
QLEAATNCYEKDKLHERLAKLSGGVAVVKVGAATETEMRDKKLRLEDAIN
ATKAAIEEGIVPGGGSTFVHLSKVLRVWAVDNLIGEELVGALIIVDSLLY
PLKRIVENAGSNGAIIVEKIKNSNFSTGYNADIGQIVDMYEEGIIDPAKV
TRSALQNAASIASMILTTECLIAEQVDS*

spliced messenger RNA

>Gchil1137.t1 ID=Gchil1137.t1|Name=Gchil1137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000237_pilon:157102..158688- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAAAAAAATCTTATATCAAGATAATGCTCGTAAAGCTTTGGAAAA
AGGTATGGATATTCTAGTTGAGGCGGTTGCTATAACTCTCGGTCCGAAAG
GCAGAAATGTTGTATTAGAAAGAAAATTTGGTGCTCCTCAGATTATTAAT
GATGGTGTAACTATTGCTAAAGAAATAGAACTGAAGGATTTGACAGAAAA
TACTGGTGTTGCATTGATTAGGCAGGCAGCGTCAAAAACTAATGATGTGG
CTGGCGATGGTACAACTACAGCAACTGTATTGGCTCATGCCATAGTGAAA
CAGGGTCTTAAAAATGTTGCAGCTGGAGCTAATCCTATTATTTTAAAGAA
AGGCATACAAAAAGCAGTTAAATTCGTTGTTGCGAAGATTGCAGAATATT
CTAAACCTATTTGTAATATGCAAGATGTTACTCATATTGGTTCTATCTCT
TCCGGTAATGATTTTGAAGTTGGAACGATGATTGCTAATGCCATTCAGCA
AGTAGGAAAAGAAGGTATAATTTCTCTAGAAGAAGGTCAGTCTACAACTA
TAGAATTAGATATTAAAGAAGGGATGAAATTTGATAAAGGTTTTATCTCT
CCATACTTTGTTACCGATACATCTCGTATGGAGGTAATACAAGATAATCC
ATATATATTAATAACAGATAAAAAAATTACACTTATTCAGCAAGAGTTAT
TGCCTATACTCGAAAAAGTTACTAAAACGGGTCGTCCATTACTTATCATA
GCTGAAGATATAGAAAAAGAGGCTTTAGCGACTATTATAGTAAATAAACT
AAGAGGTATTATTAATGTAGTTGCTGTTAGAGCACCTGGTTTTGGAGATA
GAAGAAAATTATTATTAGAAGATATAGCAATTCTAACTTCAGGGGTAGTT
ATTACGCAAGATATGGGCTTGAGTTTAGATAATATAAATTTAGATCAACT
AGGCTCTGCTAGAAGAGTTCAAATTACGAAAGATTCTACAACAATTGTTG
CAGATGCACAAAAAGATCTTATTCAAGCACGTTGTGACCAAATCAGGAGA
CAATTAGAAGCTGCTACTAATTGTTATGAAAAAGATAAATTGCATGAGAG
GCTTGCGAAACTATCTGGAGGTGTTGCTGTAGTTAAAGTAGGTGCTGCAA
CTGAAACAGAAATGAGAGACAAAAAACTTCGCTTAGAAGACGCTATTAAC
GCAACTAAAGCAGCTATTGAAGAAGGTATAGTACCGGGTGGTGGTTCTAC
ATTTGTTCACTTATCTAAAGTTTTACGAGTTTGGGCTGTAGATAATTTAA
TTGGAGAAGAGTTAGTGGGTGCATTGATCATAGTTGATTCTCTATTATAT
CCTCTCAAGAGAATAGTCGAAAATGCGGGTAGTAATGGAGCGATCATTGT
AGAGAAAATTAAAAATAGTAATTTTTCTACGGGTTATAATGCTGACATTG
GTCAAATAGTCGATATGTATGAAGAAGGCATAATTGATCCGGCTAAAGTC
ACGCGTTCTGCTTTACAAAACGCAGCCTCAATAGCTTCTATGATTTTGAC
TACAGAATGTTTGATAGCAGAACAAGTAGATAGTTAA

protein sequence of Gchil1137.t1

>Gchil1137.t1 ID=Gchil1137.t1|Name=Gchil1137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=529bp
MSKKILYQDNARKALEKGMDILVEAVAITLGPKGRNVVLERKFGAPQIIN
DGVTIAKEIELKDLTENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVK
QGLKNVAAGANPIILKKGIQKAVKFVVAKIAEYSKPICNMQDVTHIGSIS
SGNDFEVGTMIANAIQQVGKEGIISLEEGQSTTIELDIKEGMKFDKGFIS
PYFVTDTSRMEVIQDNPYILITDKKITLIQQELLPILEKVTKTGRPLLII
AEDIEKEALATIIVNKLRGIINVVAVRAPGFGDRRKLLLEDIAILTSGVV
ITQDMGLSLDNINLDQLGSARRVQITKDSTTIVADAQKDLIQARCDQIRR
QLEAATNCYEKDKLHERLAKLSGGVAVVKVGAATETEMRDKKLRLEDAIN
ATKAAIEEGIVPGGGSTFVHLSKVLRVWAVDNLIGEELVGALIIVDSLLY
PLKRIVENAGSNGAIIVEKIKNSNFSTGYNADIGQIVDMYEEGIIDPAKV
TRSALQNAASIASMILTTECLIAEQVDS*

mRNA from alignment at tig00000237_pilon:157102..158688-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1137.t1 ID=Gchil1137.t1|Name=Gchil1137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at tig00000237_pilon:157102..158688- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAAAAAAATCTTATATCAAGATAATGCTCGTAAAGCTTTGGAAAA
AGGTATGGATATTCTAGTTGAGGCGGTTGCTATAACTCTCGGTCCGAAAG
GCAGAAATGTTGTATTAGAAAGAAAATTTGGTGCTCCTCAGATTATTAAT
GATGGTGTAACTATTGCTAAAGAAATAGAACTGAAGGATTTGACAGAAAA
TACTGGTGTTGCATTGATTAGGCAGGCAGCGTCAAAAACTAATGATGTGG
CTGGCGATGGTACAACTACAGCAACTGTATTGGCTCATGCCATAGTGAAA
CAGGGTCTTAAAAATGTTGCAGCTGGAGCTAATCCTATTATTTTAAAGAA
AGGCATACAAAAAGCAGTTAAATTCGTTGTTGCGAAGATTGCAGAATATT
CTAAACCTATTTGTAATATGCAAGATGTTACTCATATTGGTTCTATCTCT
TCCGGTAATGATTTTGAAGTTGGAACGATGATTGCTAATGCCATTCAGCA
AGTAGGAAAAGAAGGTATAATTTCTCTAGAAGAAGGTCAGTCTACAACTA
TAGAATTAGATATTAAAGAAGGGATGAAATTTGATAAAGGTTTTATCTCT
CCATACTTTGTTACCGATACATCTCGTATGGAGGTAATACAAGATAATCC
ATATATATTAATAACAGATAAAAAAATTACACTTATTCAGCAAGAGTTAT
TGCCTATACTCGAAAAAGTTACTAAAACGGGTCGTCCATTACTTATCATA
GCTGAAGATATAGAAAAAGAGGCTTTAGCGACTATTATAGTAAATAAACT
AAGAGGTATTATTAATGTAGTTGCTGTTAGAGCACCTGGTTTTGGAGATA
GAAGAAAATTATTATTAGAAGATATAGCAATTCTAACTTCAGGGGTAGTT
ATTACGCAAGATATGGGCTTGAGTTTAGATAATATAAATTTAGATCAACT
AGGCTCTGCTAGAAGAGTTCAAATTACGAAAGATTCTACAACAATTGTTG
CAGATGCACAAAAAGATCTTATTCAAGCACGTTGTGACCAAATCAGGAGA
CAATTAGAAGCTGCTACTAATTGTTATGAAAAAGATAAATTGCATGAGAG
GCTTGCGAAACTATCTGGAGGTGTTGCTGTAGTTAAAGTAGGTGCTGCAA
CTGAAACAGAAATGAGAGACAAAAAACTTCGCTTAGAAGACGCTATTAAC
GCAACTAAAGCAGCTATTGAAGAAGGTATAGTACCGGGTGGTGGTTCTAC
ATTTGTTCACTTATCTAAAGTTTTACGAGTTTGGGCTGTAGATAATTTAA
TTGGAGAAGAGTTAGTGGGTGCATTGATCATAGTTGATTCTCTATTATAT
CCTCTCAAGAGAATAGTCGAAAATGCGGGTAGTAATGGAGCGATCATTGT
AGAGAAAATTAAAAATAGTAATTTTTCTACGGGTTATAATGCTGACATTG
GTCAAATAGTCGATATGTATGAAGAAGGCATAATTGATCCGGCTAAAGTC
ACGCGTTCTGCTTTACAAAACGCAGCCTCAATAGCTTCTATGATTTTGAC
TACAGAATGTTTGATAGCAGAACAAGTAGATAGTTAA

Coding sequence (CDS) from alignment at tig00000237_pilon:157102..158688-

>Gchil1137.t1 ID=Gchil1137.t1|Name=Gchil1137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1587bp|location=Sequence derived from alignment at tig00000237_pilon:157102..158688- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAAAAAAATCTTATATCAAGATAATGCTCGTAAAGCTTTGGAAAA
AGGTATGGATATTCTAGTTGAGGCGGTTGCTATAACTCTCGGTCCGAAAG
GCAGAAATGTTGTATTAGAAAGAAAATTTGGTGCTCCTCAGATTATTAAT
GATGGTGTAACTATTGCTAAAGAAATAGAACTGAAGGATTTGACAGAAAA
TACTGGTGTTGCATTGATTAGGCAGGCAGCGTCAAAAACTAATGATGTGG
CTGGCGATGGTACAACTACAGCAACTGTATTGGCTCATGCCATAGTGAAA
CAGGGTCTTAAAAATGTTGCAGCTGGAGCTAATCCTATTATTTTAAAGAA
AGGCATACAAAAAGCAGTTAAATTCGTTGTTGCGAAGATTGCAGAATATT
CTAAACCTATTTGTAATATGCAAGATGTTACTCATATTGGTTCTATCTCT
TCCGGTAATGATTTTGAAGTTGGAACGATGATTGCTAATGCCATTCAGCA
AGTAGGAAAAGAAGGTATAATTTCTCTAGAAGAAGGTCAGTCTACAACTA
TAGAATTAGATATTAAAGAAGGGATGAAATTTGATAAAGGTTTTATCTCT
CCATACTTTGTTACCGATACATCTCGTATGGAGGTAATACAAGATAATCC
ATATATATTAATAACAGATAAAAAAATTACACTTATTCAGCAAGAGTTAT
TGCCTATACTCGAAAAAGTTACTAAAACGGGTCGTCCATTACTTATCATA
GCTGAAGATATAGAAAAAGAGGCTTTAGCGACTATTATAGTAAATAAACT
AAGAGGTATTATTAATGTAGTTGCTGTTAGAGCACCTGGTTTTGGAGATA
GAAGAAAATTATTATTAGAAGATATAGCAATTCTAACTTCAGGGGTAGTT
ATTACGCAAGATATGGGCTTGAGTTTAGATAATATAAATTTAGATCAACT
AGGCTCTGCTAGAAGAGTTCAAATTACGAAAGATTCTACAACAATTGTTG
CAGATGCACAAAAAGATCTTATTCAAGCACGTTGTGACCAAATCAGGAGA
CAATTAGAAGCTGCTACTAATTGTTATGAAAAAGATAAATTGCATGAGAG
GCTTGCGAAACTATCTGGAGGTGTTGCTGTAGTTAAAGTAGGTGCTGCAA
CTGAAACAGAAATGAGAGACAAAAAACTTCGCTTAGAAGACGCTATTAAC
GCAACTAAAGCAGCTATTGAAGAAGGTATAGTACCGGGTGGTGGTTCTAC
ATTTGTTCACTTATCTAAAGTTTTACGAGTTTGGGCTGTAGATAATTTAA
TTGGAGAAGAGTTAGTGGGTGCATTGATCATAGTTGATTCTCTATTATAT
CCTCTCAAGAGAATAGTCGAAAATGCGGGTAGTAATGGAGCGATCATTGT
AGAGAAAATTAAAAATAGTAATTTTTCTACGGGTTATAATGCTGACATTG
GTCAAATAGTCGATATGTATGAAGAAGGCATAATTGATCCGGCTAAAGTC
ACGCGTTCTGCTTTACAAAACGCAGCCTCAATAGCTTCTATGATTTTGAC
TACAGAATGTTTGATAGCAGAACAAGTAGATAGTTAA