Gchil1127.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1127.t1
Unique NameGchil1127.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:42703..44124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35682
Preferred nameatpB
PFAMsATP-synt_DE,ATP-synt_DE_N,ATP-synt_ab,ATP-synt_ab_N
Max annot lvl2759|Eukaryota
KEGG koko:K02112,ko:K02114,ko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
GOsGO:0000275,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0008270,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009814,GO:0009817,GO:0009987,GO:0010035,GO:0010038,GO:0010287,GO:0010319,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0032991,GO:0033178,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042221,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045087,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046689,GO:0046872,GO:0046914,GO:0046933,GO:0050832,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098542,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098807,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
Evalue6.63e-280
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota
EC3.6.3.14
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1127Gchil1127Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 42703..44124 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1127.t1.stop1Gchil1127.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 42703..42705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1127.t1.CDS1Gchil1127.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 42703..44124 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1127.t1.exon1Gchil1127.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 42703..44124 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1127.t1.start1Gchil1127.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 44122..44124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1127.t1Gchil1127.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 42703..44124 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1127.t1 ID=Gchil1127.t1|Name=Gchil1127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MVSIKNQGCVTQIIGPVLDIEFPNGQLPKVFNALKVKGPENIITCEVQQL
LGDNRVRAVAMSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGETV
DNLGNIQSEDSLPIHRAAPLFTQLETKPSIFETGIKVVDLLAPYRKGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINADNLKESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDV
LLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTD
GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPL
GSTSTMLQPSIVGSKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDR
LTVARARKIERFLSQPFFVAEVFTGSPGKYVSLEESIKGFNMILGGQLDD
LPEQAFYLVGNIDEAISKAEKLK*
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spliced messenger RNA

>Gchil1127.t1 ID=Gchil1127.t1|Name=Gchil1127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000237_pilon:42703..44124- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAGTATTAAAAATCAAGGATGCGTAACTCAAATTATAGGACCTGT
ATTAGATATAGAATTTCCAAACGGACAGTTACCTAAAGTATTTAATGCAT
TAAAAGTTAAAGGTCCTGAAAACATAATAACTTGTGAAGTACAACAATTG
CTAGGAGATAATAGAGTGAGAGCTGTAGCTATGAGTTCTACCGAAGGCCT
AAAAAGAGGTATAGAAGTGACTGATACTGGAGCACCTATTACAGTACCAG
TTGGAATACCTACACTAGGGAGAATTTTTAATGTACTAGGCGAAACTGTA
GATAATTTAGGTAATATACAATCTGAAGATTCACTACCAATACATAGAGC
CGCTCCTTTATTTACTCAATTAGAAACTAAACCTTCTATATTTGAAACAG
GTATTAAAGTTGTTGATTTATTGGCACCATATAGAAAAGGAGGCAAAATC
GGATTATTTGGTGGGGCTGGTGTGGGTAAAACTGTACTCATTATGGAATT
AATTAATAATATAGCAAAAGCCCATGGAGGTGTTTCAGTATTTGGAGGAG
TTGGAGAAAGAACTAGAGAAGGGAATGACCTATACGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCGGATAACTTAAAAGAATCAAAAGTAGCTTTAGT
ATACGGACAAATGAATGAGCCACCTGGAGCAAGAATGCGAGTAGGCTTGA
CTGCATTAACTATGGCAGAATACTTTCGGGATATTAATAAACAGGATGTA
TTATTATTTATAGATAATATTTTTCGATTTGTACAAGCAGGCTCTGAAGT
TTCAGCTTTATTAGGGCGTATGCCATCTGCTGTTGGTTATCAACCGACAT
TAGCTACAGAGATGGGAACTTTACAAGAGCGAATTACATCTACAACAGAC
GGGTCAATTACATCAATACAGGCCGTATATGTTCCTGCAGATGACTTAAC
TGATCCAGCACCAGCCACAACATTTGCACATTTAGATGCAACAACTGTAT
TGTCAAGAAGCTTAGCAGCTAAAGGTATTTATCCCGCTGTAGATCCTTTA
GGATCTACATCAACAATGTTACAGCCTTCTATAGTAGGATCAAAGCACTA
TTCAACAGCACAGCAAATAAAATCAACTTTACAAAGATATAAGGAATTAC
AAGATATTATAGCTATTTTAGGCCTTGACGAATTATCAGAAGATGACAGA
TTAACTGTTGCTAGAGCAAGAAAAATAGAAAGATTTCTATCACAACCTTT
CTTTGTTGCAGAAGTTTTTACAGGATCTCCAGGAAAATATGTGTCATTAG
AAGAGTCTATCAAGGGCTTTAATATGATACTAGGTGGACAACTAGATGAT
TTACCTGAACAAGCTTTTTATTTAGTAGGTAATATCGACGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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protein sequence of Gchil1127.t1

>Gchil1127.t1 ID=Gchil1127.t1|Name=Gchil1127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MVSIKNQGCVTQIIGPVLDIEFPNGQLPKVFNALKVKGPENIITCEVQQL
LGDNRVRAVAMSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGETV
DNLGNIQSEDSLPIHRAAPLFTQLETKPSIFETGIKVVDLLAPYRKGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINADNLKESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDV
LLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTD
GSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPL
GSTSTMLQPSIVGSKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDR
LTVARARKIERFLSQPFFVAEVFTGSPGKYVSLEESIKGFNMILGGQLDD
LPEQAFYLVGNIDEAISKAEKLK*
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mRNA from alignment at tig00000237_pilon:42703..44124-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1127.t1 ID=Gchil1127.t1|Name=Gchil1127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000237_pilon:42703..44124- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTATTAAAAATCAAGGATGCGTAACTCAAATTATAGGACCTGT
ATTAGATATAGAATTTCCAAACGGACAGTTACCTAAAGTATTTAATGCAT
TAAAAGTTAAAGGTCCTGAAAACATAATAACTTGTGAAGTACAACAATTG
CTAGGAGATAATAGAGTGAGAGCTGTAGCTATGAGTTCTACCGAAGGCCT
AAAAAGAGGTATAGAAGTGACTGATACTGGAGCACCTATTACAGTACCAG
TTGGAATACCTACACTAGGGAGAATTTTTAATGTACTAGGCGAAACTGTA
GATAATTTAGGTAATATACAATCTGAAGATTCACTACCAATACATAGAGC
CGCTCCTTTATTTACTCAATTAGAAACTAAACCTTCTATATTTGAAACAG
GTATTAAAGTTGTTGATTTATTGGCACCATATAGAAAAGGAGGCAAAATC
GGATTATTTGGTGGGGCTGGTGTGGGTAAAACTGTACTCATTATGGAATT
AATTAATAATATAGCAAAAGCCCATGGAGGTGTTTCAGTATTTGGAGGAG
TTGGAGAAAGAACTAGAGAAGGGAATGACCTATACGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCGGATAACTTAAAAGAATCAAAAGTAGCTTTAGT
ATACGGACAAATGAATGAGCCACCTGGAGCAAGAATGCGAGTAGGCTTGA
CTGCATTAACTATGGCAGAATACTTTCGGGATATTAATAAACAGGATGTA
TTATTATTTATAGATAATATTTTTCGATTTGTACAAGCAGGCTCTGAAGT
TTCAGCTTTATTAGGGCGTATGCCATCTGCTGTTGGTTATCAACCGACAT
TAGCTACAGAGATGGGAACTTTACAAGAGCGAATTACATCTACAACAGAC
GGGTCAATTACATCAATACAGGCCGTATATGTTCCTGCAGATGACTTAAC
TGATCCAGCACCAGCCACAACATTTGCACATTTAGATGCAACAACTGTAT
TGTCAAGAAGCTTAGCAGCTAAAGGTATTTATCCCGCTGTAGATCCTTTA
GGATCTACATCAACAATGTTACAGCCTTCTATAGTAGGATCAAAGCACTA
TTCAACAGCACAGCAAATAAAATCAACTTTACAAAGATATAAGGAATTAC
AAGATATTATAGCTATTTTAGGCCTTGACGAATTATCAGAAGATGACAGA
TTAACTGTTGCTAGAGCAAGAAAAATAGAAAGATTTCTATCACAACCTTT
CTTTGTTGCAGAAGTTTTTACAGGATCTCCAGGAAAATATGTGTCATTAG
AAGAGTCTATCAAGGGCTTTAATATGATACTAGGTGGACAACTAGATGAT
TTACCTGAACAAGCTTTTTATTTAGTAGGTAATATCGACGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:42703..44124-

>Gchil1127.t1 ID=Gchil1127.t1|Name=Gchil1127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000237_pilon:42703..44124- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTATTAAAAATCAAGGATGCGTAACTCAAATTATAGGACCTGT
ATTAGATATAGAATTTCCAAACGGACAGTTACCTAAAGTATTTAATGCAT
TAAAAGTTAAAGGTCCTGAAAACATAATAACTTGTGAAGTACAACAATTG
CTAGGAGATAATAGAGTGAGAGCTGTAGCTATGAGTTCTACCGAAGGCCT
AAAAAGAGGTATAGAAGTGACTGATACTGGAGCACCTATTACAGTACCAG
TTGGAATACCTACACTAGGGAGAATTTTTAATGTACTAGGCGAAACTGTA
GATAATTTAGGTAATATACAATCTGAAGATTCACTACCAATACATAGAGC
CGCTCCTTTATTTACTCAATTAGAAACTAAACCTTCTATATTTGAAACAG
GTATTAAAGTTGTTGATTTATTGGCACCATATAGAAAAGGAGGCAAAATC
GGATTATTTGGTGGGGCTGGTGTGGGTAAAACTGTACTCATTATGGAATT
AATTAATAATATAGCAAAAGCCCATGGAGGTGTTTCAGTATTTGGAGGAG
TTGGAGAAAGAACTAGAGAAGGGAATGACCTATACGAAGAAATGAAAGAA
TCAAAAGTTATTAATGCGGATAACTTAAAAGAATCAAAAGTAGCTTTAGT
ATACGGACAAATGAATGAGCCACCTGGAGCAAGAATGCGAGTAGGCTTGA
CTGCATTAACTATGGCAGAATACTTTCGGGATATTAATAAACAGGATGTA
TTATTATTTATAGATAATATTTTTCGATTTGTACAAGCAGGCTCTGAAGT
TTCAGCTTTATTAGGGCGTATGCCATCTGCTGTTGGTTATCAACCGACAT
TAGCTACAGAGATGGGAACTTTACAAGAGCGAATTACATCTACAACAGAC
GGGTCAATTACATCAATACAGGCCGTATATGTTCCTGCAGATGACTTAAC
TGATCCAGCACCAGCCACAACATTTGCACATTTAGATGCAACAACTGTAT
TGTCAAGAAGCTTAGCAGCTAAAGGTATTTATCCCGCTGTAGATCCTTTA
GGATCTACATCAACAATGTTACAGCCTTCTATAGTAGGATCAAAGCACTA
TTCAACAGCACAGCAAATAAAATCAACTTTACAAAGATATAAGGAATTAC
AAGATATTATAGCTATTTTAGGCCTTGACGAATTATCAGAAGATGACAGA
TTAACTGTTGCTAGAGCAAGAAAAATAGAAAGATTTCTATCACAACCTTT
CTTTGTTGCAGAAGTTTTTACAGGATCTCCAGGAAAATATGTGTCATTAG
AAGAGTCTATCAAGGGCTTTAATATGATACTAGGTGGACAACTAGATGAT
TTACCTGAACAAGCTTTTTATTTAGTAGGTAATATCGACGAAGCTATAAG
TAAAGCAGAAAAGTTAAAATAA
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