Gchil11015.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11015.t1
Unique NameGchil11015.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:511867..513036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703857.1
Preferred nameSLC17A9
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08193,ko:K10398,ko:K12303
KEGG TC2.A.1.14,2.A.1.14.21
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009706,GO:0009941,GO:0009987,GO:0010028,GO:0015075,GO:0015144,GO:0015145,GO:0015229,GO:0015291,GO:0015318,GO:0015711,GO:0015749,GO:0015849,GO:0015882,GO:0016020,GO:0016021,GO:0016108,GO:0016116,GO:0016122,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034219,GO:0034220,GO:0034357,GO:0035461,GO:0042170,GO:0042651,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051119,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0071702,GO:0071704,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue9.35e-108
EggNOG OGsKOG2532@1|root,KOG2532@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryL
BRITEko00000,ko02000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11015Gchil11015Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 511867..513036 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11015.t1.start1Gchil11015.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 511867..511869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11015.t1.CDS1Gchil11015.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 511867..513036 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11015.t1.exon1Gchil11015.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 511867..513036 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11015.t1.stop1Gchil11015.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 513034..513036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11015.t1Gchil11015.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 511867..513036 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11015.t1 ID=Gchil11015.t1|Name=Gchil11015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=390bp
MDRINLSVAIIPMAAHYGWTQTQKGVVQAAFFLGYMSTQIAGGKLADAHG
GRRVLAAGVLLWSVCTALTPIAADASLPCLLAVRVVMGVGEGVAMPAMNA
LVTVAMGCDHATRARALAFVYSGMYAGSIVGLLITAAIVRLADWRLVFYV
CALIGVIWSVVFYVHAAPVVQPPQQQQQQQQQQQAAPPSVREMLSRSCVW
AIIVAHFCCTWGYFVLLSWLPTYLNSRFGVDSTHSSLLSTVPWVAMFMTA
NIGGQIASWLQRGGLSRTHTRKAMQAVGFVGPALMLALLGGARRRTSAVA
LVTAALALGSFSQSGVYANHAEVAPTAAGTLLGVSNTFASMPGLLGVALS
GWQLQRSGDDWAAVFAVAIGFDILGLVVYTALATSRRQW*
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spliced messenger RNA

>Gchil11015.t1 ID=Gchil11015.t1|Name=Gchil11015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000021_pilon:511867..513036+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCGCATCAATCTATCAGTGGCCATCATCCCCATGGCGGCGCACTA
CGGCTGGACGCAGACGCAAAAGGGCGTCGTGCAGGCCGCCTTCTTCCTGG
GCTACATGAGCACGCAGATCGCCGGCGGCAAACTGGCCGATGCGCACGGC
GGCCGTCGCGTGTTGGCCGCCGGCGTGTTGCTGTGGAGCGTGTGTACTGC
GCTCACGCCCATCGCCGCCGATGCGTCGCTGCCCTGTTTGCtggccgtgc
gcgtggtcatgggcgtgggcgagggcgtggCCATGCCCGCCATGAACGCG
CTTGTCACTGTGGCCATGGGTTGCGATCATGCCAcgcgcgcgcgcgcgct
cgcCTTTGTGTACTCGGGCATGTACGCCGGCTCCATCGTCGGCTTGCTCA
TCACCGCCGCCATCGTGCGCCTAGCCGATTGGCGGCTGGTGTTCTACGTG
TGCGCGCTCATCGGCGTCATTTGGAGCGTCGTGTTCTACGTGCACGCCGC
GCCAGTAGTACAGCCACCacaacaacaacaacaacaacaacaacaacaac
aaGCAGCGCCTCCAAGCGTGCGCGAGATGCTGTCGCGGTCGTGCGTGTGG
GCCATCATCGTGGCGCACTTTTGCTGCACGTGGGGCTACTTTGTGTTGCT
GAGCTGGCTCCCAACGTATCTCAACTCGCGCTTCGGTGTGGACAGCACAC
ACTCCTCACTACTATCCACTGTGCCGTGGGTGGCCATGTTCATGACGGCC
AACATCGGCGGGCAGATAGCTAGCTGGTTACAGCGCGGTGGGCTGAGTCG
CACGCACACGCGCAAGGCAATGCAGGCGGTGGGCTTTGtggggccggcgc
tgatgctggcgttgctgggcggcgcgcggcgacgcacgagtgccgtggcg
ctggtgacggcggcgctggcgctggGCAGCTTCTCGCAGTCGGGCGTGTA
CGCCAACCACGCCGAGGTGGCGCCCACAGCGGCTGGCACGCTGTTGGGCG
TGTCCAACACATTTGCGTCGATGCCCGGGCTGCTGGGCGTGGCGCTGTCC
GGCTGGCAGCTGCAGCGCAGCGGCGACGATTGGGCGGCGGTGTTTGCGGT
GGCCATTGGCTTTGACATACTGGGGCTGGTGGTGTACACCGCGCTGGCGA
CCTCGCGGCGGCAGTGGTGA
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protein sequence of Gchil11015.t1

>Gchil11015.t1 ID=Gchil11015.t1|Name=Gchil11015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=390bp
MDRINLSVAIIPMAAHYGWTQTQKGVVQAAFFLGYMSTQIAGGKLADAHG
GRRVLAAGVLLWSVCTALTPIAADASLPCLLAVRVVMGVGEGVAMPAMNA
LVTVAMGCDHATRARALAFVYSGMYAGSIVGLLITAAIVRLADWRLVFYV
CALIGVIWSVVFYVHAAPVVQPPQQQQQQQQQQQAAPPSVREMLSRSCVW
AIIVAHFCCTWGYFVLLSWLPTYLNSRFGVDSTHSSLLSTVPWVAMFMTA
NIGGQIASWLQRGGLSRTHTRKAMQAVGFVGPALMLALLGGARRRTSAVA
LVTAALALGSFSQSGVYANHAEVAPTAAGTLLGVSNTFASMPGLLGVALS
GWQLQRSGDDWAAVFAVAIGFDILGLVVYTALATSRRQW*
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mRNA from alignment at tig00000021_pilon:511867..513036+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11015.t1 ID=Gchil11015.t1|Name=Gchil11015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000021_pilon:511867..513036+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCATCAATCTATCAGTGGCCATCATCCCCATGGCGGCGCACTA
CGGCTGGACGCAGACGCAAAAGGGCGTCGTGCAGGCCGCCTTCTTCCTGG
GCTACATGAGCACGCAGATCGCCGGCGGCAAACTGGCCGATGCGCACGGC
GGCCGTCGCGTGTTGGCCGCCGGCGTGTTGCTGTGGAGCGTGTGTACTGC
GCTCACGCCCATCGCCGCCGATGCGTCGCTGCCCTGTTTGCtggccgtgc
gcgtggtcatgggcgtgggcgagggcgtggCCATGCCCGCCATGAACGCG
CTTGTCACTGTGGCCATGGGTTGCGATCATGCCAcgcgcgcgcgcgcgct
cgcCTTTGTGTACTCGGGCATGTACGCCGGCTCCATCGTCGGCTTGCTCA
TCACCGCCGCCATCGTGCGCCTAGCCGATTGGCGGCTGGTGTTCTACGTG
TGCGCGCTCATCGGCGTCATTTGGAGCGTCGTGTTCTACGTGCACGCCGC
GCCAGTAGTACAGCCACCacaacaacaacaacaacaacaacaacaacaac
aaGCAGCGCCTCCAAGCGTGCGCGAGATGCTGTCGCGGTCGTGCGTGTGG
GCCATCATCGTGGCGCACTTTTGCTGCACGTGGGGCTACTTTGTGTTGCT
GAGCTGGCTCCCAACGTATCTCAACTCGCGCTTCGGTGTGGACAGCACAC
ACTCCTCACTACTATCCACTGTGCCGTGGGTGGCCATGTTCATGACGGCC
AACATCGGCGGGCAGATAGCTAGCTGGTTACAGCGCGGTGGGCTGAGTCG
CACGCACACGCGCAAGGCAATGCAGGCGGTGGGCTTTGtggggccggcgc
tgatgctggcgttgctgggcggcgcgcggcgacgcacgagtgccgtggcg
ctggtgacggcggcgctggcgctggGCAGCTTCTCGCAGTCGGGCGTGTA
CGCCAACCACGCCGAGGTGGCGCCCACAGCGGCTGGCACGCTGTTGGGCG
TGTCCAACACATTTGCGTCGATGCCCGGGCTGCTGGGCGTGGCGCTGTCC
GGCTGGCAGCTGCAGCGCAGCGGCGACGATTGGGCGGCGGTGTTTGCGGT
GGCCATTGGCTTTGACATACTGGGGCTGGTGGTGTACACCGCGCTGGCGA
CCTCGCGGCGGCAGTGGTGA
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Coding sequence (CDS) from alignment at tig00000021_pilon:511867..513036+

>Gchil11015.t1 ID=Gchil11015.t1|Name=Gchil11015.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00000021_pilon:511867..513036+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCGCATCAATCTATCAGTGGCCATCATCCCCATGGCGGCGCACTA
CGGCTGGACGCAGACGCAAAAGGGCGTCGTGCAGGCCGCCTTCTTCCTGG
GCTACATGAGCACGCAGATCGCCGGCGGCAAACTGGCCGATGCGCACGGC
GGCCGTCGCGTGTTGGCCGCCGGCGTGTTGCTGTGGAGCGTGTGTACTGC
GCTCACGCCCATCGCCGCCGATGCGTCGCTGCCCTGTTTGCtggccgtgc
gcgtggtcatgggcgtgggcgagggcgtggCCATGCCCGCCATGAACGCG
CTTGTCACTGTGGCCATGGGTTGCGATCATGCCAcgcgcgcgcgcgcgct
cgcCTTTGTGTACTCGGGCATGTACGCCGGCTCCATCGTCGGCTTGCTCA
TCACCGCCGCCATCGTGCGCCTAGCCGATTGGCGGCTGGTGTTCTACGTG
TGCGCGCTCATCGGCGTCATTTGGAGCGTCGTGTTCTACGTGCACGCCGC
GCCAGTAGTACAGCCACCacaacaacaacaacaacaacaacaacaacaac
aaGCAGCGCCTCCAAGCGTGCGCGAGATGCTGTCGCGGTCGTGCGTGTGG
GCCATCATCGTGGCGCACTTTTGCTGCACGTGGGGCTACTTTGTGTTGCT
GAGCTGGCTCCCAACGTATCTCAACTCGCGCTTCGGTGTGGACAGCACAC
ACTCCTCACTACTATCCACTGTGCCGTGGGTGGCCATGTTCATGACGGCC
AACATCGGCGGGCAGATAGCTAGCTGGTTACAGCGCGGTGGGCTGAGTCG
CACGCACACGCGCAAGGCAATGCAGGCGGTGGGCTTTGtggggccggcgc
tgatgctggcgttgctgggcggcgcgcggcgacgcacgagtgccgtggcg
ctggtgacggcggcgctggcgctggGCAGCTTCTCGCAGTCGGGCGTGTA
CGCCAACCACGCCGAGGTGGCGCCCACAGCGGCTGGCACGCTGTTGGGCG
TGTCCAACACATTTGCGTCGATGCCCGGGCTGCTGGGCGTGGCGCTGTCC
GGCTGGCAGCTGCAGCGCAGCGGCGACGATTGGGCGGCGGTGTTTGCGGT
GGCCATTGGCTTTGACATACTGGGGCTGGTGGTGTACACCGCGCTGGCGA
CCTCGCGGCGGCAGTGGTGA
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