Gchil11010.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11010.t1
Unique NameGchil11010.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:332185..333297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML004611a-PA
PFAMsRVT_2
Max annot lvl33208|Metazoa
Evalue5.1e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38W8T@33154|Opisthokonta,3BZX0@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11010Gchil11010Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 332185..333297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1Gchil11010.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 332185..333297 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1.stop1Gchil11010.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 332185..332187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1.CDS1Gchil11010.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 332185..332593 -
Gchil11010.t1.CDS2Gchil11010.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 332699..333297 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1.exon1Gchil11010.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 332185..332593 -
Gchil11010.t1.exon2Gchil11010.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 332699..333297 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1.intron1Gchil11010.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 332594..332698 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11010.t1.start1Gchil11010.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 333295..333297 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11010.t1 ID=Gchil11010.t1|Name=Gchil11010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp
MKLPYRIVEAGRQSAKRVESWMIGTTEHQRLYGVTQLFTKKNKDGSITLI
IAKIVDDLLVAGREGYICIFTDTLEDEFEVGKVRVEAVLNFAGCDIIKDT
DQNLILSLLQNMERLKPMELSKQRRRERDNRANDEEIRQLLSLAGTLMSL
GSEVLPSASTSLGRKRNAVRDRKPEADSQVYSTGWDRKGNTDYPIRRIAG
TKQKRVTYSSFGAEILACAEAEDRRYDMKTTFANIFPKIKIAHYILVDSK
AIFDTIRTLHKCREFRLGKTVTIIKDPFEAGERDEITWIPGNLNMTDSLT
KRSTVHSAKTNRMFRDGFWDKDMTKGVSHDSENWQ*
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spliced messenger RNA

>Gchil11010.t1 ID=Gchil11010.t1|Name=Gchil11010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000021_pilon:332185..333297- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTTCCGTATAGGATTGTAGAAGCCGGAAGGCAATCGGCGAAGCG
TGTTGAGTCATGGATGATTGGCACGACAGAACATCAAAGATTATACGGAG
TCACCCAGCTGTTCACTAAGAAAAACAAAGATGGTTCCATCACATTGATC
ATCGCCAAGATTGTCGACGATCTTTTAGTTGCTGGACGGGAAGGTTACAT
TTGTATCTTCACGGACACCCTAGAAGATGAGTTCGAAGTCGGAAAAGTCC
GAGTCGAAGCAGTTCTAAACTTCGCAGGCTGTGACATTATAAAAGATACA
GATCAAAACCTCATCCTATCATTGCTTCAAAATATGGAACGTCTCAAACC
AATGGAGCTATCGAAACAAAGAAGAAGGGAACGTGACAACAGAGCGAACG
ATGAGGAGATCAGACAACTACTTTCCTTAGCTGGAACTCTCATGTCTCTA
GGCTCAGAAGTCCTTCCATCAGCATCAACATCTCTTGGACGCAAACGCAA
TGCTGTAAGAGATAGGAAACCTGAAGCCGATAGTCAAGTATATTCGACCG
GTTGGGATCGAAAAGGCAACACTGATTACCCTATCCGACGCATCGCAGGT
ACGAAACAGAAACGCGTGACATATTCTTCGTTCGGTGCCGAGATCCTTGC
ATGTGCTGAAGCAGAAGATAGAAGATATGACATGAAGACGACATTCGCGA
ACATTTTTCCAAAGATCAAGATCGCGCATTACATCCTCGTGGATTCAAAG
GCAATTTTCGATACCATCAGAACTCTACACAAATGCCGCGAGTTTCGCCT
CGGGAAAACGGTCACAATTATCAAGGACCCCTTTGAGGCTGGAGAACGAG
ATGAGATTACCTGGATACCAGGAAACCTCAACATGACTGACTCGCTAACG
AAACGCAGCACTGTACACTCCGCTAAAACGAATCGCATGTTTCGAGATGG
ATTTTGGGATAAAGATATGACGAAAGGAGTCAGTCATGATTCCGAGAATT
GGCAATAG
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protein sequence of Gchil11010.t1

>Gchil11010.t1 ID=Gchil11010.t1|Name=Gchil11010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=336bp
MKLPYRIVEAGRQSAKRVESWMIGTTEHQRLYGVTQLFTKKNKDGSITLI
IAKIVDDLLVAGREGYICIFTDTLEDEFEVGKVRVEAVLNFAGCDIIKDT
DQNLILSLLQNMERLKPMELSKQRRRERDNRANDEEIRQLLSLAGTLMSL
GSEVLPSASTSLGRKRNAVRDRKPEADSQVYSTGWDRKGNTDYPIRRIAG
TKQKRVTYSSFGAEILACAEAEDRRYDMKTTFANIFPKIKIAHYILVDSK
AIFDTIRTLHKCREFRLGKTVTIIKDPFEAGERDEITWIPGNLNMTDSLT
KRSTVHSAKTNRMFRDGFWDKDMTKGVSHDSENWQ*
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mRNA from alignment at tig00000021_pilon:332185..333297-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11010.t1 ID=Gchil11010.t1|Name=Gchil11010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000021_pilon:332185..333297- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTTCCGTATAGGATTGTAGAAGCCGGAAGGCAATCGGCGAAGCG
TGTTGAGTCATGGATGATTGGCACGACAGAACATCAAAGATTATACGGAG
TCACCCAGCTGTTCACTAAGAAAAACAAAGATGGTTCCATCACATTGATC
ATCGCCAAGATTGTCGACGATCTTTTAGTTGCTGGACGGGAAGGTTACAT
TTGTATCTTCACGGACACCCTAGAAGATGAGTTCGAAGTCGGAAAAGTCC
GAGTCGAAGCAGTTCTAAACTTCGCAGGCTGTGACATTATAAAAGATACA
GATCAAAACCTCATCCTATCATTGCTTCAAAATATGGAACGTCTCAAACC
AATGGAGCTATCGAAACAAAGAAGAAGGGAACGTGACAACAGAGCGAACG
ATGAGGAGATCAGACAACTACTTTCCTTAGCTGGAACTCTCATGTCTCTA
GGCTCAGAAGTCCTTCCATCAGCATCAACATCTCTTGGACGCAAACGCAA
TGCTGTAAGAGATAGGAAACCTGAAGCCGATAGTCAAGTATATTCGACCG
GTTGGGATCGAAAAGGCAACACTGATTACCCTATCCGACGCATCGCAGGG
TAGTCGAGATCTCGCGTGCGGACAATCGAGAATAATATGCGGAATTCAGT
TTACCACCGTTGTAGACGATAACCCTATTTTTTTCATCCCCTGTACTGGT
CGAGTACGAAACAGAAACGCGTGACATATTCTTCGTTCGGTGCCGAGATC
CTTGCATGTGCTGAAGCAGAAGATAGAAGATATGACATGAAGACGACATT
CGCGAACATTTTTCCAAAGATCAAGATCGCGCATTACATCCTCGTGGATT
CAAAGGCAATTTTCGATACCATCAGAACTCTACACAAATGCCGCGAGTTT
CGCCTCGGGAAAACGGTCACAATTATCAAGGACCCCTTTGAGGCTGGAGA
ACGAGATGAGATTACCTGGATACCAGGAAACCTCAACATGACTGACTCGC
TAACGAAACGCAGCACTGTACACTCCGCTAAAACGAATCGCATGTTTCGA
GATGGATTTTGGGATAAAGATATGACGAAAGGAGTCAGTCATGATTCCGA
GAATTGGCAATAG
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Coding sequence (CDS) from alignment at tig00000021_pilon:332185..333297-

>Gchil11010.t1 ID=Gchil11010.t1|Name=Gchil11010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000021_pilon:332185..333297- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTTCCGTATAGGATTGTAGAAGCCGGAAGGCAATCGGCGAAGCG
TGTTGAGTCATGGATGATTGGCACGACAGAACATCAAAGATTATACGGAG
TCACCCAGCTGTTCACTAAGAAAAACAAAGATGGTTCCATCACATTGATC
ATCGCCAAGATTGTCGACGATCTTTTAGTTGCTGGACGGGAAGGTTACAT
TTGTATCTTCACGGACACCCTAGAAGATGAGTTCGAAGTCGGAAAAGTCC
GAGTCGAAGCAGTTCTAAACTTCGCAGGCTGTGACATTATAAAAGATACA
GATCAAAACCTCATCCTATCATTGCTTCAAAATATGGAACGTCTCAAACC
AATGGAGCTATCGAAACAAAGAAGAAGGGAACGTGACAACAGAGCGAACG
ATGAGGAGATCAGACAACTACTTTCCTTAGCTGGAACTCTCATGTCTCTA
GGCTCAGAAGTCCTTCCATCAGCATCAACATCTCTTGGACGCAAACGCAA
TGCTGTAAGAGATAGGAAACCTGAAGCCGATAGTCAAGTATATTCGACCG
GTTGGGATCGAAAAGGCAACACTGATTACCCTATCCGACGCATCGCAGGT
ACGAAACAGAAACGCGTGACATATTCTTCGTTCGGTGCCGAGATCCTTGC
ATGTGCTGAAGCAGAAGATAGAAGATATGACATGAAGACGACATTCGCGA
ACATTTTTCCAAAGATCAAGATCGCGCATTACATCCTCGTGGATTCAAAG
GCAATTTTCGATACCATCAGAACTCTACACAAATGCCGCGAGTTTCGCCT
CGGGAAAACGGTCACAATTATCAAGGACCCCTTTGAGGCTGGAGAACGAG
ATGAGATTACCTGGATACCAGGAAACCTCAACATGACTGACTCGCTAACG
AAACGCAGCACTGTACACTCCGCTAAAACGAATCGCATGTTTCGAGATGG
ATTTTGGGATAAAGATATGACGAAAGGAGTCAGTCATGATTCCGAGAATT
GGCAATAG
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