Gchil11011.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11011.t1
Unique NameGchil11011.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:336628..337615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11011Gchil11011Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 336628..337615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1Gchil11011.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 336628..337615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1.start1Gchil11011.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 336628..336630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1.CDS1Gchil11011.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 336628..336924 +
Gchil11011.t1.CDS2Gchil11011.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 337184..337615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1.exon1Gchil11011.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 336628..336924 +
Gchil11011.t1.exon2Gchil11011.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 337184..337615 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1.intron1Gchil11011.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 336925..337183 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11011.t1.stop1Gchil11011.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 337613..337615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11011.t1 ID=Gchil11011.t1|Name=Gchil11011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp
MSKGVAVFVEYPTGPSIPTLFNYARNSAISANGILRIGSYPGRNAVPDLD
WDIWFSTRCSKWTEFYTSRVGGYFPIPQYWHEIKSPRGCPLELLPSITYQ
GRGRPRRDYSPGRTCLGSDFVWYNPWTNQHIDGDHAKVLQETPRAMPPTQ
PTGYVHKPTPHNADALVEEMQEIDYDEEPEDLILEDPALGENNAIEPMVL
AAMQSSVPEPVRPAVASYDAELGNLKQVPEDARIPPHPVQGN*
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spliced messenger RNA

>Gchil11011.t1 ID=Gchil11011.t1|Name=Gchil11011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000021_pilon:336628..337615+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtccaaaggtgtcgcggtgttcgtggagtatccaacggggccctctat
tccgacactcttcaattatgcgcggaattccgctatctccgcaaacggga
tactccgtattgggagttaccccggtcggaacgccgtacccgatctcgac
tgggatatttggttctctaccagatgctctaagtggaccgaattctatac
ctcgcgcgtcggaggctacttcccgattcctcaatactggcatgagatca
aaagtcctcgtggctgtcctctggagcttcttccttcaatcacctaccag
ggtagaggacgtcctcgtcgcgactattcacctggaagaacctgtctcgg
cagtgactttgtctggtacaacccttggactaaccagcatatcgacggcg
atcacgccaaagttctgcaagaaactccgcgagcaatgcctccaacccag
ccgactggttacgtacacaagccaactcctcacaatgcagacgcactcgt
cgaggagatgcaagaaatcgattacgacgaagagccagaagatctcatcc
tcgaggatcccgctttgggtgaaaacaacgccatagagccaatggtcctt
gcagcaatgcagagctctgtacctgagcctgttcgaccagcagtggcttc
ctacgatgccgagcttggcaatctgaagcaggtccctgaagacgctagga
ttcctccccaccctgttcaaggtaattga
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protein sequence of Gchil11011.t1

>Gchil11011.t1 ID=Gchil11011.t1|Name=Gchil11011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MSKGVAVFVEYPTGPSIPTLFNYARNSAISANGILRIGSYPGRNAVPDLD
WDIWFSTRCSKWTEFYTSRVGGYFPIPQYWHEIKSPRGCPLELLPSITYQ
GRGRPRRDYSPGRTCLGSDFVWYNPWTNQHIDGDHAKVLQETPRAMPPTQ
PTGYVHKPTPHNADALVEEMQEIDYDEEPEDLILEDPALGENNAIEPMVL
AAMQSSVPEPVRPAVASYDAELGNLKQVPEDARIPPHPVQGN*
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mRNA from alignment at tig00000021_pilon:336628..337615+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11011.t1 ID=Gchil11011.t1|Name=Gchil11011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=988bp|location=Sequence derived from alignment at tig00000021_pilon:336628..337615+ (Gracilaria chilensis NLEC103_M9 male)
atgtccaaaggtgtcgcggtgttcgtggagtatccaacggggccctctat
tccgacactcttcaattatgcgcggaattccgctatctccgcaaacggga
tactccgtattgggagttaccccggtcggaacgccgtacccgatctcgac
tgggatatttggttctctaccagatgctctaagtggaccgaattctatac
ctcgcgcgtcggaggctacttcccgattcctcaatactggcatgagatca
aaagtcctcgtggctgtcctctggagcttcttccttcaatcacctacgta
ggttccttactagcaaatgatccgttttccggttattgggtagtcgtcta
cattgaattcatcgcaaagatggccgtatccatcttataggatgtgtacg
acacatatcgtttgtggtatatgagcccgattgcttgacaacttgcgtga
gaactcgatctggcgctcctcctgggctcacgtgccaatcacgaaaaatt
tctccgcatgatgaatgtgattgaccagatgactggacccttttccttcc
gaacagcagggtagaggacgtcctcgtcgcgactattcacctggaagaac
ctgtctcggcagtgactttgtctggtacaacccttggactaaccagcata
tcgacggcgatcacgccaaagttctgcaagaaactccgcgagcaatgcct
ccaacccagccgactggttacgtacacaagccaactcctcacaatgcaga
cgcactcgtcgaggagatgcaagaaatcgattacgacgaagagccagaag
atctcatcctcgaggatcccgctttgggtgaaaacaacgccatagagcca
atggtccttgcagcaatgcagagctctgtacctgagcctgttcgaccagc
agtggcttcctacgatgccgagcttggcaatctgaagcaggtccctgaag
acgctaggattcctccccaccctgttcaaggtaattga
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Coding sequence (CDS) from alignment at tig00000021_pilon:336628..337615+

>Gchil11011.t1 ID=Gchil11011.t1|Name=Gchil11011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000021_pilon:336628..337615+ (Gracilaria chilensis NLEC103_M9 male)
atgtccaaaggtgtcgcggtgttcgtggagtatccaacggggccctctat
tccgacactcttcaattatgcgcggaattccgctatctccgcaaacggga
tactccgtattgggagttaccccggtcggaacgccgtacccgatctcgac
tgggatatttggttctctaccagatgctctaagtggaccgaattctatac
ctcgcgcgtcggaggctacttcccgattcctcaatactggcatgagatca
aaagtcctcgtggctgtcctctggagcttcttccttcaatcacctaccag
ggtagaggacgtcctcgtcgcgactattcacctggaagaacctgtctcgg
cagtgactttgtctggtacaacccttggactaaccagcatatcgacggcg
atcacgccaaagttctgcaagaaactccgcgagcaatgcctccaacccag
ccgactggttacgtacacaagccaactcctcacaatgcagacgcactcgt
cgaggagatgcaagaaatcgattacgacgaagagccagaagatctcatcc
tcgaggatcccgctttgggtgaaaacaacgccatagagccaatggtcctt
gcagcaatgcagagctctgtacctgagcctgttcgaccagcagtggcttc
ctacgatgccgagcttggcaatctgaagcaggtccctgaagacgctagga
ttcctccccaccctgttcaaggtaattga
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