Gchil1128.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1128.t1
Unique Name	Gchil1128.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:49630..51765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35676
Preferred name	rpoB
PFAMs	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5,RNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_45,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K03043,ko:K03046
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG Module	M00183
GOs	GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0061695,GO:1902494,GO:1990234
Evalue	0.0
EggNOG OGs	COG0085@1\|root,KOG0214@2759\|Eukaryota
EC	2.7.7.6
Description	DNA-directed 5'-3' RNA polymerase activity
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1128	Gchil1128	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 49630..51765 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1128.t1.start1	Gchil1128.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 49630..49632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1128.t1.CDS1	Gchil1128.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 49630..51765 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1128.t1.exon1	Gchil1128.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 49630..51765 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1128.t1.stop1	Gchil1128.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 51763..51765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1128.t1	Gchil1128.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 49630..51765 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:49630..51765+
coding sequence from alignment at tig00000237_pilon:49630..51765+

mRNA sequence

>Gchil1128.t1 ID=Gchil1128.t1|Name=Gchil1128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=712bp
MDQTNPLSELTHKRRISALGPGGLNKDRAGFAVRDLHPSHYGRICPIETP
EGPNAGLIGSLSIYAKVNRYGFIETPCYKVTNGQVLKKDKFYYITADQED
YLRIAPPDINLDVNNVIQDKIIAVRYKQEFITANINQVDYMAVSPIQFIS
AATSLIPFLEHDDANRALMGSNMQRQAVPLLFPEKSIVGTGLESKIAKDS
GMTIISRTNGIISYVSGTKIGIQNKEGYTIHYRLKKYYRSNQDTCINQRP
IVWPGKNVSIGQTIADGASTDGGEIALGRNIIVAYMPWEGYNYEDAFLIS
ERLVYEDLYTSIHIERYELECRQTKLGSEEITRDIPNVSEASIGLLDKNG
IISIGSWVDSGDILVGKVTPKGESDQLPEGKLLRAIFGEKARDVRDTSLR
LPNATKGRVVNIKIFKRQKGDELPPGTNEIIRVYVAQKRKIQVGDKMAGR
HGNKGIISRILSVQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGL
AGEYLGKRFKIIPFDEMYGSEASRALVNNKLKQASLINDKSWLFNALHPG
KVMLVDGRTGEFFDNPITVGKAYVLKLVHLVDDKIHARSTGPYSLVTQQP
LGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNDALNAI
VKGKPIPKPGTPESFKVLMRELQSLALDIAVHKLELLDNGDKASIEIDLM
SDEQIEQINSI*

spliced messenger RNA

>Gchil1128.t1 ID=Gchil1128.t1|Name=Gchil1128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00000237_pilon:49630..51765+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAAACAAATCCTTTGTCTGAGTTAACTCATAAAAGAAGAATCAG
CGCCTTAGGTCCCGGAGGTCTTAATAAAGATAGAGCAGGTTTTGCGGTTA
GGGATTTACATCCAAGCCATTATGGCCGTATATGTCCGATAGAAACGCCA
GAAGGACCAAATGCTGGTTTAATAGGTTCTTTAAGTATCTATGCTAAAGT
TAATAGATATGGTTTCATAGAAACTCCTTGTTATAAAGTGACTAATGGTC
AAGTATTAAAAAAGGATAAATTTTATTATATCACAGCTGACCAAGAAGAT
TATTTACGTATAGCTCCACCAGATATAAATTTAGACGTCAATAATGTTAT
ACAAGATAAAATAATTGCAGTGAGGTATAAGCAAGAGTTTATAACAGCCA
ATATTAATCAAGTAGATTATATGGCTGTTTCTCCGATTCAATTTATATCT
GCTGCTACATCTTTAATACCTTTTTTAGAACATGACGATGCTAATAGAGC
TTTGATGGGATCAAATATGCAAAGACAAGCAGTACCATTATTGTTCCCAG
AAAAATCCATTGTAGGCACAGGCCTAGAATCTAAGATTGCAAAAGATTCA
GGTATGACTATAATTAGTCGTACTAATGGTATTATTAGTTACGTATCCGG
AACTAAAATTGGTATACAAAATAAAGAAGGTTACACAATCCACTATAGAT
TAAAGAAATATTATCGTTCTAATCAAGACACTTGCATTAATCAAAGGCCT
ATTGTCTGGCCAGGAAAAAATGTTAGTATAGGTCAAACGATTGCGGATGG
TGCATCTACCGACGGTGGAGAAATAGCTTTAGGTCGAAATATTATAGTTG
CTTATATGCCTTGGGAAGGTTATAATTATGAGGATGCTTTTTTAATTAGT
GAGCGTCTAGTATACGAAGATTTGTATACTTCTATACATATTGAACGATA
TGAACTCGAATGCCGGCAGACTAAACTAGGTTCAGAAGAAATTACACGAG
ATATTCCCAATGTAAGCGAAGCTTCAATTGGTTTATTAGATAAAAATGGC
ATCATTTCAATTGGCTCTTGGGTAGATTCTGGTGATATATTAGTAGGTAA
AGTTACTCCTAAAGGAGAATCTGATCAATTACCAGAAGGAAAATTGCTAA
GGGCTATATTTGGTGAAAAGGCACGAGATGTACGTGATACATCTTTACGA
TTACCTAATGCTACTAAAGGTAGGGTGGTTAATATAAAAATTTTTAAACG
CCAAAAAGGAGATGAGCTTCCACCAGGAACCAATGAAATTATCAGAGTTT
ATGTGGCGCAGAAACGAAAAATTCAAGTAGGAGATAAAATGGCTGGTCGT
CATGGTAATAAAGGTATTATTTCACGAATTTTATCTGTACAAGATATGCC
TTTTCTACCGGATGGTACTCCTGTAGATATTATTTTAAATCCTTTAGGTG
TTCCATCAAGGATGAATGTGGGTCAGCTATTTGAATGTTTGCTCGGTTTA
GCGGGTGAATACTTAGGTAAACGTTTCAAAATTATACCGTTTGATGAAAT
GTACGGTTCAGAAGCTTCTCGTGCTTTAGTTAATAATAAATTGAAACAAG
CTAGCTTAATTAATGATAAATCTTGGTTATTTAATGCTTTGCATCCTGGT
AAAGTTATGTTGGTAGATGGCAGAACTGGTGAATTTTTTGATAATCCTAT
TACAGTTGGCAAAGCGTATGTTTTAAAGCTTGTTCATTTAGTAGACGATA
AGATTCATGCACGTTCTACAGGACCTTATTCTTTAGTAACACAACAACCC
TTAGGAGGACGAGCTCAGCATGGAGGCCAGCGTTTAGGAGAAATGGAAGT
ATGGGCGTTAGAAGCATTTGGAGCGGCTTATACTTTGCAAGAATTATTAA
CAGTTAAGTCAGATGATATGCAAGGCAGAAATGATGCTTTGAATGCAATA
GTTAAAGGTAAGCCTATACCTAAACCTGGAACACCTGAATCTTTTAAAGT
TCTCATGAGAGAATTACAATCTTTGGCACTTGATATAGCTGTACATAAAT
TAGAATTGCTTGATAATGGTGATAAAGCTAGTATAGAAATTGATTTAATG
TCTGATGAACAAATAGAACAAATAAATTCTATTTAA

protein sequence of Gchil1128.t1

>Gchil1128.t1 ID=Gchil1128.t1|Name=Gchil1128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=712bp
MDQTNPLSELTHKRRISALGPGGLNKDRAGFAVRDLHPSHYGRICPIETP
EGPNAGLIGSLSIYAKVNRYGFIETPCYKVTNGQVLKKDKFYYITADQED
YLRIAPPDINLDVNNVIQDKIIAVRYKQEFITANINQVDYMAVSPIQFIS
AATSLIPFLEHDDANRALMGSNMQRQAVPLLFPEKSIVGTGLESKIAKDS
GMTIISRTNGIISYVSGTKIGIQNKEGYTIHYRLKKYYRSNQDTCINQRP
IVWPGKNVSIGQTIADGASTDGGEIALGRNIIVAYMPWEGYNYEDAFLIS
ERLVYEDLYTSIHIERYELECRQTKLGSEEITRDIPNVSEASIGLLDKNG
IISIGSWVDSGDILVGKVTPKGESDQLPEGKLLRAIFGEKARDVRDTSLR
LPNATKGRVVNIKIFKRQKGDELPPGTNEIIRVYVAQKRKIQVGDKMAGR
HGNKGIISRILSVQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGL
AGEYLGKRFKIIPFDEMYGSEASRALVNNKLKQASLINDKSWLFNALHPG
KVMLVDGRTGEFFDNPITVGKAYVLKLVHLVDDKIHARSTGPYSLVTQQP
LGGRAQHGGQRLGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNDALNAI
VKGKPIPKPGTPESFKVLMRELQSLALDIAVHKLELLDNGDKASIEIDLM
SDEQIEQINSI*

mRNA from alignment at tig00000237_pilon:49630..51765+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1128.t1 ID=Gchil1128.t1|Name=Gchil1128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at tig00000237_pilon:49630..51765+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAAACAAATCCTTTGTCTGAGTTAACTCATAAAAGAAGAATCAG
CGCCTTAGGTCCCGGAGGTCTTAATAAAGATAGAGCAGGTTTTGCGGTTA
GGGATTTACATCCAAGCCATTATGGCCGTATATGTCCGATAGAAACGCCA
GAAGGACCAAATGCTGGTTTAATAGGTTCTTTAAGTATCTATGCTAAAGT
TAATAGATATGGTTTCATAGAAACTCCTTGTTATAAAGTGACTAATGGTC
AAGTATTAAAAAAGGATAAATTTTATTATATCACAGCTGACCAAGAAGAT
TATTTACGTATAGCTCCACCAGATATAAATTTAGACGTCAATAATGTTAT
ACAAGATAAAATAATTGCAGTGAGGTATAAGCAAGAGTTTATAACAGCCA
ATATTAATCAAGTAGATTATATGGCTGTTTCTCCGATTCAATTTATATCT
GCTGCTACATCTTTAATACCTTTTTTAGAACATGACGATGCTAATAGAGC
TTTGATGGGATCAAATATGCAAAGACAAGCAGTACCATTATTGTTCCCAG
AAAAATCCATTGTAGGCACAGGCCTAGAATCTAAGATTGCAAAAGATTCA
GGTATGACTATAATTAGTCGTACTAATGGTATTATTAGTTACGTATCCGG
AACTAAAATTGGTATACAAAATAAAGAAGGTTACACAATCCACTATAGAT
TAAAGAAATATTATCGTTCTAATCAAGACACTTGCATTAATCAAAGGCCT
ATTGTCTGGCCAGGAAAAAATGTTAGTATAGGTCAAACGATTGCGGATGG
TGCATCTACCGACGGTGGAGAAATAGCTTTAGGTCGAAATATTATAGTTG
CTTATATGCCTTGGGAAGGTTATAATTATGAGGATGCTTTTTTAATTAGT
GAGCGTCTAGTATACGAAGATTTGTATACTTCTATACATATTGAACGATA
TGAACTCGAATGCCGGCAGACTAAACTAGGTTCAGAAGAAATTACACGAG
ATATTCCCAATGTAAGCGAAGCTTCAATTGGTTTATTAGATAAAAATGGC
ATCATTTCAATTGGCTCTTGGGTAGATTCTGGTGATATATTAGTAGGTAA
AGTTACTCCTAAAGGAGAATCTGATCAATTACCAGAAGGAAAATTGCTAA
GGGCTATATTTGGTGAAAAGGCACGAGATGTACGTGATACATCTTTACGA
TTACCTAATGCTACTAAAGGTAGGGTGGTTAATATAAAAATTTTTAAACG
CCAAAAAGGAGATGAGCTTCCACCAGGAACCAATGAAATTATCAGAGTTT
ATGTGGCGCAGAAACGAAAAATTCAAGTAGGAGATAAAATGGCTGGTCGT
CATGGTAATAAAGGTATTATTTCACGAATTTTATCTGTACAAGATATGCC
TTTTCTACCGGATGGTACTCCTGTAGATATTATTTTAAATCCTTTAGGTG
TTCCATCAAGGATGAATGTGGGTCAGCTATTTGAATGTTTGCTCGGTTTA
GCGGGTGAATACTTAGGTAAACGTTTCAAAATTATACCGTTTGATGAAAT
GTACGGTTCAGAAGCTTCTCGTGCTTTAGTTAATAATAAATTGAAACAAG
CTAGCTTAATTAATGATAAATCTTGGTTATTTAATGCTTTGCATCCTGGT
AAAGTTATGTTGGTAGATGGCAGAACTGGTGAATTTTTTGATAATCCTAT
TACAGTTGGCAAAGCGTATGTTTTAAAGCTTGTTCATTTAGTAGACGATA
AGATTCATGCACGTTCTACAGGACCTTATTCTTTAGTAACACAACAACCC
TTAGGAGGACGAGCTCAGCATGGAGGCCAGCGTTTAGGAGAAATGGAAGT
ATGGGCGTTAGAAGCATTTGGAGCGGCTTATACTTTGCAAGAATTATTAA
CAGTTAAGTCAGATGATATGCAAGGCAGAAATGATGCTTTGAATGCAATA
GTTAAAGGTAAGCCTATACCTAAACCTGGAACACCTGAATCTTTTAAAGT
TCTCATGAGAGAATTACAATCTTTGGCACTTGATATAGCTGTACATAAAT
TAGAATTGCTTGATAATGGTGATAAAGCTAGTATAGAAATTGATTTAATG
TCTGATGAACAAATAGAACAAATAAATTCTATTTAA

Coding sequence (CDS) from alignment at tig00000237_pilon:49630..51765+

>Gchil1128.t1 ID=Gchil1128.t1|Name=Gchil1128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2136bp|location=Sequence derived from alignment at tig00000237_pilon:49630..51765+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAAACAAATCCTTTGTCTGAGTTAACTCATAAAAGAAGAATCAG
CGCCTTAGGTCCCGGAGGTCTTAATAAAGATAGAGCAGGTTTTGCGGTTA
GGGATTTACATCCAAGCCATTATGGCCGTATATGTCCGATAGAAACGCCA
GAAGGACCAAATGCTGGTTTAATAGGTTCTTTAAGTATCTATGCTAAAGT
TAATAGATATGGTTTCATAGAAACTCCTTGTTATAAAGTGACTAATGGTC
AAGTATTAAAAAAGGATAAATTTTATTATATCACAGCTGACCAAGAAGAT
TATTTACGTATAGCTCCACCAGATATAAATTTAGACGTCAATAATGTTAT
ACAAGATAAAATAATTGCAGTGAGGTATAAGCAAGAGTTTATAACAGCCA
ATATTAATCAAGTAGATTATATGGCTGTTTCTCCGATTCAATTTATATCT
GCTGCTACATCTTTAATACCTTTTTTAGAACATGACGATGCTAATAGAGC
TTTGATGGGATCAAATATGCAAAGACAAGCAGTACCATTATTGTTCCCAG
AAAAATCCATTGTAGGCACAGGCCTAGAATCTAAGATTGCAAAAGATTCA
GGTATGACTATAATTAGTCGTACTAATGGTATTATTAGTTACGTATCCGG
AACTAAAATTGGTATACAAAATAAAGAAGGTTACACAATCCACTATAGAT
TAAAGAAATATTATCGTTCTAATCAAGACACTTGCATTAATCAAAGGCCT
ATTGTCTGGCCAGGAAAAAATGTTAGTATAGGTCAAACGATTGCGGATGG
TGCATCTACCGACGGTGGAGAAATAGCTTTAGGTCGAAATATTATAGTTG
CTTATATGCCTTGGGAAGGTTATAATTATGAGGATGCTTTTTTAATTAGT
GAGCGTCTAGTATACGAAGATTTGTATACTTCTATACATATTGAACGATA
TGAACTCGAATGCCGGCAGACTAAACTAGGTTCAGAAGAAATTACACGAG
ATATTCCCAATGTAAGCGAAGCTTCAATTGGTTTATTAGATAAAAATGGC
ATCATTTCAATTGGCTCTTGGGTAGATTCTGGTGATATATTAGTAGGTAA
AGTTACTCCTAAAGGAGAATCTGATCAATTACCAGAAGGAAAATTGCTAA
GGGCTATATTTGGTGAAAAGGCACGAGATGTACGTGATACATCTTTACGA
TTACCTAATGCTACTAAAGGTAGGGTGGTTAATATAAAAATTTTTAAACG
CCAAAAAGGAGATGAGCTTCCACCAGGAACCAATGAAATTATCAGAGTTT
ATGTGGCGCAGAAACGAAAAATTCAAGTAGGAGATAAAATGGCTGGTCGT
CATGGTAATAAAGGTATTATTTCACGAATTTTATCTGTACAAGATATGCC
TTTTCTACCGGATGGTACTCCTGTAGATATTATTTTAAATCCTTTAGGTG
TTCCATCAAGGATGAATGTGGGTCAGCTATTTGAATGTTTGCTCGGTTTA
GCGGGTGAATACTTAGGTAAACGTTTCAAAATTATACCGTTTGATGAAAT
GTACGGTTCAGAAGCTTCTCGTGCTTTAGTTAATAATAAATTGAAACAAG
CTAGCTTAATTAATGATAAATCTTGGTTATTTAATGCTTTGCATCCTGGT
AAAGTTATGTTGGTAGATGGCAGAACTGGTGAATTTTTTGATAATCCTAT
TACAGTTGGCAAAGCGTATGTTTTAAAGCTTGTTCATTTAGTAGACGATA
AGATTCATGCACGTTCTACAGGACCTTATTCTTTAGTAACACAACAACCC
TTAGGAGGACGAGCTCAGCATGGAGGCCAGCGTTTAGGAGAAATGGAAGT
ATGGGCGTTAGAAGCATTTGGAGCGGCTTATACTTTGCAAGAATTATTAA
CAGTTAAGTCAGATGATATGCAAGGCAGAAATGATGCTTTGAATGCAATA
GTTAAAGGTAAGCCTATACCTAAACCTGGAACACCTGAATCTTTTAAAGT
TCTCATGAGAGAATTACAATCTTTGGCACTTGATATAGCTGTACATAAAT
TAGAATTGCTTGATAATGGTGATAAAGCTAGTATAGAAATTGATTTAATG
TCTGATGAACAAATAGAACAAATAAATTCTATTTAA