Gchil11009.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11009.t1
Unique Name	Gchil11009.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:323899..325185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LMF4
PFAMs	CBM_1,LPMO_10
Max annot lvl	2759\|Eukaryota
Evalue	3.02e-24
EggNOG OGs	2CZUJ@1\|root,2SBQR@2759\|Eukaryota
Description	Fungal-type cellulose-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11009	Gchil11009	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 323899..325185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11009.t1.start1	Gchil11009.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 323899..323901 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11009.t1.CDS1	Gchil11009.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 323899..325185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11009.t1.exon1	Gchil11009.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 323899..325185 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11009.t1.stop1	Gchil11009.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 325183..325185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11009.t1	Gchil11009.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 323899..325185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:323899..325185+
coding sequence from alignment at tig00000021_pilon:323899..325185+

mRNA sequence

>Gchil11009.t1 ID=Gchil11009.t1|Name=Gchil11009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=429bp
MNPSTTPLIYVLATFLSVLSVAYAHGMMCTPRQRGAYHTDKCSPDIDPPG
MDMNTMVPDFCPHCLNGGGKDTVTSNLPSEGWAVYEPTKNFFGTATRTGL
CGDAVGDNAHMLGGSFMPYPEVPMVSKWKKGQQVDFVAEIDTNHNGYLEF
FICNLDACGKPDLDASCFVNNHCVKLDRVAHPECENPSEATIHECGPIDA
AYPGRWYLPCRNTAHVGVHIVGGESGTMRYQLPADLECKHCVVQWYWATA
NSCAPRGFKNYFVNYNFPFGTTCDSDGGARGTYRADMAECGGSAVPEEFW
SCADVQITADGSDAGAVPAPSLPQADSAATEDQTGAVEDKVGEVSDPEME
TAETATGEEADTSMASSEESSDAKQDEVDSDSQDCVANDEPCDGGTPCCD
LQSVCVYIESAVGFRCRFWWSLSPESRG*

spliced messenger RNA

>Gchil11009.t1 ID=Gchil11009.t1|Name=Gchil11009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000021_pilon:323899..325185+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTTCCACAACTCCACTCATCTACGTGCTCGCCACGTTCCTCTC
AGTCCTCTCGGTCGCCTATGCGCATGGTATGATGTGCACTCCCCGTCAAC
GTGGTGCATACCATACAGATAAGTGCAGCCCTGATATCGACCCTCCAGGC
ATGGACATGAACACCATGGTCCCAGATTTCTGCCCCCACTGTCTCAATGG
CGGTGGTAAAGACACCGTCACATCAAATCTTCCCTCCGAGGGATGGGCAG
TGTATGAACCAACCAAGAACTTCTTCGGCACAGCTACGCGAACTGGCCTG
TGTGGAGATGCTGTCGGAGATAACGCCCATATGCTTGGTGGATCATTCAT
GCCGTATCCAGAGGTTCCGATGGTATCCAAGTGGAAGAAAGGTCAACAGG
TCGACTTTGTCGCCGAGATTGATACCAACCACAACGGCTACCTTGAATTC
TTCATCTGCAACCTCGACGCATGCGGAAAACCTGATCTTGACGCCAGCTG
CTTTGTAAACAACCATTGCGTCAAGCTCGACCGTGTGGCCCACCCGGAGT
GTGAGAATCCATCTGAGGCTACCATCCACGAGTGTGGGCCCATCGATGCC
GCCTACCCAGGACGCTGGTATCTCCCTTGCCGAAACACTGCTCACGTCGG
AGTCCATATCGTTGGTGGTGAGTCCGGAACCATGCGTTATCAACTTCCCG
CTGATCTGGAGTGCAAGCACTGCGTGGTGCAATGGTACTGGGCCACTGCC
AACTCTTGTGCGCCGCGAGGCTTCAAGAACTACTTTGTCAACTACAACTT
TCCGTTTGGCACCACGTGCGACTCTGATGGTGGCGCAAGAGGAACTTACC
GTGCGGATATGGCGGAATGTGGGGGAAGTGCCGTGCCAGAGGAATTTTGG
TCATGTGCTGATGTGCAGATCACTGCAGATGGTTCGGATGCTGGTGCTGT
TCCGGCGCCGTCACTTCCACAGGCCGATTCAGCTGCCACCGAGGACCAAA
CGGGTGCAGTGGAGGATAAAGTTGGAGAGGTAAGTGACCCCGAAATGGAA
ACGGCCGAGACTGCAACTGGTGAAGAAGCGGATACTTCCATGGCTTCCAG
TGAAGAGTCAAGTGATGCCAAGCAAGACGAAGTAGACAGCGACTCGCAGG
ATTGCGTTGCCAACGATGAGCCCTGTGACGGTGGTACACCGTGCTGCGAT
TTACAGAGTGTTTGTGTATACATTGAAAGCGCAGTCGGGTTCAGGTGCCG
CTTCTGGTGGAGCTTGTCTCCAGAATCACGGGGATAA

protein sequence of Gchil11009.t1

>Gchil11009.t1 ID=Gchil11009.t1|Name=Gchil11009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=429bp
MNPSTTPLIYVLATFLSVLSVAYAHGMMCTPRQRGAYHTDKCSPDIDPPG
MDMNTMVPDFCPHCLNGGGKDTVTSNLPSEGWAVYEPTKNFFGTATRTGL
CGDAVGDNAHMLGGSFMPYPEVPMVSKWKKGQQVDFVAEIDTNHNGYLEF
FICNLDACGKPDLDASCFVNNHCVKLDRVAHPECENPSEATIHECGPIDA
AYPGRWYLPCRNTAHVGVHIVGGESGTMRYQLPADLECKHCVVQWYWATA
NSCAPRGFKNYFVNYNFPFGTTCDSDGGARGTYRADMAECGGSAVPEEFW
SCADVQITADGSDAGAVPAPSLPQADSAATEDQTGAVEDKVGEVSDPEME
TAETATGEEADTSMASSEESSDAKQDEVDSDSQDCVANDEPCDGGTPCCD
LQSVCVYIESAVGFRCRFWWSLSPESRG*

mRNA from alignment at tig00000021_pilon:323899..325185+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11009.t1 ID=Gchil11009.t1|Name=Gchil11009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000021_pilon:323899..325185+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTTCCACAACTCCACTCATCTACGTGCTCGCCACGTTCCTCTC
AGTCCTCTCGGTCGCCTATGCGCATGGTATGATGTGCACTCCCCGTCAAC
GTGGTGCATACCATACAGATAAGTGCAGCCCTGATATCGACCCTCCAGGC
ATGGACATGAACACCATGGTCCCAGATTTCTGCCCCCACTGTCTCAATGG
CGGTGGTAAAGACACCGTCACATCAAATCTTCCCTCCGAGGGATGGGCAG
TGTATGAACCAACCAAGAACTTCTTCGGCACAGCTACGCGAACTGGCCTG
TGTGGAGATGCTGTCGGAGATAACGCCCATATGCTTGGTGGATCATTCAT
GCCGTATCCAGAGGTTCCGATGGTATCCAAGTGGAAGAAAGGTCAACAGG
TCGACTTTGTCGCCGAGATTGATACCAACCACAACGGCTACCTTGAATTC
TTCATCTGCAACCTCGACGCATGCGGAAAACCTGATCTTGACGCCAGCTG
CTTTGTAAACAACCATTGCGTCAAGCTCGACCGTGTGGCCCACCCGGAGT
GTGAGAATCCATCTGAGGCTACCATCCACGAGTGTGGGCCCATCGATGCC
GCCTACCCAGGACGCTGGTATCTCCCTTGCCGAAACACTGCTCACGTCGG
AGTCCATATCGTTGGTGGTGAGTCCGGAACCATGCGTTATCAACTTCCCG
CTGATCTGGAGTGCAAGCACTGCGTGGTGCAATGGTACTGGGCCACTGCC
AACTCTTGTGCGCCGCGAGGCTTCAAGAACTACTTTGTCAACTACAACTT
TCCGTTTGGCACCACGTGCGACTCTGATGGTGGCGCAAGAGGAACTTACC
GTGCGGATATGGCGGAATGTGGGGGAAGTGCCGTGCCAGAGGAATTTTGG
TCATGTGCTGATGTGCAGATCACTGCAGATGGTTCGGATGCTGGTGCTGT
TCCGGCGCCGTCACTTCCACAGGCCGATTCAGCTGCCACCGAGGACCAAA
CGGGTGCAGTGGAGGATAAAGTTGGAGAGGTAAGTGACCCCGAAATGGAA
ACGGCCGAGACTGCAACTGGTGAAGAAGCGGATACTTCCATGGCTTCCAG
TGAAGAGTCAAGTGATGCCAAGCAAGACGAAGTAGACAGCGACTCGCAGG
ATTGCGTTGCCAACGATGAGCCCTGTGACGGTGGTACACCGTGCTGCGAT
TTACAGAGTGTTTGTGTATACATTGAAAGCGCAGTCGGGTTCAGGTGCCG
CTTCTGGTGGAGCTTGTCTCCAGAATCACGGGGATAA

Coding sequence (CDS) from alignment at tig00000021_pilon:323899..325185+

>Gchil11009.t1 ID=Gchil11009.t1|Name=Gchil11009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000021_pilon:323899..325185+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTTCCACAACTCCACTCATCTACGTGCTCGCCACGTTCCTCTC
AGTCCTCTCGGTCGCCTATGCGCATGGTATGATGTGCACTCCCCGTCAAC
GTGGTGCATACCATACAGATAAGTGCAGCCCTGATATCGACCCTCCAGGC
ATGGACATGAACACCATGGTCCCAGATTTCTGCCCCCACTGTCTCAATGG
CGGTGGTAAAGACACCGTCACATCAAATCTTCCCTCCGAGGGATGGGCAG
TGTATGAACCAACCAAGAACTTCTTCGGCACAGCTACGCGAACTGGCCTG
TGTGGAGATGCTGTCGGAGATAACGCCCATATGCTTGGTGGATCATTCAT
GCCGTATCCAGAGGTTCCGATGGTATCCAAGTGGAAGAAAGGTCAACAGG
TCGACTTTGTCGCCGAGATTGATACCAACCACAACGGCTACCTTGAATTC
TTCATCTGCAACCTCGACGCATGCGGAAAACCTGATCTTGACGCCAGCTG
CTTTGTAAACAACCATTGCGTCAAGCTCGACCGTGTGGCCCACCCGGAGT
GTGAGAATCCATCTGAGGCTACCATCCACGAGTGTGGGCCCATCGATGCC
GCCTACCCAGGACGCTGGTATCTCCCTTGCCGAAACACTGCTCACGTCGG
AGTCCATATCGTTGGTGGTGAGTCCGGAACCATGCGTTATCAACTTCCCG
CTGATCTGGAGTGCAAGCACTGCGTGGTGCAATGGTACTGGGCCACTGCC
AACTCTTGTGCGCCGCGAGGCTTCAAGAACTACTTTGTCAACTACAACTT
TCCGTTTGGCACCACGTGCGACTCTGATGGTGGCGCAAGAGGAACTTACC
GTGCGGATATGGCGGAATGTGGGGGAAGTGCCGTGCCAGAGGAATTTTGG
TCATGTGCTGATGTGCAGATCACTGCAGATGGTTCGGATGCTGGTGCTGT
TCCGGCGCCGTCACTTCCACAGGCCGATTCAGCTGCCACCGAGGACCAAA
CGGGTGCAGTGGAGGATAAAGTTGGAGAGGTAAGTGACCCCGAAATGGAA
ACGGCCGAGACTGCAACTGGTGAAGAAGCGGATACTTCCATGGCTTCCAG
TGAAGAGTCAAGTGATGCCAAGCAAGACGAAGTAGACAGCGACTCGCAGG
ATTGCGTTGCCAACGATGAGCCCTGTGACGGTGGTACACCGTGCTGCGAT
TTACAGAGTGTTTGTGTATACATTGAAAGCGCAGTCGGGTTCAGGTGCCG
CTTCTGGTGGAGCTTGTCTCCAGAATCACGGGGATAA