Gchil1131.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1131.t1
Unique NameGchil1131.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:77282..78673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMV013CT
Preferred namerbcL
PFAMsRuBisCO_large,RuBisCO_large_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00172,RC00253,RC00367,RC00859
KEGG koko:K01601,ko:K01963
KEGG ReactionR00024,R00742,R03140,R04386
KEGG Pathwayko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00165,M00166,M00376,M00532
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue6.78e-278
EggNOG OGsCOG1850@1|root,2QTI9@2759|Eukaryota
EC2.1.3.15,4.1.1.39,6.4.1.2
Descriptionribulose-bisphosphate carboxylase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1131Gchil1131Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 77282..78673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1Gchil1131.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 77282..78673 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1.start1Gchil1131.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 77282..77284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1.CDS1Gchil1131.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 77282..78104 +
Gchil1131.t1.CDS2Gchil1131.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 78186..78673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1.exon1Gchil1131.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 77282..78104 +
Gchil1131.t1.exon2Gchil1131.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 78186..78673 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1.intron1Gchil1131.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000237_pilon 78105..78185 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1131.t1.stop1Gchil1131.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 78671..78673 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1131.t1 ID=Gchil1131.t1|Name=Gchil1131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MGYWDPNYVVKETDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDAVPNTTDQYFAFIAYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRIPVAYLKTFQGPATGLVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWKERFLYS
MEGVNRAIAASGEVKGHYMNVTAATMEEMYERAEFAKQLGSVIVMIDLVI
GYTAIQTMAIWARRNDMILHLHRADHIHAGTVVGKLEGDPLMIKGFYNTL
LQTHLKVDLPQGIFFEQDWASLRKVTPVASGGIHCGQMHQLLDYLGNDVV
LQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVAEGPQILRDAA
KTCGPLQTALDLWKDITFNYTSTDTADFVETPTANV*
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spliced messenger RNA

>Gchil1131.t1 ID=Gchil1131.t1|Name=Gchil1131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000237_pilon:77282..78673+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATATTGGGATCCTAATTACGTCGTGAAAGAAACTGATGTACTGGC
TTTGTTTCGTGTTACTCCACAACCTGGAGTTGATCCAGTAGAAGCTTCTG
CTGCAGTTGCAGGTGAATCATCTACAGCTACTTGGACTGTTGTTTGGACA
GACTTATTAACAGCTTGTGATTTATATAGAGCTAAAGCTTATAAAGTAGA
TGCGGTTCCAAATACTACAGATCAGTATTTTGCATTTATTGCTTACGATA
TTGATCTCTTCGAAGAAGGCTCTATTGCAAATTTAACAGCTTCAATTATT
GGTAACGTATTTGGCTTTAAAGCAGTTAAAGCTTTACGATTAGAGGATAT
GCGTATACCTGTTGCTTATTTGAAGACTTTCCAAGGTCCGGCTACTGGAT
TAGTCGTAGAGCGTGAACGTATGGATAAGTTTGGCCGTCCGTTTTTGGGT
GCAACAGTTAAGCCTAAACTAGGGCTATCTGGTAAAAATTACGGGAGAGT
TGTATACGAAGGCTTGAAAGGAGGCTTAGACTTTTTGAAAGATGATGAAA
ATATCAACTCTCAACCTTTCATGCGCTGGAAAGAAAGATTTCTATATTCA
ATGGAGGGTGTGAATAGAGCGATTGCCGCAAGTGGCGAAGTTAAGGGACA
CTATATGAATGTCACAGCTGCCACAATGGAAGAGATGTATGAGAGAGCTG
AATTTGCTAAACAATTAGGAAGCGTCATCGTTATGATTGACCTTGTTATT
GGTTATACAGCAATCCAAACTATGGCTATATGGGCGCGCAGAAATGATAT
GATTTTACACTTGCATCGTGCAGATCATATCCATGCTGGTACTGTGGTTG
GTAAGTTAGAAGGTGATCCATTAATGATCAAAGGTTTCTATAATACTTTA
CTTCAAACACATTTGAAGGTTGATTTACCGCAGGGTATATTTTTTGAACA
GGATTGGGCATCTTTACGTAAGGTTACACCTGTTGCTTCAGGCGGTATTC
ATTGTGGACAGATGCATCAGTTGTTAGACTACTTAGGTAATGATGTTGTT
CTTCAATTTGGGGGAGGTACAATTGGTCATCCAGATGGTATACAAGCAGG
TGCAACAGCTAATCGTGTTGCATTAGAAGCTATGGTTTTAGCCCGTAATG
AAGGTCGCGATTATGTAGCAGAGGGGCCACAAATTTTACGAGATGCCGCA
AAAACTTGTGGACCTTTACAAACTGCTTTAGACCTATGGAAAGATATTAC
CTTTAATTATACTTCTACAGATACAGCTGATTTTGTTGAAACTCCAACAG
CGAATGTATAA
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protein sequence of Gchil1131.t1

>Gchil1131.t1 ID=Gchil1131.t1|Name=Gchil1131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MGYWDPNYVVKETDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDAVPNTTDQYFAFIAYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRIPVAYLKTFQGPATGLVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWKERFLYS
MEGVNRAIAASGEVKGHYMNVTAATMEEMYERAEFAKQLGSVIVMIDLVI
GYTAIQTMAIWARRNDMILHLHRADHIHAGTVVGKLEGDPLMIKGFYNTL
LQTHLKVDLPQGIFFEQDWASLRKVTPVASGGIHCGQMHQLLDYLGNDVV
LQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVAEGPQILRDAA
KTCGPLQTALDLWKDITFNYTSTDTADFVETPTANV*
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mRNA from alignment at tig00000237_pilon:77282..78673+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1131.t1 ID=Gchil1131.t1|Name=Gchil1131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000237_pilon:77282..78673+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATATTGGGATCCTAATTACGTCGTGAAAGAAACTGATGTACTGGC
TTTGTTTCGTGTTACTCCACAACCTGGAGTTGATCCAGTAGAAGCTTCTG
CTGCAGTTGCAGGTGAATCATCTACAGCTACTTGGACTGTTGTTTGGACA
GACTTATTAACAGCTTGTGATTTATATAGAGCTAAAGCTTATAAAGTAGA
TGCGGTTCCAAATACTACAGATCAGTATTTTGCATTTATTGCTTACGATA
TTGATCTCTTCGAAGAAGGCTCTATTGCAAATTTAACAGCTTCAATTATT
GGTAACGTATTTGGCTTTAAAGCAGTTAAAGCTTTACGATTAGAGGATAT
GCGTATACCTGTTGCTTATTTGAAGACTTTCCAAGGTCCGGCTACTGGAT
TAGTCGTAGAGCGTGAACGTATGGATAAGTTTGGCCGTCCGTTTTTGGGT
GCAACAGTTAAGCCTAAACTAGGGCTATCTGGTAAAAATTACGGGAGAGT
TGTATACGAAGGCTTGAAAGGAGGCTTAGACTTTTTGAAAGATGATGAAA
ATATCAACTCTCAACCTTTCATGCGCTGGAAAGAAAGATTTCTATATTCA
ATGGAGGGTGTGAATAGAGCGATTGCCGCAAGTGGCGAAGTTAAGGGACA
CTATATGAATGTCACAGCTGCCACAATGGAAGAGATGTATGAGAGAGCTG
AATTTGCTAAACAATTAGGAAGCGTCATCGTTATGATTGACCTTGTTATT
GGTTATACAGCAATCCAAACTATGGCTATATGGGCGCGCAGAAATGATAT
GATTTTACACTTGCATCGTGCAGGTAATTCAACATATTCTCGTCAGAAAA
TCCATGGCATGAATTTTCGTGTTATCTGTAAATGGATGCGTATGTCTGGC
GTAGATCATATCCATGCTGGTACTGTGGTTGGTAAGTTAGAAGGTGATCC
ATTAATGATCAAAGGTTTCTATAATACTTTACTTCAAACACATTTGAAGG
TTGATTTACCGCAGGGTATATTTTTTGAACAGGATTGGGCATCTTTACGT
AAGGTTACACCTGTTGCTTCAGGCGGTATTCATTGTGGACAGATGCATCA
GTTGTTAGACTACTTAGGTAATGATGTTGTTCTTCAATTTGGGGGAGGTA
CAATTGGTCATCCAGATGGTATACAAGCAGGTGCAACAGCTAATCGTGTT
GCATTAGAAGCTATGGTTTTAGCCCGTAATGAAGGTCGCGATTATGTAGC
AGAGGGGCCACAAATTTTACGAGATGCCGCAAAAACTTGTGGACCTTTAC
AAACTGCTTTAGACCTATGGAAAGATATTACCTTTAATTATACTTCTACA
GATACAGCTGATTTTGTTGAAACTCCAACAGCGAATGTATAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:77282..78673+

>Gchil1131.t1 ID=Gchil1131.t1|Name=Gchil1131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000237_pilon:77282..78673+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGATATTGGGATCCTAATTACGTCGTGAAAGAAACTGATGTACTGGC
TTTGTTTCGTGTTACTCCACAACCTGGAGTTGATCCAGTAGAAGCTTCTG
CTGCAGTTGCAGGTGAATCATCTACAGCTACTTGGACTGTTGTTTGGACA
GACTTATTAACAGCTTGTGATTTATATAGAGCTAAAGCTTATAAAGTAGA
TGCGGTTCCAAATACTACAGATCAGTATTTTGCATTTATTGCTTACGATA
TTGATCTCTTCGAAGAAGGCTCTATTGCAAATTTAACAGCTTCAATTATT
GGTAACGTATTTGGCTTTAAAGCAGTTAAAGCTTTACGATTAGAGGATAT
GCGTATACCTGTTGCTTATTTGAAGACTTTCCAAGGTCCGGCTACTGGAT
TAGTCGTAGAGCGTGAACGTATGGATAAGTTTGGCCGTCCGTTTTTGGGT
GCAACAGTTAAGCCTAAACTAGGGCTATCTGGTAAAAATTACGGGAGAGT
TGTATACGAAGGCTTGAAAGGAGGCTTAGACTTTTTGAAAGATGATGAAA
ATATCAACTCTCAACCTTTCATGCGCTGGAAAGAAAGATTTCTATATTCA
ATGGAGGGTGTGAATAGAGCGATTGCCGCAAGTGGCGAAGTTAAGGGACA
CTATATGAATGTCACAGCTGCCACAATGGAAGAGATGTATGAGAGAGCTG
AATTTGCTAAACAATTAGGAAGCGTCATCGTTATGATTGACCTTGTTATT
GGTTATACAGCAATCCAAACTATGGCTATATGGGCGCGCAGAAATGATAT
GATTTTACACTTGCATCGTGCAGATCATATCCATGCTGGTACTGTGGTTG
GTAAGTTAGAAGGTGATCCATTAATGATCAAAGGTTTCTATAATACTTTA
CTTCAAACACATTTGAAGGTTGATTTACCGCAGGGTATATTTTTTGAACA
GGATTGGGCATCTTTACGTAAGGTTACACCTGTTGCTTCAGGCGGTATTC
ATTGTGGACAGATGCATCAGTTGTTAGACTACTTAGGTAATGATGTTGTT
CTTCAATTTGGGGGAGGTACAATTGGTCATCCAGATGGTATACAAGCAGG
TGCAACAGCTAATCGTGTTGCATTAGAAGCTATGGTTTTAGCCCGTAATG
AAGGTCGCGATTATGTAGCAGAGGGGCCACAAATTTTACGAGATGCCGCA
AAAACTTGTGGACCTTTACAAACTGCTTTAGACCTATGGAAAGATATTAC
CTTTAATTATACTTCTACAGATACAGCTGATTTTGTTGAAACTCCAACAG
CGAATGTATAA
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