Gchil11025.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11025.t1
Unique NameGchil11025.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:716374..717348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703842.1
PFAMsGlyco_transf_34
Max annot lvl2759|Eukaryota
Evalue7.19e-111
EggNOG OGs2EAHV@1|root,2SGRN@2759|Eukaryota
Descriptiongalactosyl transferase GMA12/MNN10 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11025Gchil11025Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 716374..717348 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11025.t1.stop1Gchil11025.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 716374..716376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11025.t1.CDS1Gchil11025.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 716374..717348 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11025.t1.exon1Gchil11025.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 716374..717348 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11025.t1.start1Gchil11025.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 717346..717348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11025.t1Gchil11025.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 716374..717348 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11025.t1 ID=Gchil11025.t1|Name=Gchil11025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=325bp
MVNDVWFFRELSEITLRNKRRYATRHAFEIVVHTPYETTGLFAPADCTEP
SVVRRDAHANCFKPSTQFALDQRAPTFGKIKLALDACVARPHYWLLWTDA
DAMIVNQTVSLLDIVDDAYDIIVSHDWFMINAGVMLFRCSPWNLQFLKRV
YDARQFDNASALDQSAFNDFFTKDAQVKPHVKHLPKHRINVYTEEYRPGD
FIIHFAGKLYEATPWGITDIARQFDVLSRVPDQHKISHFFNTRYLLNYFS
GTCVMGPPDKDPNRDCDPNDERRLKLPEPLIAMSYPNRYRQLEYRNPKLK
HWTDPYDIPGASDIKIRRTTQASS*
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spliced messenger RNA

>Gchil11025.t1 ID=Gchil11025.t1|Name=Gchil11025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000021_pilon:716374..717348- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAACGACGTCTGGTTCTTCCGTGAACTCTCCGAGATCACCCTACG
CAACAAGCGTCGCTACGCCACGCGCCACGCCTTTGAAATCGTTGTGCACA
CCCCTTACGAAACCACCGGTCTTTTTGCCCCGGCCGATTGCACCGAGCCC
TCCGTCGTCCGTCGCGATGCCCACGCAAATTGCTTCAAGCCTTCCACTCA
GTTTGCGCTTGATCAGCGCGCTCCCACCTTTGGAAAGATCAAGCTTGCCC
TCGATGCCTGCGTCGCCCGTCCGCACTATTGGCTGCTGTGGACCGATGCC
GATGCCATGATCGTCAACCAAACCGTCTCGCTGCTCGACATTGTCGATGA
CGCCTACGACATCATCGTCTCCCACGACTGGTTCATGATCAACGCCGGCG
TCATGCTCTTCCGCTGCTCGCCGTGGAACCTCCAATTCTTGAAGCGCGTC
TATGACGCCCGCCAGTTCGACAACGCTAGCGCCCTCGATCAAAGCGCCTT
CAACGATTTTTTTACAAAAGATGCCCAAGTCAAGCCCCACGTCAAACACC
TCCCCAAGCACCGCATCAACGTCTACACCGAGGAGTATCGCCCTGGTGAC
TTCATCATTCATTTTGCAGGCAAGCTTTACGAGGCCACTCCCTGGGGAAT
CACAGACATCGCCCGCCAATTTGACGTACTTTCCCGAGTGCCCGATCAGC
ACAAAATTAGCCACTTCTTCAACACCCGCTACTTGCTCAACTACTTTTCC
GGCACCTGCGTCATGGGTCCGCCCGACAAGGATCCCAACCGTGATTGCGA
CCCCAACGATGAGCGACGACTCAAGCTCCCCGAGCCACTAATTGCAATGA
GCTACCCTAACCGTTACCGCCAACTAGAGTACCGCAACCCCAAACTCAAG
CATTGGACAGACCCGTACGACATTCCGGGCGCTTCCGACATCAAAATTCG
GCGCACAACTCAAGCCTCTTCATAG
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protein sequence of Gchil11025.t1

>Gchil11025.t1 ID=Gchil11025.t1|Name=Gchil11025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=325bp
MVNDVWFFRELSEITLRNKRRYATRHAFEIVVHTPYETTGLFAPADCTEP
SVVRRDAHANCFKPSTQFALDQRAPTFGKIKLALDACVARPHYWLLWTDA
DAMIVNQTVSLLDIVDDAYDIIVSHDWFMINAGVMLFRCSPWNLQFLKRV
YDARQFDNASALDQSAFNDFFTKDAQVKPHVKHLPKHRINVYTEEYRPGD
FIIHFAGKLYEATPWGITDIARQFDVLSRVPDQHKISHFFNTRYLLNYFS
GTCVMGPPDKDPNRDCDPNDERRLKLPEPLIAMSYPNRYRQLEYRNPKLK
HWTDPYDIPGASDIKIRRTTQASS*
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mRNA from alignment at tig00000021_pilon:716374..717348-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11025.t1 ID=Gchil11025.t1|Name=Gchil11025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000021_pilon:716374..717348- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAACGACGTCTGGTTCTTCCGTGAACTCTCCGAGATCACCCTACG
CAACAAGCGTCGCTACGCCACGCGCCACGCCTTTGAAATCGTTGTGCACA
CCCCTTACGAAACCACCGGTCTTTTTGCCCCGGCCGATTGCACCGAGCCC
TCCGTCGTCCGTCGCGATGCCCACGCAAATTGCTTCAAGCCTTCCACTCA
GTTTGCGCTTGATCAGCGCGCTCCCACCTTTGGAAAGATCAAGCTTGCCC
TCGATGCCTGCGTCGCCCGTCCGCACTATTGGCTGCTGTGGACCGATGCC
GATGCCATGATCGTCAACCAAACCGTCTCGCTGCTCGACATTGTCGATGA
CGCCTACGACATCATCGTCTCCCACGACTGGTTCATGATCAACGCCGGCG
TCATGCTCTTCCGCTGCTCGCCGTGGAACCTCCAATTCTTGAAGCGCGTC
TATGACGCCCGCCAGTTCGACAACGCTAGCGCCCTCGATCAAAGCGCCTT
CAACGATTTTTTTACAAAAGATGCCCAAGTCAAGCCCCACGTCAAACACC
TCCCCAAGCACCGCATCAACGTCTACACCGAGGAGTATCGCCCTGGTGAC
TTCATCATTCATTTTGCAGGCAAGCTTTACGAGGCCACTCCCTGGGGAAT
CACAGACATCGCCCGCCAATTTGACGTACTTTCCCGAGTGCCCGATCAGC
ACAAAATTAGCCACTTCTTCAACACCCGCTACTTGCTCAACTACTTTTCC
GGCACCTGCGTCATGGGTCCGCCCGACAAGGATCCCAACCGTGATTGCGA
CCCCAACGATGAGCGACGACTCAAGCTCCCCGAGCCACTAATTGCAATGA
GCTACCCTAACCGTTACCGCCAACTAGAGTACCGCAACCCCAAACTCAAG
CATTGGACAGACCCGTACGACATTCCGGGCGCTTCCGACATCAAAATTCG
GCGCACAACTCAAGCCTCTTCATAG
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Coding sequence (CDS) from alignment at tig00000021_pilon:716374..717348-

>Gchil11025.t1 ID=Gchil11025.t1|Name=Gchil11025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00000021_pilon:716374..717348- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAACGACGTCTGGTTCTTCCGTGAACTCTCCGAGATCACCCTACG
CAACAAGCGTCGCTACGCCACGCGCCACGCCTTTGAAATCGTTGTGCACA
CCCCTTACGAAACCACCGGTCTTTTTGCCCCGGCCGATTGCACCGAGCCC
TCCGTCGTCCGTCGCGATGCCCACGCAAATTGCTTCAAGCCTTCCACTCA
GTTTGCGCTTGATCAGCGCGCTCCCACCTTTGGAAAGATCAAGCTTGCCC
TCGATGCCTGCGTCGCCCGTCCGCACTATTGGCTGCTGTGGACCGATGCC
GATGCCATGATCGTCAACCAAACCGTCTCGCTGCTCGACATTGTCGATGA
CGCCTACGACATCATCGTCTCCCACGACTGGTTCATGATCAACGCCGGCG
TCATGCTCTTCCGCTGCTCGCCGTGGAACCTCCAATTCTTGAAGCGCGTC
TATGACGCCCGCCAGTTCGACAACGCTAGCGCCCTCGATCAAAGCGCCTT
CAACGATTTTTTTACAAAAGATGCCCAAGTCAAGCCCCACGTCAAACACC
TCCCCAAGCACCGCATCAACGTCTACACCGAGGAGTATCGCCCTGGTGAC
TTCATCATTCATTTTGCAGGCAAGCTTTACGAGGCCACTCCCTGGGGAAT
CACAGACATCGCCCGCCAATTTGACGTACTTTCCCGAGTGCCCGATCAGC
ACAAAATTAGCCACTTCTTCAACACCCGCTACTTGCTCAACTACTTTTCC
GGCACCTGCGTCATGGGTCCGCCCGACAAGGATCCCAACCGTGATTGCGA
CCCCAACGATGAGCGACGACTCAAGCTCCCCGAGCCACTAATTGCAATGA
GCTACCCTAACCGTTACCGCCAACTAGAGTACCGCAACCCCAAACTCAAG
CATTGGACAGACCCGTACGACATTCCGGGCGCTTCCGACATCAAAATTCG
GCGCACAACTCAAGCCTCTTCATAG
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