Gchil11024.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11024.t1
Unique Name	Gchil11024.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	592

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:714493..716268 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705109.1
Preferred name	DDX42
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12835
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0010941,GO:0015030,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0033036,GO:0034641,GO:0042623,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051179,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Evalue	1.68e-95
EggNOG OGs	COG0513@1\|root,KOG0339@2759\|Eukaryota
EC	3.6.4.13
Description	RNA secondary structure unwinding
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11024	Gchil11024	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 714493..716268 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11024.t1.start1	Gchil11024.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 714493..714495 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11024.t1.CDS1	Gchil11024.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 714493..716268 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11024.t1.exon1	Gchil11024.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 714493..716268 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11024.t1.stop1	Gchil11024.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 716266..716268 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11024.t1	Gchil11024.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 714493..716268 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:714493..716268+
coding sequence from alignment at tig00000021_pilon:714493..716268+

mRNA sequence

>Gchil11024.t1 ID=Gchil11024.t1|Name=Gchil11024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=592bp
MKRARPAPSMFGNDSDSDDTDRRPLSRFRPPKTIDAAPTSDTYELVVEKE
DVGNKSHHEDTLDAFMSSLDHVQTVEPKPLKEVNHTERDSVGDRDDDGDD
DDEHSARGIDANPRPLSNDNLPEAGKDHARDLKLQPVDYSNSQLLRIVWS
RYKPLPRLHLSQVELGERLQDMGAMVHNGSFLPLISFDDLALEVPKHTLC
ALLNAFASPTPIQTLAIPAAFAGRDITGVAKTGSGKTMAYGIPLLSHVAR
QPGCSARGAGPVALVLSPTRELAMQIAGVLRRFDARVGVLCVVGGHAKYE
QFKRIRDSGAEVIVATPGRLIDMLKMRACGMARCSFVVVDEADRMFDLGF
TDQVRALLSQVRPDAQRLLFSATFPKVVRGFAKEILKDAVQVVIRGTGGD
SMVNENVSEMYRSFSSDKERKAWLLEAVPKMREEGLVIVFCATRGDAAAV
ANSIRGQGIAAACIHGETDAADREGLLKMFRDGELSLLVTTDLSARGLDI
EDVRNVVNYGSAKSWEWHVHRVGRTGRAGRKGTAWTLVMKGNKTDSEFLC
DAMKAYRRRGGHLPDGLDDIVRGGWELSERPRGRGRKRRGR*

spliced messenger RNA

>Gchil11024.t1 ID=Gchil11024.t1|Name=Gchil11024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000021_pilon:714493..716268+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGCGCGACCGGCGCCGTCCATGTTTGGGAATGATTCTGACTC
TGATGATACCGATCGTAGACCTTTATCCCGATTCCGACCGCCGAAAACAA
TCGACGCAGCCCCTACAAGCGACACTTACGAACTTGTCGTGGAAAAGGAA
GATGTTGGGAATAAATCCCATCATGAAGATACTCTTGATGCGTTTATGAG
CAGCTTGGATCATGTCCAAACCGTTGAACCGAAGCCACTGAAGGAAGTCA
ACCACACTGAAAGAgatagcgttggcgatagagatgatgatggtgatgat
gatgatgaACACAGCGCACGCGGAATTGATGCAAATCCTCGTCCCCTTTC
GAACGACAATCTCCCTGAAGCTGGGAAAGATCATGCAAGAGACTTGAAAC
TACAGCCAGTTGATTATTCAAACAGTCAACTTTTGCGAATTGTATGGTCA
AGGTACAAACCTCTGCCACGTCTGCACCTCTCCCAAGTCGAACTTGGGGA
ACGATTGCAAGACATGGGGGCCATGGTGCACAATGGAAGCTTTTTGCCGT
TGATTTCGTTTGACGATCTTGCCCTTGAAGTTCCTAAGCATACCTTGTGC
GCATTGCTCAATGCATTTGCTTCACCGACGCCCATTCAGACGTTGGCGAT
TCCTGCTGCGTTTGCTGGACGCGACATTACCGGCGTTGCGAAAACAGGCA
GCGGGAAGACGATGGCTTATGGCATCCCGCTGTTGTCGCATGTTGCTCGT
CAGCCCGGCTGCTCGGCACGGGGCGCCGGGCCCGTGGCGCTGGTTTTGTC
GCCGACAAGAGAACTCGCCATGCAAATAGCCGGGGTGCTTCGGCGATTCG
ATGCGCGGGTTGGCGTGCTTTGCGTGGTCGGCGGTCACGCCAAGTACGAG
CAGTTCAAGCGAATCCGCGATTCTGGTGCCGAGGTGATTGTTGCGACTCC
CGGCCGCCTGATTGACATGCTCAAAATGCGTGCGTGCGGCATGGCGAGGT
GCTCGTTTGTTGTAGTGGACGAAGCGGATCGGATGTTTGACCTTGGGTTT
ACGGATCAGGTGCGCGCCCTTTTGTCACAGGTGCGACCGGACGCGCAGCG
TTTATTGTTTTCCGCAACGTTTCCGAAAGTTGTGAGAGGCTTTGCTAAGG
AGATTTTGAAGGATGCGGTGCAGGTTGTGATTCGGGGCACTGGCGGCGAT
TCGATGGTGAACGAGAATGTGAGCGAGATGTATCGCTCGTTTTCGAGTGA
CAAGGAGAGAAAAGCATGGCTGCTGGAAGCTGTTCCAAAGATGCGCGAGG
AGGGGCTGGTGATTGTGTTTTGCGCAACGAGAGGAGACGCAGCGGCGGTT
GCAAACTCGATACGCGGCCAAGGCATTGCTGCTGCTTGTATTCACGGGGA
GACAGATGCAGCGGACCGAGAGGGTTTGTTGAAGATGTTTCGCGACGGTG
AGTTGTCGCTTTTGGTGACGACGGACTTGTCTGCGCGAGGACTGGACATT
GAGGATGTGAGAAATGTTGTGAATTACGGAAGCGCCAAGAGTTGGGAATG
GCATGTGCATCGCGTGGGACGAACGGGGCGTGCGGGACGGAAGGGTACTG
CTTGGACGCTTGTGATGAAGGGCAATAAGACGGACAGCGAGTTTCTGTGC
GATGCTATGAAGGCGTATCGGCGCAGAGGTGGGCACTTGCCTGATGGGCT
GGACGACATTGTGCGGGGCGGGTGGGAATTGAGTGAGCGCCCGCGCGGAC
GCGGAAGAAAGAGAAGGGGGCGATGA

protein sequence of Gchil11024.t1

>Gchil11024.t1 ID=Gchil11024.t1|Name=Gchil11024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=592bp
MKRARPAPSMFGNDSDSDDTDRRPLSRFRPPKTIDAAPTSDTYELVVEKE
DVGNKSHHEDTLDAFMSSLDHVQTVEPKPLKEVNHTERDSVGDRDDDGDD
DDEHSARGIDANPRPLSNDNLPEAGKDHARDLKLQPVDYSNSQLLRIVWS
RYKPLPRLHLSQVELGERLQDMGAMVHNGSFLPLISFDDLALEVPKHTLC
ALLNAFASPTPIQTLAIPAAFAGRDITGVAKTGSGKTMAYGIPLLSHVAR
QPGCSARGAGPVALVLSPTRELAMQIAGVLRRFDARVGVLCVVGGHAKYE
QFKRIRDSGAEVIVATPGRLIDMLKMRACGMARCSFVVVDEADRMFDLGF
TDQVRALLSQVRPDAQRLLFSATFPKVVRGFAKEILKDAVQVVIRGTGGD
SMVNENVSEMYRSFSSDKERKAWLLEAVPKMREEGLVIVFCATRGDAAAV
ANSIRGQGIAAACIHGETDAADREGLLKMFRDGELSLLVTTDLSARGLDI
EDVRNVVNYGSAKSWEWHVHRVGRTGRAGRKGTAWTLVMKGNKTDSEFLC
DAMKAYRRRGGHLPDGLDDIVRGGWELSERPRGRGRKRRGR*

mRNA from alignment at tig00000021_pilon:714493..716268+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11024.t1 ID=Gchil11024.t1|Name=Gchil11024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at tig00000021_pilon:714493..716268+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGGGCGCGACCGGCGCCGTCCATGTTTGGGAATGATTCTGACTC
TGATGATACCGATCGTAGACCTTTATCCCGATTCCGACCGCCGAAAACAA
TCGACGCAGCCCCTACAAGCGACACTTACGAACTTGTCGTGGAAAAGGAA
GATGTTGGGAATAAATCCCATCATGAAGATACTCTTGATGCGTTTATGAG
CAGCTTGGATCATGTCCAAACCGTTGAACCGAAGCCACTGAAGGAAGTCA
ACCACACTGAAAGAgatagcgttggcgatagagatgatgatggtgatgat
gatgatgaACACAGCGCACGCGGAATTGATGCAAATCCTCGTCCCCTTTC
GAACGACAATCTCCCTGAAGCTGGGAAAGATCATGCAAGAGACTTGAAAC
TACAGCCAGTTGATTATTCAAACAGTCAACTTTTGCGAATTGTATGGTCA
AGGTACAAACCTCTGCCACGTCTGCACCTCTCCCAAGTCGAACTTGGGGA
ACGATTGCAAGACATGGGGGCCATGGTGCACAATGGAAGCTTTTTGCCGT
TGATTTCGTTTGACGATCTTGCCCTTGAAGTTCCTAAGCATACCTTGTGC
GCATTGCTCAATGCATTTGCTTCACCGACGCCCATTCAGACGTTGGCGAT
TCCTGCTGCGTTTGCTGGACGCGACATTACCGGCGTTGCGAAAACAGGCA
GCGGGAAGACGATGGCTTATGGCATCCCGCTGTTGTCGCATGTTGCTCGT
CAGCCCGGCTGCTCGGCACGGGGCGCCGGGCCCGTGGCGCTGGTTTTGTC
GCCGACAAGAGAACTCGCCATGCAAATAGCCGGGGTGCTTCGGCGATTCG
ATGCGCGGGTTGGCGTGCTTTGCGTGGTCGGCGGTCACGCCAAGTACGAG
CAGTTCAAGCGAATCCGCGATTCTGGTGCCGAGGTGATTGTTGCGACTCC
CGGCCGCCTGATTGACATGCTCAAAATGCGTGCGTGCGGCATGGCGAGGT
GCTCGTTTGTTGTAGTGGACGAAGCGGATCGGATGTTTGACCTTGGGTTT
ACGGATCAGGTGCGCGCCCTTTTGTCACAGGTGCGACCGGACGCGCAGCG
TTTATTGTTTTCCGCAACGTTTCCGAAAGTTGTGAGAGGCTTTGCTAAGG
AGATTTTGAAGGATGCGGTGCAGGTTGTGATTCGGGGCACTGGCGGCGAT
TCGATGGTGAACGAGAATGTGAGCGAGATGTATCGCTCGTTTTCGAGTGA
CAAGGAGAGAAAAGCATGGCTGCTGGAAGCTGTTCCAAAGATGCGCGAGG
AGGGGCTGGTGATTGTGTTTTGCGCAACGAGAGGAGACGCAGCGGCGGTT
GCAAACTCGATACGCGGCCAAGGCATTGCTGCTGCTTGTATTCACGGGGA
GACAGATGCAGCGGACCGAGAGGGTTTGTTGAAGATGTTTCGCGACGGTG
AGTTGTCGCTTTTGGTGACGACGGACTTGTCTGCGCGAGGACTGGACATT
GAGGATGTGAGAAATGTTGTGAATTACGGAAGCGCCAAGAGTTGGGAATG
GCATGTGCATCGCGTGGGACGAACGGGGCGTGCGGGACGGAAGGGTACTG
CTTGGACGCTTGTGATGAAGGGCAATAAGACGGACAGCGAGTTTCTGTGC
GATGCTATGAAGGCGTATCGGCGCAGAGGTGGGCACTTGCCTGATGGGCT
GGACGACATTGTGCGGGGCGGGTGGGAATTGAGTGAGCGCCCGCGCGGAC
GCGGAAGAAAGAGAAGGGGGCGATGA

Coding sequence (CDS) from alignment at tig00000021_pilon:714493..716268+

>Gchil11024.t1 ID=Gchil11024.t1|Name=Gchil11024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1776bp|location=Sequence derived from alignment at tig00000021_pilon:714493..716268+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGGGCGCGACCGGCGCCGTCCATGTTTGGGAATGATTCTGACTC
TGATGATACCGATCGTAGACCTTTATCCCGATTCCGACCGCCGAAAACAA
TCGACGCAGCCCCTACAAGCGACACTTACGAACTTGTCGTGGAAAAGGAA
GATGTTGGGAATAAATCCCATCATGAAGATACTCTTGATGCGTTTATGAG
CAGCTTGGATCATGTCCAAACCGTTGAACCGAAGCCACTGAAGGAAGTCA
ACCACACTGAAAGAgatagcgttggcgatagagatgatgatggtgatgat
gatgatgaACACAGCGCACGCGGAATTGATGCAAATCCTCGTCCCCTTTC
GAACGACAATCTCCCTGAAGCTGGGAAAGATCATGCAAGAGACTTGAAAC
TACAGCCAGTTGATTATTCAAACAGTCAACTTTTGCGAATTGTATGGTCA
AGGTACAAACCTCTGCCACGTCTGCACCTCTCCCAAGTCGAACTTGGGGA
ACGATTGCAAGACATGGGGGCCATGGTGCACAATGGAAGCTTTTTGCCGT
TGATTTCGTTTGACGATCTTGCCCTTGAAGTTCCTAAGCATACCTTGTGC
GCATTGCTCAATGCATTTGCTTCACCGACGCCCATTCAGACGTTGGCGAT
TCCTGCTGCGTTTGCTGGACGCGACATTACCGGCGTTGCGAAAACAGGCA
GCGGGAAGACGATGGCTTATGGCATCCCGCTGTTGTCGCATGTTGCTCGT
CAGCCCGGCTGCTCGGCACGGGGCGCCGGGCCCGTGGCGCTGGTTTTGTC
GCCGACAAGAGAACTCGCCATGCAAATAGCCGGGGTGCTTCGGCGATTCG
ATGCGCGGGTTGGCGTGCTTTGCGTGGTCGGCGGTCACGCCAAGTACGAG
CAGTTCAAGCGAATCCGCGATTCTGGTGCCGAGGTGATTGTTGCGACTCC
CGGCCGCCTGATTGACATGCTCAAAATGCGTGCGTGCGGCATGGCGAGGT
GCTCGTTTGTTGTAGTGGACGAAGCGGATCGGATGTTTGACCTTGGGTTT
ACGGATCAGGTGCGCGCCCTTTTGTCACAGGTGCGACCGGACGCGCAGCG
TTTATTGTTTTCCGCAACGTTTCCGAAAGTTGTGAGAGGCTTTGCTAAGG
AGATTTTGAAGGATGCGGTGCAGGTTGTGATTCGGGGCACTGGCGGCGAT
TCGATGGTGAACGAGAATGTGAGCGAGATGTATCGCTCGTTTTCGAGTGA
CAAGGAGAGAAAAGCATGGCTGCTGGAAGCTGTTCCAAAGATGCGCGAGG
AGGGGCTGGTGATTGTGTTTTGCGCAACGAGAGGAGACGCAGCGGCGGTT
GCAAACTCGATACGCGGCCAAGGCATTGCTGCTGCTTGTATTCACGGGGA
GACAGATGCAGCGGACCGAGAGGGTTTGTTGAAGATGTTTCGCGACGGTG
AGTTGTCGCTTTTGGTGACGACGGACTTGTCTGCGCGAGGACTGGACATT
GAGGATGTGAGAAATGTTGTGAATTACGGAAGCGCCAAGAGTTGGGAATG
GCATGTGCATCGCGTGGGACGAACGGGGCGTGCGGGACGGAAGGGTACTG
CTTGGACGCTTGTGATGAAGGGCAATAAGACGGACAGCGAGTTTCTGTGC
GATGCTATGAAGGCGTATCGGCGCAGAGGTGGGCACTTGCCTGATGGGCT
GGACGACATTGTGCGGGGCGGGTGGGAATTGAGTGAGCGCCCGCGCGGAC
GCGGAAGAAAGAGAAGGGGGCGATGA