Gchil11031.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11031.t1
Unique NameGchil11031.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:735271..736800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11031Gchil11031Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 735271..736800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1Gchil11031.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 735271..736800 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1.start1Gchil11031.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 735271..735273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1.CDS1Gchil11031.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 735271..735296 +
Gchil11031.t1.CDS2Gchil11031.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 735435..736800 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1.exon1Gchil11031.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 735271..735296 +
Gchil11031.t1.exon2Gchil11031.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 735435..736800 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1.intron1Gchil11031.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 735297..735434 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11031.t1.stop1Gchil11031.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 736798..736800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11031.t1 ID=Gchil11031.t1|Name=Gchil11031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=464bp
MSKSDDLINTILDGGHIRDQNGFLYDIEGHVLSSKQVQDDSVSKIKYVME
GIQTKEHTTKTDTNPSTVKEAAALARKVLAALAGNSVEQVPYADGLVCGE
KKHAPLPSNSPTTQRADVGTGRAPTFSTMQSSSGEDILYNMQTRDSMTAA
TVEEFVSASNISLAPIVDNRNVLDFVKAIDDANATFSSRGVGQTHLCDGP
CPFDSLSGIDSELSAWKANGFLGNMAQLEHQLTEKDNLALQTQHLGHFPV
EIVHASSGKNCEQDTYQTKSKRLTSWPSVTSVEDKSGTYTSFHRKNARDR
RRALARRRTLLKREAEETRRMQKLVQSLLHLPEQERQEELMKIEQRQRDN
ENRRRVEEKRRLGRQAVERCRGRAGLSRQAMETQYKVIRNENFRLKRIIV
YLLKSGVLHADELRKHRIFVAGDQTQCAPSIGNVEDKRKFVSDITEEQYE
SASTKTPRMTVEY*
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spliced messenger RNA

>Gchil11031.t1 ID=Gchil11031.t1|Name=Gchil11031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000021_pilon:735271..736800+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAATCCGACGACCTCATTAATACAATACTTGATGGCGGTCATAT
ACGCGATCAAAATGGTTTTCTGTACGACATCGAAGGCCATGTACTCAGTT
CAAAGCAGGTGCAGGATGATTCAGTTTCCAAGATCAAGTACGTTATGGAA
GGCATTCAGACAAAAGAACACACGACTAAAACCGATACGAACCCTAGTAC
TGTTAAGGAAGCAGCTGCCCTCGCCAGGAAGGTTCTTGCAGCCCTTGCTG
GGAACAGTGTGGAGCAAGTCCCATATGCTGATGGACTTGTATGCGGAGAG
AAAAAACACGCCCCTCTCCCGAGCAATAGCCCTACTACACAGAGAGCTGA
TGTTGGTACAGGAAGAGCTCCAACTTTTTCAACCATGCAGTCTAGTTCTG
GCGAAGACATATTGTATAATATGCAGACAAGAGATTCGATGACAGCGGCA
ACGGTTGAAGAGTTTGTGAGCGCCTCTAATATATCATTGGCACCCATAGT
GGATAATCGCAATGTCCTGGACTTTGTGAAAGCTATTGATGACGCCAATG
CAACCTTCAGCTCTCGTGGTGTGGGGCAAACCCATTTGTGTGACGGACCA
TGTCCGTTTGACAGCTTGAGCGGCATAGATTCCGAATTATCTGCGTGGAA
GGCGAACGGCTTTCTTGGAAATATGGCTCAACTGGAGCACCAGTTGACAG
AAAAGGACAATTTAGCGTTACAGACACAGCATCTTGGGCACTTTCCCGTT
GAAATTGTACATGCTAGTTCGGGGAAAAACTGCGAGCAAGATACATACCA
AACAAAAAGTAAGAGGTTGACAAGTTGGCCTTCTGTTACAAGCGTTGAGG
ATAAGTCTGGTACATACACTTCTTTCCACCGGAAGAACGCTCGAGATCGA
CGGCGCGCGTTGGCACGTCGACGCACTTTGTTGAAACGAGAAGCAGAGGA
GACCAGGCGCATGCAAAAACTAGTGCAATCCCTGCTACATCTTCCGGAAC
AAGAGAGACAAGAAGAACTGATGAAGATTGAGCAGCGACAACGTGATAAT
GAAAATCGAAGAAGGGTGGAAGAAAAGCGCCGTCTCGGTCGGCAAGCGGT
GGAACGTTGCCGTGGGAGAGCAGGTCTAAGCCGGCAAGCAATGGAAACAC
AATATAAGGTCATCCGAAATGAGAACTTCAGGCTTAAGCGAATAATTGTG
TATCTATTGAAATCTGGAGTTCTCCATGCGGACGAGCTTCGAAAGCACAG
AATTTTTGTCGCAGGAGACCAAACCCAGTGTGCGCCATCAATAGGTAATG
TAGAGGACAAACGCAAGTTTGTGTCCGATATCACCGAAGAGCAATACGAA
AGTGCATCAACGAAGACCCCTCGAATGACTGTAGAGTATTGA
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protein sequence of Gchil11031.t1

>Gchil11031.t1 ID=Gchil11031.t1|Name=Gchil11031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=464bp
MSKSDDLINTILDGGHIRDQNGFLYDIEGHVLSSKQVQDDSVSKIKYVME
GIQTKEHTTKTDTNPSTVKEAAALARKVLAALAGNSVEQVPYADGLVCGE
KKHAPLPSNSPTTQRADVGTGRAPTFSTMQSSSGEDILYNMQTRDSMTAA
TVEEFVSASNISLAPIVDNRNVLDFVKAIDDANATFSSRGVGQTHLCDGP
CPFDSLSGIDSELSAWKANGFLGNMAQLEHQLTEKDNLALQTQHLGHFPV
EIVHASSGKNCEQDTYQTKSKRLTSWPSVTSVEDKSGTYTSFHRKNARDR
RRALARRRTLLKREAEETRRMQKLVQSLLHLPEQERQEELMKIEQRQRDN
ENRRRVEEKRRLGRQAVERCRGRAGLSRQAMETQYKVIRNENFRLKRIIV
YLLKSGVLHADELRKHRIFVAGDQTQCAPSIGNVEDKRKFVSDITEEQYE
SASTKTPRMTVEY*
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mRNA from alignment at tig00000021_pilon:735271..736800+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11031.t1 ID=Gchil11031.t1|Name=Gchil11031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000021_pilon:735271..736800+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAAATCCGACGACCTCATTAAGTATGTTTCGATACATTTGTAATG
TATATGGCAGAGTACACAAACAAGAAGTGCAACGAGTGATTCAATACGAT
TTGTAGTGCTGACCCGCTTTTCTTCTCTTTCTGCAAACTTCGGCCGCCTC
TCGCGAATTCATAGTACAATACTTGATGGCGGTCATATACGCGATCAAAA
TGGTTTTCTGTACGACATCGAAGGCCATGTACTCAGTTCAAAGCAGGTGC
AGGATGATTCAGTTTCCAAGATCAAGTACGTTATGGAAGGCATTCAGACA
AAAGAACACACGACTAAAACCGATACGAACCCTAGTACTGTTAAGGAAGC
AGCTGCCCTCGCCAGGAAGGTTCTTGCAGCCCTTGCTGGGAACAGTGTGG
AGCAAGTCCCATATGCTGATGGACTTGTATGCGGAGAGAAAAAACACGCC
CCTCTCCCGAGCAATAGCCCTACTACACAGAGAGCTGATGTTGGTACAGG
AAGAGCTCCAACTTTTTCAACCATGCAGTCTAGTTCTGGCGAAGACATAT
TGTATAATATGCAGACAAGAGATTCGATGACAGCGGCAACGGTTGAAGAG
TTTGTGAGCGCCTCTAATATATCATTGGCACCCATAGTGGATAATCGCAA
TGTCCTGGACTTTGTGAAAGCTATTGATGACGCCAATGCAACCTTCAGCT
CTCGTGGTGTGGGGCAAACCCATTTGTGTGACGGACCATGTCCGTTTGAC
AGCTTGAGCGGCATAGATTCCGAATTATCTGCGTGGAAGGCGAACGGCTT
TCTTGGAAATATGGCTCAACTGGAGCACCAGTTGACAGAAAAGGACAATT
TAGCGTTACAGACACAGCATCTTGGGCACTTTCCCGTTGAAATTGTACAT
GCTAGTTCGGGGAAAAACTGCGAGCAAGATACATACCAAACAAAAAGTAA
GAGGTTGACAAGTTGGCCTTCTGTTACAAGCGTTGAGGATAAGTCTGGTA
CATACACTTCTTTCCACCGGAAGAACGCTCGAGATCGACGGCGCGCGTTG
GCACGTCGACGCACTTTGTTGAAACGAGAAGCAGAGGAGACCAGGCGCAT
GCAAAAACTAGTGCAATCCCTGCTACATCTTCCGGAACAAGAGAGACAAG
AAGAACTGATGAAGATTGAGCAGCGACAACGTGATAATGAAAATCGAAGA
AGGGTGGAAGAAAAGCGCCGTCTCGGTCGGCAAGCGGTGGAACGTTGCCG
TGGGAGAGCAGGTCTAAGCCGGCAAGCAATGGAAACACAATATAAGGTCA
TCCGAAATGAGAACTTCAGGCTTAAGCGAATAATTGTGTATCTATTGAAA
TCTGGAGTTCTCCATGCGGACGAGCTTCGAAAGCACAGAATTTTTGTCGC
AGGAGACCAAACCCAGTGTGCGCCATCAATAGGTAATGTAGAGGACAAAC
GCAAGTTTGTGTCCGATATCACCGAAGAGCAATACGAAAGTGCATCAACG
AAGACCCCTCGAATGACTGTAGAGTATTGA
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Coding sequence (CDS) from alignment at tig00000021_pilon:735271..736800+

>Gchil11031.t1 ID=Gchil11031.t1|Name=Gchil11031.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000021_pilon:735271..736800+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAAATCCGACGACCTCATTAATACAATACTTGATGGCGGTCATAT
ACGCGATCAAAATGGTTTTCTGTACGACATCGAAGGCCATGTACTCAGTT
CAAAGCAGGTGCAGGATGATTCAGTTTCCAAGATCAAGTACGTTATGGAA
GGCATTCAGACAAAAGAACACACGACTAAAACCGATACGAACCCTAGTAC
TGTTAAGGAAGCAGCTGCCCTCGCCAGGAAGGTTCTTGCAGCCCTTGCTG
GGAACAGTGTGGAGCAAGTCCCATATGCTGATGGACTTGTATGCGGAGAG
AAAAAACACGCCCCTCTCCCGAGCAATAGCCCTACTACACAGAGAGCTGA
TGTTGGTACAGGAAGAGCTCCAACTTTTTCAACCATGCAGTCTAGTTCTG
GCGAAGACATATTGTATAATATGCAGACAAGAGATTCGATGACAGCGGCA
ACGGTTGAAGAGTTTGTGAGCGCCTCTAATATATCATTGGCACCCATAGT
GGATAATCGCAATGTCCTGGACTTTGTGAAAGCTATTGATGACGCCAATG
CAACCTTCAGCTCTCGTGGTGTGGGGCAAACCCATTTGTGTGACGGACCA
TGTCCGTTTGACAGCTTGAGCGGCATAGATTCCGAATTATCTGCGTGGAA
GGCGAACGGCTTTCTTGGAAATATGGCTCAACTGGAGCACCAGTTGACAG
AAAAGGACAATTTAGCGTTACAGACACAGCATCTTGGGCACTTTCCCGTT
GAAATTGTACATGCTAGTTCGGGGAAAAACTGCGAGCAAGATACATACCA
AACAAAAAGTAAGAGGTTGACAAGTTGGCCTTCTGTTACAAGCGTTGAGG
ATAAGTCTGGTACATACACTTCTTTCCACCGGAAGAACGCTCGAGATCGA
CGGCGCGCGTTGGCACGTCGACGCACTTTGTTGAAACGAGAAGCAGAGGA
GACCAGGCGCATGCAAAAACTAGTGCAATCCCTGCTACATCTTCCGGAAC
AAGAGAGACAAGAAGAACTGATGAAGATTGAGCAGCGACAACGTGATAAT
GAAAATCGAAGAAGGGTGGAAGAAAAGCGCCGTCTCGGTCGGCAAGCGGT
GGAACGTTGCCGTGGGAGAGCAGGTCTAAGCCGGCAAGCAATGGAAACAC
AATATAAGGTCATCCGAAATGAGAACTTCAGGCTTAAGCGAATAATTGTG
TATCTATTGAAATCTGGAGTTCTCCATGCGGACGAGCTTCGAAAGCACAG
AATTTTTGTCGCAGGAGACCAAACCCAGTGTGCGCCATCAATAGGTAATG
TAGAGGACAAACGCAAGTTTGTGTCCGATATCACCGAAGAGCAATACGAA
AGTGCATCAACGAAGACCCCTCGAATGACTGTAGAGTATTGA
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