Gchil11000.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11000.t1
Unique Name	Gchil11000.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:155871..157397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705719.1
Preferred name	DDX25
PFAMs	DEAD,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09097,ko:K18655,ko:K18656
KEGG Pathway	ko04066,ko04934,ko05200,ko05204,ko05211,map04066,map04934,map05200,map05204,map05211
GOs	GO:0000003,GO:0000166,GO:0002181,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005681,GO:0005730,GO:0005737,GO:0005844,GO:0005933,GO:0005934,GO:0006139,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0010556,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016973,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0030154,GO:0030427,GO:0030554,GO:0030587,GO:0030684,GO:0030687,GO:0031090,GO:0031323,GO:0031326,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033391,GO:0034248,GO:0034613,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042623,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044703,GO:0045184,GO:0045495,GO:0046483,GO:0046907,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0060255,GO:0060293,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904,GO:2000112
Evalue	3.82e-177
EggNOG OGs	KOG0332@1\|root,KOG0332@2759\|Eukaryota
EC	3.6.4.13
Description	RNA helicase activity
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11000	Gchil11000	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 155871..157397 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11000.t1.stop1	Gchil11000.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 155871..155873 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11000.t1.CDS1	Gchil11000.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 155871..157397 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11000.t1.exon1	Gchil11000.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 155871..157397 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11000.t1.start1	Gchil11000.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 157395..157397 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11000.t1	Gchil11000.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 155871..157397 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:155871..157397-
coding sequence from alignment at tig00000021_pilon:155871..157397-

mRNA sequence

>Gchil11000.t1 ID=Gchil11000.t1|Name=Gchil11000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MATESDKPVNGEALSDTTPTAPEHYLTDDPSGEKAAEKPADKSSTAAAAA
PTEPSKSAKSAKVEEDWNDPGDELAPNNDPSELFSGIDPGDETSRIQVLQ
ADPSTPYYSANTFEELGLSDELMKGIYHMKFSKPSKIQATSLPMILSPNG
EYKNLIAQAHNGSGKTASFVLGMLSRIDYSIKSTQALCVVPTRELARQIR
DVIISLGKFTRATSALAIKATEEERRQNWAASSSGAINEHILVGTPGKVM
EFIKKRKFSTSTIKILVLDEADEMVDLQNMGDQTIRIKRNLPRDVQVLLF
SATYKDAVRKLATKLAPNANQITIKRETLSLDKVKQYYIDTGNKEERFTI
LSDIYSLLALGQSIIFVRTRHEAHSLTQRLRSGGHTVSVLYGGDMSPEER
DRVIDEFRAGTTRVLITTNVLSRGVDVLAVNAVINYDMPTDRYGSQADPE
TYLHRIGRTGRFGRKGVAINFVYDDRTKAILKELENYYSKTIEKVADVEE
LSERIEHI*

spliced messenger RNA

>Gchil11000.t1 ID=Gchil11000.t1|Name=Gchil11000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000021_pilon:155871..157397- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTGAGTCTGACAAACCGGTGAACGGCGAGGCCCTGTCTGACAC
AACCCCCACTGCTCCGGAGCACTATCTCACGGACGACCCGTCCGGCGAGA
AGGCCGCTGAAAAGCCCGCCGACAAATCCTCGACCGCTGCCGCTGCCGCC
CCCACCGAGCCCTCCAAGTCCGCGAAGTCTGCGAAGGTTGAGGAGGATTG
GAACGACCCGGGGGACGAGCTGGCGCCCAACAATGACCCCTCCGAGCTGT
TTTCCGGCATCGATCCAGGCGACGAAACCTCCCGCATCCAGGTGCTACAG
GCAGACCCTTCCACGCCGTACTACTCGGCGAACACATTCGAGGAGCTCGG
CTTGAGTGATGAGCTCATGAAGGGCATTTATCACATGAAGTTCTCGAAGC
CGTCCAAGATTCAGGCCACTAGCTTACCCATGATTCTGTCGCCGAACGGC
GAGTACAAGAACCTCATAGCGCAAGCTCATAATGGATCGGGCAAGACAGC
GTCTTTTGTGTTGGGTATGTTGTCAAGGATTGACTATTCGATCAAGAGCA
CGCAGGCTCTTTGCGTCGTGCCGACGAGAGAACTTGCCCGCCAGATTCGC
GATGTGATTATATCTCTAGGAAAGTTCACGCGTGCGACGTCTGCGTTGGC
GATAAAGGCCACAGAGGAGGAGCGTCGACAGAATTGGGCCGCTTCTAGTT
CGGGTGCCATAAACGAGCATATTCTGGTGGGCACTCCTGGAAAGGTGATG
GAGTTCATCAAGAAAAGAAAGTTTAGCACCTCCACGATAAAGATTCTCGT
CCTTGATGAGGCGGATGAAATGGTGGATTTGCAGAATATGGGCGATCAAA
CGATTCGCATCAAGCGGAACTTGCCCCGCGATGTGCAAGTGTTATTGTTT
TCCGCTACGTATAAAGACGCGGTAAGGAAGCTGGCCACCAAGCTCGCCCC
GAATGCCAACCAGATTACAATCAAACGAGAAACCTTATCGCTCGATAAAG
TGAAACAGTACTACATCGATACCGGGAACAAGGAAGAGCGCTTCACAATT
CTGTCCGACATTTACTCTTTACTCGCCCTTGGGCAGAGCATCATCTTTGT
GCGCACAAGACACGAGGCTCACTCTCTGACGCAACGGCTGCGGAGCGGAG
GTCATACGGTATCGGTATTGTACGGTGGTGACATGTCACCCGAAGAACGA
GATCGTGTTATTGACGAGTTCCGGGCTGGTACCACTCGAGTGCTCATCAC
CACTAATGTGCTCAGTCGTGGCGTTGATGTGCTGGCTGTGAATGCCGTAA
TCAACTATGATATGCCAACTGACCGGTACGGATCGCAAGCGGACCCGGAA
ACATATTTGCACAGGATTGGACGAACCGGGCGCTTTGGACGTAAGGGAGT
CGCCATCAACTTTGTGTATGACGATCGCACGAAAGCGATTCTGAAGGAAC
TGGAGAATTACTATTCGAAGACTATTGAAAAGGTTGCAGATGTCGAAGAA
CTTTCTGAAAGAATTGAACACATATAA

protein sequence of Gchil11000.t1

>Gchil11000.t1 ID=Gchil11000.t1|Name=Gchil11000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MATESDKPVNGEALSDTTPTAPEHYLTDDPSGEKAAEKPADKSSTAAAAA
PTEPSKSAKSAKVEEDWNDPGDELAPNNDPSELFSGIDPGDETSRIQVLQ
ADPSTPYYSANTFEELGLSDELMKGIYHMKFSKPSKIQATSLPMILSPNG
EYKNLIAQAHNGSGKTASFVLGMLSRIDYSIKSTQALCVVPTRELARQIR
DVIISLGKFTRATSALAIKATEEERRQNWAASSSGAINEHILVGTPGKVM
EFIKKRKFSTSTIKILVLDEADEMVDLQNMGDQTIRIKRNLPRDVQVLLF
SATYKDAVRKLATKLAPNANQITIKRETLSLDKVKQYYIDTGNKEERFTI
LSDIYSLLALGQSIIFVRTRHEAHSLTQRLRSGGHTVSVLYGGDMSPEER
DRVIDEFRAGTTRVLITTNVLSRGVDVLAVNAVINYDMPTDRYGSQADPE
TYLHRIGRTGRFGRKGVAINFVYDDRTKAILKELENYYSKTIEKVADVEE
LSERIEHI*

mRNA from alignment at tig00000021_pilon:155871..157397-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11000.t1 ID=Gchil11000.t1|Name=Gchil11000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000021_pilon:155871..157397- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACTGAGTCTGACAAACCGGTGAACGGCGAGGCCCTGTCTGACAC
AACCCCCACTGCTCCGGAGCACTATCTCACGGACGACCCGTCCGGCGAGA
AGGCCGCTGAAAAGCCCGCCGACAAATCCTCGACCGCTGCCGCTGCCGCC
CCCACCGAGCCCTCCAAGTCCGCGAAGTCTGCGAAGGTTGAGGAGGATTG
GAACGACCCGGGGGACGAGCTGGCGCCCAACAATGACCCCTCCGAGCTGT
TTTCCGGCATCGATCCAGGCGACGAAACCTCCCGCATCCAGGTGCTACAG
GCAGACCCTTCCACGCCGTACTACTCGGCGAACACATTCGAGGAGCTCGG
CTTGAGTGATGAGCTCATGAAGGGCATTTATCACATGAAGTTCTCGAAGC
CGTCCAAGATTCAGGCCACTAGCTTACCCATGATTCTGTCGCCGAACGGC
GAGTACAAGAACCTCATAGCGCAAGCTCATAATGGATCGGGCAAGACAGC
GTCTTTTGTGTTGGGTATGTTGTCAAGGATTGACTATTCGATCAAGAGCA
CGCAGGCTCTTTGCGTCGTGCCGACGAGAGAACTTGCCCGCCAGATTCGC
GATGTGATTATATCTCTAGGAAAGTTCACGCGTGCGACGTCTGCGTTGGC
GATAAAGGCCACAGAGGAGGAGCGTCGACAGAATTGGGCCGCTTCTAGTT
CGGGTGCCATAAACGAGCATATTCTGGTGGGCACTCCTGGAAAGGTGATG
GAGTTCATCAAGAAAAGAAAGTTTAGCACCTCCACGATAAAGATTCTCGT
CCTTGATGAGGCGGATGAAATGGTGGATTTGCAGAATATGGGCGATCAAA
CGATTCGCATCAAGCGGAACTTGCCCCGCGATGTGCAAGTGTTATTGTTT
TCCGCTACGTATAAAGACGCGGTAAGGAAGCTGGCCACCAAGCTCGCCCC
GAATGCCAACCAGATTACAATCAAACGAGAAACCTTATCGCTCGATAAAG
TGAAACAGTACTACATCGATACCGGGAACAAGGAAGAGCGCTTCACAATT
CTGTCCGACATTTACTCTTTACTCGCCCTTGGGCAGAGCATCATCTTTGT
GCGCACAAGACACGAGGCTCACTCTCTGACGCAACGGCTGCGGAGCGGAG
GTCATACGGTATCGGTATTGTACGGTGGTGACATGTCACCCGAAGAACGA
GATCGTGTTATTGACGAGTTCCGGGCTGGTACCACTCGAGTGCTCATCAC
CACTAATGTGCTCAGTCGTGGCGTTGATGTGCTGGCTGTGAATGCCGTAA
TCAACTATGATATGCCAACTGACCGGTACGGATCGCAAGCGGACCCGGAA
ACATATTTGCACAGGATTGGACGAACCGGGCGCTTTGGACGTAAGGGAGT
CGCCATCAACTTTGTGTATGACGATCGCACGAAAGCGATTCTGAAGGAAC
TGGAGAATTACTATTCGAAGACTATTGAAAAGGTTGCAGATGTCGAAGAA
CTTTCTGAAAGAATTGAACACATATAA

Coding sequence (CDS) from alignment at tig00000021_pilon:155871..157397-

>Gchil11000.t1 ID=Gchil11000.t1|Name=Gchil11000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000021_pilon:155871..157397- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACTGAGTCTGACAAACCGGTGAACGGCGAGGCCCTGTCTGACAC
AACCCCCACTGCTCCGGAGCACTATCTCACGGACGACCCGTCCGGCGAGA
AGGCCGCTGAAAAGCCCGCCGACAAATCCTCGACCGCTGCCGCTGCCGCC
CCCACCGAGCCCTCCAAGTCCGCGAAGTCTGCGAAGGTTGAGGAGGATTG
GAACGACCCGGGGGACGAGCTGGCGCCCAACAATGACCCCTCCGAGCTGT
TTTCCGGCATCGATCCAGGCGACGAAACCTCCCGCATCCAGGTGCTACAG
GCAGACCCTTCCACGCCGTACTACTCGGCGAACACATTCGAGGAGCTCGG
CTTGAGTGATGAGCTCATGAAGGGCATTTATCACATGAAGTTCTCGAAGC
CGTCCAAGATTCAGGCCACTAGCTTACCCATGATTCTGTCGCCGAACGGC
GAGTACAAGAACCTCATAGCGCAAGCTCATAATGGATCGGGCAAGACAGC
GTCTTTTGTGTTGGGTATGTTGTCAAGGATTGACTATTCGATCAAGAGCA
CGCAGGCTCTTTGCGTCGTGCCGACGAGAGAACTTGCCCGCCAGATTCGC
GATGTGATTATATCTCTAGGAAAGTTCACGCGTGCGACGTCTGCGTTGGC
GATAAAGGCCACAGAGGAGGAGCGTCGACAGAATTGGGCCGCTTCTAGTT
CGGGTGCCATAAACGAGCATATTCTGGTGGGCACTCCTGGAAAGGTGATG
GAGTTCATCAAGAAAAGAAAGTTTAGCACCTCCACGATAAAGATTCTCGT
CCTTGATGAGGCGGATGAAATGGTGGATTTGCAGAATATGGGCGATCAAA
CGATTCGCATCAAGCGGAACTTGCCCCGCGATGTGCAAGTGTTATTGTTT
TCCGCTACGTATAAAGACGCGGTAAGGAAGCTGGCCACCAAGCTCGCCCC
GAATGCCAACCAGATTACAATCAAACGAGAAACCTTATCGCTCGATAAAG
TGAAACAGTACTACATCGATACCGGGAACAAGGAAGAGCGCTTCACAATT
CTGTCCGACATTTACTCTTTACTCGCCCTTGGGCAGAGCATCATCTTTGT
GCGCACAAGACACGAGGCTCACTCTCTGACGCAACGGCTGCGGAGCGGAG
GTCATACGGTATCGGTATTGTACGGTGGTGACATGTCACCCGAAGAACGA
GATCGTGTTATTGACGAGTTCCGGGCTGGTACCACTCGAGTGCTCATCAC
CACTAATGTGCTCAGTCGTGGCGTTGATGTGCTGGCTGTGAATGCCGTAA
TCAACTATGATATGCCAACTGACCGGTACGGATCGCAAGCGGACCCGGAA
ACATATTTGCACAGGATTGGACGAACCGGGCGCTTTGGACGTAAGGGAGT
CGCCATCAACTTTGTGTATGACGATCGCACGAAAGCGATTCTGAAGGAAC
TGGAGAATTACTATTCGAAGACTATTGAAAAGGTTGCAGATGTCGAAGAA
CTTTCTGAAAGAATTGAACACATATAA