Gchil1132.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1132.t1
Unique Name	Gchil1132.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:79301..80176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35641
Preferred name	cfxQ
PFAMs	AAA
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	2.45e-165
EggNOG OGs	COG0464@1\|root,KOG0730@2759\|Eukaryota
Description	ATP binding
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1132	Gchil1132	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 79301..80176 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1132.t1.start1	Gchil1132.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 79301..79303 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1132.t1.CDS1	Gchil1132.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 79301..80176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1132.t1.exon1	Gchil1132.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 79301..80176 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1132.t1.stop1	Gchil1132.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 80174..80176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1132.t1	Gchil1132.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 79301..80176 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:79301..80176+
coding sequence from alignment at tig00000237_pilon:79301..80176+

mRNA sequence

>Gchil1132.t1 ID=Gchil1132.t1|Name=Gchil1132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MIDNTLVNLQEEYNKTQIQEVLDELQQELVGLQPVKTRIKEIAALLLVDR
LRNNLGLVSGSPGLHMSFTGSPGTGKTTVAMKMADILNRLGYIRRGNLMT
VTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAE
AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDY
TAEELLAIAKLMLEEQQYRFAPEADKVLLEYADRRMKQPHFANARSIRNA
IDRARMRQANRIFISGDKILTKNDLVTIKAEDILKSRLFTP*

spliced messenger RNA

>Gchil1132.t1 ID=Gchil1132.t1|Name=Gchil1132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000237_pilon:79301..80176+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATAATACTTTAGTAAATTTACAAGAAGAATATAATAAAACGCA
AATACAAGAAGTTTTAGATGAATTACAACAAGAATTAGTTGGTCTGCAGC
CAGTTAAAACGAGGATTAAAGAAATAGCAGCGTTATTGTTGGTTGATAGA
CTAAGAAATAATTTAGGTCTAGTATCTGGTAGTCCTGGATTACATATGTC
TTTCACAGGAAGTCCTGGAACGGGTAAAACAACTGTTGCTATGAAGATGG
CAGACATTTTGAATAGATTAGGTTACATTAGAAGAGGTAATTTAATGACC
GTCACTAGAGATGATCTTGTAGGTCAATATATAGGTCATACTGCTCCAAA
AACTAAAGAAGTTCTCAAGCAAGCAATGGGAGGAGTATTATTTATTGATG
AAGCTTATTATCTTTATAAACCAGATAATGAAAGAGACTATGGAGCAGAA
GCGATAGAGATTTTATTACAAGTCATGGAAAATCAGCGAGATGATTTAGT
TGTAATTTTCGCTGGTTATAAAGATAGAATGGATAAGTTTTATGAGTCCA
ATCCAGGTTTATCATCTAGAGTAACAAATCATGTAGATTTTCCAGACTAT
ACTGCTGAAGAACTATTAGCTATTGCTAAACTAATGTTAGAAGAGCAACA
ATACCGTTTTGCACCGGAGGCAGATAAAGTACTTTTAGAATACGCAGATA
GGCGTATGAAACAACCTCATTTCGCAAATGCTCGTAGCATACGCAATGCA
ATCGATAGAGCTAGAATGAGACAAGCAAATAGAATTTTTATTAGTGGAGA
TAAAATTTTGACTAAAAATGATCTAGTCACTATTAAAGCAGAAGATATAT
TAAAAAGCCGTTTATTTACTCCATAG

protein sequence of Gchil1132.t1

>Gchil1132.t1 ID=Gchil1132.t1|Name=Gchil1132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MIDNTLVNLQEEYNKTQIQEVLDELQQELVGLQPVKTRIKEIAALLLVDR
LRNNLGLVSGSPGLHMSFTGSPGTGKTTVAMKMADILNRLGYIRRGNLMT
VTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERDYGAE
AIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRVTNHVDFPDY
TAEELLAIAKLMLEEQQYRFAPEADKVLLEYADRRMKQPHFANARSIRNA
IDRARMRQANRIFISGDKILTKNDLVTIKAEDILKSRLFTP*

mRNA from alignment at tig00000237_pilon:79301..80176+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1132.t1 ID=Gchil1132.t1|Name=Gchil1132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000237_pilon:79301..80176+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATAATACTTTAGTAAATTTACAAGAAGAATATAATAAAACGCA
AATACAAGAAGTTTTAGATGAATTACAACAAGAATTAGTTGGTCTGCAGC
CAGTTAAAACGAGGATTAAAGAAATAGCAGCGTTATTGTTGGTTGATAGA
CTAAGAAATAATTTAGGTCTAGTATCTGGTAGTCCTGGATTACATATGTC
TTTCACAGGAAGTCCTGGAACGGGTAAAACAACTGTTGCTATGAAGATGG
CAGACATTTTGAATAGATTAGGTTACATTAGAAGAGGTAATTTAATGACC
GTCACTAGAGATGATCTTGTAGGTCAATATATAGGTCATACTGCTCCAAA
AACTAAAGAAGTTCTCAAGCAAGCAATGGGAGGAGTATTATTTATTGATG
AAGCTTATTATCTTTATAAACCAGATAATGAAAGAGACTATGGAGCAGAA
GCGATAGAGATTTTATTACAAGTCATGGAAAATCAGCGAGATGATTTAGT
TGTAATTTTCGCTGGTTATAAAGATAGAATGGATAAGTTTTATGAGTCCA
ATCCAGGTTTATCATCTAGAGTAACAAATCATGTAGATTTTCCAGACTAT
ACTGCTGAAGAACTATTAGCTATTGCTAAACTAATGTTAGAAGAGCAACA
ATACCGTTTTGCACCGGAGGCAGATAAAGTACTTTTAGAATACGCAGATA
GGCGTATGAAACAACCTCATTTCGCAAATGCTCGTAGCATACGCAATGCA
ATCGATAGAGCTAGAATGAGACAAGCAAATAGAATTTTTATTAGTGGAGA
TAAAATTTTGACTAAAAATGATCTAGTCACTATTAAAGCAGAAGATATAT
TAAAAAGCCGTTTATTTACTCCATAG

Coding sequence (CDS) from alignment at tig00000237_pilon:79301..80176+

>Gchil1132.t1 ID=Gchil1132.t1|Name=Gchil1132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000237_pilon:79301..80176+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATAATACTTTAGTAAATTTACAAGAAGAATATAATAAAACGCA
AATACAAGAAGTTTTAGATGAATTACAACAAGAATTAGTTGGTCTGCAGC
CAGTTAAAACGAGGATTAAAGAAATAGCAGCGTTATTGTTGGTTGATAGA
CTAAGAAATAATTTAGGTCTAGTATCTGGTAGTCCTGGATTACATATGTC
TTTCACAGGAAGTCCTGGAACGGGTAAAACAACTGTTGCTATGAAGATGG
CAGACATTTTGAATAGATTAGGTTACATTAGAAGAGGTAATTTAATGACC
GTCACTAGAGATGATCTTGTAGGTCAATATATAGGTCATACTGCTCCAAA
AACTAAAGAAGTTCTCAAGCAAGCAATGGGAGGAGTATTATTTATTGATG
AAGCTTATTATCTTTATAAACCAGATAATGAAAGAGACTATGGAGCAGAA
GCGATAGAGATTTTATTACAAGTCATGGAAAATCAGCGAGATGATTTAGT
TGTAATTTTCGCTGGTTATAAAGATAGAATGGATAAGTTTTATGAGTCCA
ATCCAGGTTTATCATCTAGAGTAACAAATCATGTAGATTTTCCAGACTAT
ACTGCTGAAGAACTATTAGCTATTGCTAAACTAATGTTAGAAGAGCAACA
ATACCGTTTTGCACCGGAGGCAGATAAAGTACTTTTAGAATACGCAGATA
GGCGTATGAAACAACCTCATTTCGCAAATGCTCGTAGCATACGCAATGCA
ATCGATAGAGCTAGAATGAGACAAGCAAATAGAATTTTTATTAGTGGAGA
TAAAATTTTGACTAAAAATGATCTAGTCACTATTAAAGCAGAAGATATAT
TAAAAAGCCGTTTATTTACTCCATAG