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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 529818.AMSG_02512T0 |
| PFAMs | Patched |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.57e-35 |
| EggNOG OGs | KOG3664@1|root,KOG3664@2759|Eukaryota |
| Description | patched ligand maturation |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil11017.t1 ID=Gchil11017.t1|Name=Gchil11017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=791bp MATSDGSAAAVAKPCLWTRLSVNHTKKTCLLAYAFPFLSIAIIALSRQFA FDDPNGVDFFIRNDELTRLFDAREAAREQYAFGASASVVERATERPEFHL NVLFRGKLPPQFEKLPSNADEKQTASNVLTRNNLALLKQIEDDILGTAEY PSYCYFDETAKDCAGRNLACAHPLSLTNSPFLYGIWEEGRLCGRRNTSEP PAEERFASFLNSLVDTDSEGNAVVNAAYKEFVGKEFSRTESGSERGSGSS NHSSSSNMPFYFKFLPGKWQKKNDTAGLHYSFLERFFGGIWTKLIYRGRY ALVVLALVLAGLGVYGATKLEPIQETEQFLPSDHPLRVLQTTLADGFGEE RRAVTLQARVTWGISDIDRSGTSRFQPESIGRAVLDERFDLRRKEVQEQV RRACGWFVRREGLVTQQAAMEEAVDCWVSDYEQWRKQELKKDGLESFETH AQLAEELKRFGAFEAADNSRPYERYIKSQAIGFSAQQERVVFTEIRFVTG KKPALTAKFMRPIYNEWKAATEGLNAIGPEASGDRGAFVTSGVAGNVEGG INVWSWMRSQETLVISMFSGVGIMVGVALVTLTVCTMNWAVSLIATVCIG GLVSMLLGVMHAVGWELGTTETIAVVISIGYGFDGVAHMATAYVECGKEG RVERTRHALLTLGVSIWFGALSTLTSAVVLFAAMITFFVKFGGLLVCTVL LSAMWSLVLLPAVLMVVGPQGATGSVRAVVAAAVGRVCGVRRGGESAGKD ERGGDVEGRVGGAATTTRGETVWMGPVGGGAMEKRRGHCE* back to topspliced messenger RNA >Gchil11017.t1 ID=Gchil11017.t1|Name=Gchil11017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2373bp|location=Sequence derived from alignment at tig00000021_pilon:515551..518664- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTACTAGTGACGGCTCGGCGGCTGCCGTCGCCAAACCTTGTCTGTG GACGCGCTTATCTGTCAACCACACCAAGAAGACCTGTCTGCTTGCGTACG CGTTTCCTTTTCTCTCCATAGCTATCATTGCCCTTTCGCGTCAGTTCGCG TTTGATGACCCAAACGGTGTTGACTTTTTCATTCGCAACGATGAACTAAC CCGCCTTTTCGACGCACGAGAAGCTGCTCGCGAACAATATGCGTTTGGCG CATCAGCCTCTGTTGTGGAAAGAGCCACCGAGAGACCTGAATTTCACCTT AACGTTTTGTTTCGCGGAAAGTTGCCGCCGCAATTTGAAAAACTCCCTTC CAATGCGGACGAAAAGCAAACAGCTTCCAATGTATTAACTCGCAACAACT TGGCTCTGCTCAAGCAAATCGAGGACGATATTCTGGGCACAGCGGAGTAT CCTTCATATTGCTACTTTGACGAAACTGCCAAAGATTGCGCTGGCCGCAA CCTTGCATGCGCCCATCCGTTGTCACTCACCAACAGCCCATTCCTCTACG GAATATGGGAGGAAGGCCGTTTGTGTGGCCGAAGGAATACGAGTGAACCG CCAGCGGAAGAGCGGTTTGCCTCGTTTTTGAACTCGCTAGTCGACACGGA CAGCGAGGGAAATGCCGTCGTCAATGCGGCGTACAAGGAGTTTGTTGGAA AAGAATTTTCGAGGACTGAAAGCGGGAGCGAGCGCGGCAGCGGCAGTAGC AATCACAGCAGCAGCAGCAACATGCCGTTCTACTTCAAGTTTCTGCCGGG GAAATGGCAGAAGAAGAACGACACCGCGGGCTTGCACTACAGCTTTCTGG AGCGCTTTTTCGGCGGGATATGGACCAAACTGATATACCGAGGGCGATAC GCGCTGGTAGTGTTGGCACTGGTTTTGGCGGGCCTGGGTGTGTACGGGGC GACCAAGTTGGAGCCGATCCAGGAAACGGAGCAGTTTTTGCCCAGCGACC ACCCGCTGAGGGTGTTGCAGACAACTTTGGCAGACGGTTTCGGGGAGGAG CGACGGGCAGTGACGCTACAGGCGCGGGTAACGTGGGGCATTTCGGACAT TGATCGATCCGGCACGTCGCGCTTCCAGCCCGAGTCGATCGGGCGCGCGG TGCTGGACGAGAGGTTTGACCTGCGGCGCAAGGAAGTGCAAGAACAGGTG CGGAGGGCGTGCGGGTGGTTTGTGAGGCGGGAGGGGTTGGTGACGCAGCA GGCGGCGATGGAAGAGGCGGTGGACTGCTGGGTGAGCGACTACGAGCAGT GGCGCAAACAGGAGCTGAAGAAGGACGGGTTGGAGTCGTTTGAGACGCAC GCGCAGCTGGCGGAGGAGCTGAAGCGGTTCGGGGCGTTTGAGGCGGCAGA CAACAGCAGGCCGTACGAACGGTACATAAAGTCGCAGGCGATCGGGTTTT CGGCGCAGCAGGAGCGGGTGGTGTTCACAGAGATTCGGTTCGTGACGGGC AAGAAGCCGGCGCTGACGGCCAAGTTCATGCGGCCGATCTACAACGAGTG GAAGGCGGCGACGGAGGGACTGAACGCGATTGGACCGGAGGCGTCCGGGG ATCGGGGTGCGTTTGTGACGAGCGGAGTAGCGGGTAACGTGGAGGGGGGA ATCAACGTGTGGTCGTGGATGCGGAGCCAGGAGACGCTGGTTATATCGAT GTTCAGTGGGGTGGGGATCATGGTGGGGGTGGCGTTGGTGACGCTGACGG TGTGCACGATGAACTGGGCGGTATCGCTGATTGCAACGGTTTGCATTGGC GGGCTGGTGAGCATGTTGCTTGGGGTGATGCACGCTGTGGGTTGGGAGTT GGGGACGACGGAGACGATTGCTGTGGTGATCAGCATTGGGTACGGGTTTG ACGGGGTGGCACACATGGCGACGGCGTACGTGGAGTGCGGCAAGGAAGGA CGAGTGGAGCGGACGCGGCACGCGCTGCTGACGTTGGGGGTGTCGATCTG GTTTGGGGCGTTGTCGACGCTGACGTCGGCGGTGGTGTTGTTTGCGGCGA TGATAACGTTTTTCGTCAAGTTTGGGGGACTGCTGGTGTGCACGGTGTTG CTGAGTGCGATGTGGTCGCTGGTGCTGCTACCGGCAGTGCTGATGGTGGT GGGGCCGCAGGGGGCGACGGGATCAGTACGGGCGGTGGTGGCGGCGGCGG TTGGGAGGGTGTGTGGGGTGCGACGCGGGGGGGAGAGCGCGGGCAAGGAC GAGCGTGGTGGTGACGTGGAGGGTAGGGTGGGGGGGGCGGCAACGACTAC GAGGGGAGAGACGGTGTGGATGGGGCCGGTGGGCGGAGGAGCAATGGAGA AACGGCGGGGGCACTGTGAGTGA back to topprotein sequence of Gchil11017.t1 >Gchil11017.t1 ID=Gchil11017.t1|Name=Gchil11017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=791bp
MATSDGSAAAVAKPCLWTRLSVNHTKKTCLLAYAFPFLSIAIIALSRQFA FDDPNGVDFFIRNDELTRLFDAREAAREQYAFGASASVVERATERPEFHL NVLFRGKLPPQFEKLPSNADEKQTASNVLTRNNLALLKQIEDDILGTAEY PSYCYFDETAKDCAGRNLACAHPLSLTNSPFLYGIWEEGRLCGRRNTSEP PAEERFASFLNSLVDTDSEGNAVVNAAYKEFVGKEFSRTESGSERGSGSS NHSSSSNMPFYFKFLPGKWQKKNDTAGLHYSFLERFFGGIWTKLIYRGRY ALVVLALVLAGLGVYGATKLEPIQETEQFLPSDHPLRVLQTTLADGFGEE RRAVTLQARVTWGISDIDRSGTSRFQPESIGRAVLDERFDLRRKEVQEQV RRACGWFVRREGLVTQQAAMEEAVDCWVSDYEQWRKQELKKDGLESFETH AQLAEELKRFGAFEAADNSRPYERYIKSQAIGFSAQQERVVFTEIRFVTG KKPALTAKFMRPIYNEWKAATEGLNAIGPEASGDRGAFVTSGVAGNVEGG INVWSWMRSQETLVISMFSGVGIMVGVALVTLTVCTMNWAVSLIATVCIG GLVSMLLGVMHAVGWELGTTETIAVVISIGYGFDGVAHMATAYVECGKEG RVERTRHALLTLGVSIWFGALSTLTSAVVLFAAMITFFVKFGGLLVCTVL LSAMWSLVLLPAVLMVVGPQGATGSVRAVVAAAVGRVCGVRRGGESAGKD ERGGDVEGRVGGAATTTRGETVWMGPVGGGAMEKRRGHCE* back to topmRNA from alignment at tig00000021_pilon:515551..518664- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil11017.t1 ID=Gchil11017.t1|Name=Gchil11017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=3114bp|location=Sequence derived from alignment at tig00000021_pilon:515551..518664- (Gracilaria chilensis NLEC103_M9 male) ATGGCTACTAGTGACGGCTCGGCGGCTGCCGTCGCCAAACCTTGTCTGTG
GACGCGCTTATCTGTCAACCACACCAAGAAGACCTGTCTGCTTGCGTACG
CGTTTCCTTTTCTCTCCATAGCTATCATTGCCCTTTCGCGTCAGTTCGCG
TTTGATGACCCAAACGGTGTTGACTTTTTCATTCGCAACGATGAACTAAC
CCGCCTTTTCGACGCACGAGAAGCTGCTCGCGAACAATATGCGTTTGGCG
CATCAGCCTCTGTTGTGGAAAGAGCCACCGAGAGACCTGAATTTCACCTT
AACGTTTTGTTTCGCGGAAAGTTGCCGCCGCAATTTGAAAAACTCCCTTC
CAATGCGGACGAAAAGCAAACAGCTTCCAATGTATTAACTCGCAACAACT
TGGCTCTGCTCAAGCAAATCGAGGACGATATTCTGGGCACAGCGGAGTAT
CCTTCATATTGCTACTTTGACGAAACTGCCAAAGATTGCGCTGGCCGCAA
CCTTGCATGCGCCCATCCGTTGTCACTCACCAACAGCCCATTCCTCTACG
GAATATGGGAGGAAGGCCGTTTGTGTGGCCGAAGGAATACGAGTGAACCG
CCAGCGGAAGAGCGGTTTGCCTCGTTTTTGAACTCGCTAGTCGACACGGA
CAGCGAGGGAAATGCCGTCGTCAATGCGGCGTACAAGGAGTTTGTTGGAA
AAGAATTTTCGGTTGGAGGCAACGGCACCTGGCTCATGCGCAGCATTTTG
CGCATCGGAGGTCCTTTTCGAGGCTACACTGCCATTGACGACAGAAAAGC
AGAACAAGAAGACCAATACGTTCAGTGGGGTCTGCGCGAAACAGACACGG
TCGAGCAGCTATCCACAGAAGCATACGATGTCACACTAACCAGTGTAAAA
CTGGGAAACGCTGCGTTCTCTGACACGGCGTTGAGGGATTTGTCGTTTTG
CGTGGTGGCCATTGTTCTCGTGTTTCTGGTTATCTGGTTCCACACGGGCA
GTGCATTCTTGGCGGTCGCAGCGCTGGGTCAAATATTCTTTTCGTTCCCG
GTGGCGTACGTGCTTTACCACTTCGTGTTCCAACAAAAGTACTTTGCGCC
GCTGCAGATTCTTGCCATCTTCCTGTTGCTGGGAATCGGCGCAGACGACG
TGTTTGTATTCACAGACGCGTGGAAGCAGTCGCTGGTAGATTTGGGAACC
GAAGCTGACGTCATCACCAGGATGGACTGGACGTACCGGCGGGCCGTGAG
GGCGATGATGGTGACGTCGGTGACGACGGCTGCTGCGTTCTTCGTGACGG
CAGCCTCGCCCATTATGCCCATCAGCACGCTGGGCGTGTGGGCAGGATTG
CTTGTGCTGGTGCAGTTTGCGCTGGTGATCACGGCGTATCCTTCGGCCGT
GATACTTTGGCACCGATTCTGGTCACAACGCAGCTGCCTGCCGTGCTTCA
AGAGGACTGAAAGCGGGAGCGAGCGCGGCAGCGGCAGTAGCAATCACAGC
AGCAGCAGCAACATGCCGTTCTACTTCAAGTTTCTGCCGGGGAAATGGCA
GAAGAAGAACGACACCGCGGGCTTGCACTACAGCTTTCTGGAGCGCTTTT
TCGGCGGGATATGGACCAAACTGATATACCGAGGGCGATACGCGCTGGTA
GTGTTGGCACTGGTTTTGGCGGGCCTGGGTGTGTACGGGGCGACCAAGTT
GGAGCCGATCCAGGAAACGGAGCAGTTTTTGCCCAGCGACCACCCGCTGA
GGGTGTTGCAGACAACTTTGGCAGACGGTTTCGGGGAGGAGCGACGGGCA
GTGACGCTACAGGCGCGGGTAACGTGGGGCATTTCGGACATTGATCGATC
CGGCACGTCGCGCTTCCAGCCCGAGTCGATCGGGCGCGCGGTGCTGGACG
AGAGGTTTGACCTGCGGCGCAAGGAAGTGCAAGAACAGGTGCGGAGGGCG
TGCGGGTGGTTTGTGAGGCGGGAGGGGTTGGTGACGCAGCAGGCGGCGAT
GGAAGAGGCGGTGGACTGCTGGGTGAGCGACTACGAGCAGTGGCGCAAAC
AGGAGCTGAAGAAGGACGGGTTGGAGTCGTTTGAGACGCACGCGCAGCTG
GCGGAGGAGCTGAAGCGGTTCGGGGCGTTTGAGGCGGCAGACAACAGCAG
GCCGTACGAACGGTACATAAAGTCGCAGGCGATCGGGTTTTCGGCGCAGC
AGGAGCGGGTGGTGTTCACAGAGATTCGGTTCGTGACGGGCAAGAAGCCG
GCGCTGACGGCCAAGTTCATGCGGCCGATCTACAACGAGTGGAAGGCGGC
GACGGAGGGACTGAACGCGATTGGACCGGAGGCGTCCGGGGATCGGGGTG
CGTTTGTGACGAGCGGAGTAGCGGGTAACGTGGAGGGGGGAATCAACGTG
TGGTCGTGGATGCGGAGCCAGGAGACGCTGGTTATATCGATGTTCAGTGG
GGTGGGGATCATGGTGGGGGTGGCGTTGGTGACGCTGACGGTGTGCACGA
TGAACTGGGCGGTATCGCTGATTGCAACGGTTTGCATTGGCGGGCTGGTG
AGCATGTTGCTTGGGGTGATGCACGCTGTGGGTTGGGAGTTGGGGACGAC
GGAGACGATTGCTGTGGTGATCAGCATTGGGTACGGGTTTGACGGGGTGG
CACACATGGCGACGGCGTACGTGGAGTGCGGCAAGGAAGGACGAGTGGAG
CGGACGCGGCACGCGCTGCTGACGTTGGGGGTGTCGATCTGGTTTGGGGC
GTTGTCGACGCTGACGTCGGCGGTGGTGTTGTTTGCGGCGATGATAACGT
TTTTCGTCAAGTTTGGGGGACTGCTGGTGTGCACGGTGTTGCTGAGTGCG
ATGTGGTCGCTGGTGCTGCTACCGGCAGTGCTGATGGTGGTGGGGCCGCA
GGGGGCGACGGGATCAGTACGGGCGGTGGTGGCGGCGGCGGTTGGGAGGG
TGTGTGGGGTGCGACGCGGGGGGGAGAGCGCGGGCAAGGACGAGCGTGGT
GGTGACGTGGAGGGTAGGGTGGGGGGGGCGGCAACGACTACGAGGGGAGA
GACGGTGTGGATGGGGCCGGTGGGCGGAGGAGCAATGGAGAAACGGCGGG
GGCACTGTGAGTGA back to topCoding sequence (CDS) from alignment at tig00000021_pilon:515551..518664- >Gchil11017.t1 ID=Gchil11017.t1|Name=Gchil11017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2373bp|location=Sequence derived from alignment at tig00000021_pilon:515551..518664- (Gracilaria chilensis NLEC103_M9 male) ATGGCTACTAGTGACGGCTCGGCGGCTGCCGTCGCCAAACCTTGTCTGTG GACGCGCTTATCTGTCAACCACACCAAGAAGACCTGTCTGCTTGCGTACG CGTTTCCTTTTCTCTCCATAGCTATCATTGCCCTTTCGCGTCAGTTCGCG TTTGATGACCCAAACGGTGTTGACTTTTTCATTCGCAACGATGAACTAAC CCGCCTTTTCGACGCACGAGAAGCTGCTCGCGAACAATATGCGTTTGGCG CATCAGCCTCTGTTGTGGAAAGAGCCACCGAGAGACCTGAATTTCACCTT AACGTTTTGTTTCGCGGAAAGTTGCCGCCGCAATTTGAAAAACTCCCTTC CAATGCGGACGAAAAGCAAACAGCTTCCAATGTATTAACTCGCAACAACT TGGCTCTGCTCAAGCAAATCGAGGACGATATTCTGGGCACAGCGGAGTAT CCTTCATATTGCTACTTTGACGAAACTGCCAAAGATTGCGCTGGCCGCAA CCTTGCATGCGCCCATCCGTTGTCACTCACCAACAGCCCATTCCTCTACG GAATATGGGAGGAAGGCCGTTTGTGTGGCCGAAGGAATACGAGTGAACCG CCAGCGGAAGAGCGGTTTGCCTCGTTTTTGAACTCGCTAGTCGACACGGA CAGCGAGGGAAATGCCGTCGTCAATGCGGCGTACAAGGAGTTTGTTGGAA AAGAATTTTCGAGGACTGAAAGCGGGAGCGAGCGCGGCAGCGGCAGTAGC AATCACAGCAGCAGCAGCAACATGCCGTTCTACTTCAAGTTTCTGCCGGG GAAATGGCAGAAGAAGAACGACACCGCGGGCTTGCACTACAGCTTTCTGG AGCGCTTTTTCGGCGGGATATGGACCAAACTGATATACCGAGGGCGATAC GCGCTGGTAGTGTTGGCACTGGTTTTGGCGGGCCTGGGTGTGTACGGGGC GACCAAGTTGGAGCCGATCCAGGAAACGGAGCAGTTTTTGCCCAGCGACC ACCCGCTGAGGGTGTTGCAGACAACTTTGGCAGACGGTTTCGGGGAGGAG CGACGGGCAGTGACGCTACAGGCGCGGGTAACGTGGGGCATTTCGGACAT TGATCGATCCGGCACGTCGCGCTTCCAGCCCGAGTCGATCGGGCGCGCGG TGCTGGACGAGAGGTTTGACCTGCGGCGCAAGGAAGTGCAAGAACAGGTG CGGAGGGCGTGCGGGTGGTTTGTGAGGCGGGAGGGGTTGGTGACGCAGCA GGCGGCGATGGAAGAGGCGGTGGACTGCTGGGTGAGCGACTACGAGCAGT GGCGCAAACAGGAGCTGAAGAAGGACGGGTTGGAGTCGTTTGAGACGCAC GCGCAGCTGGCGGAGGAGCTGAAGCGGTTCGGGGCGTTTGAGGCGGCAGA CAACAGCAGGCCGTACGAACGGTACATAAAGTCGCAGGCGATCGGGTTTT CGGCGCAGCAGGAGCGGGTGGTGTTCACAGAGATTCGGTTCGTGACGGGC AAGAAGCCGGCGCTGACGGCCAAGTTCATGCGGCCGATCTACAACGAGTG GAAGGCGGCGACGGAGGGACTGAACGCGATTGGACCGGAGGCGTCCGGGG ATCGGGGTGCGTTTGTGACGAGCGGAGTAGCGGGTAACGTGGAGGGGGGA ATCAACGTGTGGTCGTGGATGCGGAGCCAGGAGACGCTGGTTATATCGAT GTTCAGTGGGGTGGGGATCATGGTGGGGGTGGCGTTGGTGACGCTGACGG TGTGCACGATGAACTGGGCGGTATCGCTGATTGCAACGGTTTGCATTGGC GGGCTGGTGAGCATGTTGCTTGGGGTGATGCACGCTGTGGGTTGGGAGTT GGGGACGACGGAGACGATTGCTGTGGTGATCAGCATTGGGTACGGGTTTG ACGGGGTGGCACACATGGCGACGGCGTACGTGGAGTGCGGCAAGGAAGGA CGAGTGGAGCGGACGCGGCACGCGCTGCTGACGTTGGGGGTGTCGATCTG GTTTGGGGCGTTGTCGACGCTGACGTCGGCGGTGGTGTTGTTTGCGGCGA TGATAACGTTTTTCGTCAAGTTTGGGGGACTGCTGGTGTGCACGGTGTTG CTGAGTGCGATGTGGTCGCTGGTGCTGCTACCGGCAGTGCTGATGGTGGT GGGGCCGCAGGGGGCGACGGGATCAGTACGGGCGGTGGTGGCGGCGGCGG TTGGGAGGGTGTGTGGGGTGCGACGCGGGGGGGAGAGCGCGGGCAAGGAC GAGCGTGGTGGTGACGTGGAGGGTAGGGTGGGGGGGGCGGCAACGACTAC GAGGGGAGAGACGGTGTGGATGGGGCCGGTGGGCGGAGGAGCAATGGAGA AACGGCGGGGGCACTGTGAGTGA back to top
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