Gchil1135.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1135.t1
Unique NameGchil1135.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:136030..136779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704987.1
Preferred namethiG
PFAMsThiG
Max annot lvl2759|Eukaryota
KEGG rclassRC03096,RC03097,RC03461
KEGG koko:K03149
KEGG ReactionR10247
KEGG Pathwayko00730,ko01100,map00730,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.11e-105
EggNOG OGsCOG2022@1|root,2RCR5@2759|Eukaryota
EC2.8.1.10
Descriptionthiamine diphosphate biosynthetic process
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1135Gchil1135Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 136030..136779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1135.t1.stop1Gchil1135.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 136030..136032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1135.t1.CDS1Gchil1135.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 136030..136779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1135.t1.exon1Gchil1135.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 136030..136779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1135.t1.start1Gchil1135.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 136777..136779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1135.t1Gchil1135.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 136030..136779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1135.t1 ID=Gchil1135.t1|Name=Gchil1135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MLGTGKYRSTKSASISIRNSSASIVTVAIRRAYNNKLKGKSSLLDGLDWK
KLWLLPNTAGCETVEEAIRIAILGREMTRRLGQVDNNFVKLEVIADSEYL
FPDPYGTLKAAEYLVSNNFTVLPYINPDPVLAKQLEEVGCSAIMPLGSPI
GSGQGLQNLLNLQIIINDAKVPIIIDAGIGTASEASQAMEMGASGVLLNT
AVAKATNPEYMAEAMKLGVISGRIAYLSGRISKEDRAIASSPSEGILIK*
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spliced messenger RNA

>Gchil1135.t1 ID=Gchil1135.t1|Name=Gchil1135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000237_pilon:136030..136779- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGGTACGGGTAAATATAGAAGTACAAAAAGTGCGAGTATCAGTAT
AAGAAATAGTTCCGCTTCTATTGTTACAGTAGCCATTCGGCGTGCATACA
ATAATAAGCTTAAAGGTAAAAGTAGTTTATTAGACGGATTAGATTGGAAG
AAGTTATGGCTGTTACCTAACACAGCTGGTTGTGAAACAGTAGAAGAAGC
TATAAGAATTGCTATTTTAGGTCGAGAAATGACAAGAAGGTTAGGACAAG
TTGATAATAATTTCGTTAAATTAGAAGTGATAGCAGATTCAGAATATTTA
TTTCCAGATCCTTATGGTACTTTAAAAGCTGCAGAATATCTTGTAAGTAA
TAATTTCACTGTACTTCCTTACATAAATCCGGATCCTGTTTTGGCTAAGC
AATTAGAAGAAGTCGGCTGTTCTGCAATTATGCCGTTAGGTTCTCCTATA
GGTTCTGGACAAGGCTTGCAAAACCTTCTAAATTTACAAATTATTATAAA
TGATGCAAAAGTTCCTATTATCATAGACGCTGGTATTGGAACAGCTAGTG
AAGCTAGTCAAGCTATGGAAATGGGAGCATCTGGAGTACTATTAAATACA
GCTGTTGCTAAAGCTACTAATCCTGAGTATATGGCAGAAGCTATGAAGCT
TGGAGTTATATCAGGTCGTATTGCATACCTATCTGGTAGGATTTCAAAAG
AAGACAGGGCTATAGCAAGTTCACCTTCTGAAGGTATACTCATAAAGTAA
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protein sequence of Gchil1135.t1

>Gchil1135.t1 ID=Gchil1135.t1|Name=Gchil1135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MLGTGKYRSTKSASISIRNSSASIVTVAIRRAYNNKLKGKSSLLDGLDWK
KLWLLPNTAGCETVEEAIRIAILGREMTRRLGQVDNNFVKLEVIADSEYL
FPDPYGTLKAAEYLVSNNFTVLPYINPDPVLAKQLEEVGCSAIMPLGSPI
GSGQGLQNLLNLQIIINDAKVPIIIDAGIGTASEASQAMEMGASGVLLNT
AVAKATNPEYMAEAMKLGVISGRIAYLSGRISKEDRAIASSPSEGILIK*
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mRNA from alignment at tig00000237_pilon:136030..136779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1135.t1 ID=Gchil1135.t1|Name=Gchil1135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000237_pilon:136030..136779- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGGTACGGGTAAATATAGAAGTACAAAAAGTGCGAGTATCAGTAT
AAGAAATAGTTCCGCTTCTATTGTTACAGTAGCCATTCGGCGTGCATACA
ATAATAAGCTTAAAGGTAAAAGTAGTTTATTAGACGGATTAGATTGGAAG
AAGTTATGGCTGTTACCTAACACAGCTGGTTGTGAAACAGTAGAAGAAGC
TATAAGAATTGCTATTTTAGGTCGAGAAATGACAAGAAGGTTAGGACAAG
TTGATAATAATTTCGTTAAATTAGAAGTGATAGCAGATTCAGAATATTTA
TTTCCAGATCCTTATGGTACTTTAAAAGCTGCAGAATATCTTGTAAGTAA
TAATTTCACTGTACTTCCTTACATAAATCCGGATCCTGTTTTGGCTAAGC
AATTAGAAGAAGTCGGCTGTTCTGCAATTATGCCGTTAGGTTCTCCTATA
GGTTCTGGACAAGGCTTGCAAAACCTTCTAAATTTACAAATTATTATAAA
TGATGCAAAAGTTCCTATTATCATAGACGCTGGTATTGGAACAGCTAGTG
AAGCTAGTCAAGCTATGGAAATGGGAGCATCTGGAGTACTATTAAATACA
GCTGTTGCTAAAGCTACTAATCCTGAGTATATGGCAGAAGCTATGAAGCT
TGGAGTTATATCAGGTCGTATTGCATACCTATCTGGTAGGATTTCAAAAG
AAGACAGGGCTATAGCAAGTTCACCTTCTGAAGGTATACTCATAAAGTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:136030..136779-

>Gchil1135.t1 ID=Gchil1135.t1|Name=Gchil1135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000237_pilon:136030..136779- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGGTACGGGTAAATATAGAAGTACAAAAAGTGCGAGTATCAGTAT
AAGAAATAGTTCCGCTTCTATTGTTACAGTAGCCATTCGGCGTGCATACA
ATAATAAGCTTAAAGGTAAAAGTAGTTTATTAGACGGATTAGATTGGAAG
AAGTTATGGCTGTTACCTAACACAGCTGGTTGTGAAACAGTAGAAGAAGC
TATAAGAATTGCTATTTTAGGTCGAGAAATGACAAGAAGGTTAGGACAAG
TTGATAATAATTTCGTTAAATTAGAAGTGATAGCAGATTCAGAATATTTA
TTTCCAGATCCTTATGGTACTTTAAAAGCTGCAGAATATCTTGTAAGTAA
TAATTTCACTGTACTTCCTTACATAAATCCGGATCCTGTTTTGGCTAAGC
AATTAGAAGAAGTCGGCTGTTCTGCAATTATGCCGTTAGGTTCTCCTATA
GGTTCTGGACAAGGCTTGCAAAACCTTCTAAATTTACAAATTATTATAAA
TGATGCAAAAGTTCCTATTATCATAGACGCTGGTATTGGAACAGCTAGTG
AAGCTAGTCAAGCTATGGAAATGGGAGCATCTGGAGTACTATTAAATACA
GCTGTTGCTAAAGCTACTAATCCTGAGTATATGGCAGAAGCTATGAAGCT
TGGAGTTATATCAGGTCGTATTGCATACCTATCTGGTAGGATTTCAAAAG
AAGACAGGGCTATAGCAAGTTCACCTTCTGAAGGTATACTCATAAAGTAA
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