Gchil10991.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10991.t1
Unique NameGchil10991.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:114287..115059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10991Gchil10991Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 114287..115059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1Gchil10991.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 114287..115059 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1.start1Gchil10991.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 114287..114289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1.CDS1Gchil10991.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 114287..114539 +
Gchil10991.t1.CDS2Gchil10991.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 114638..115059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1.exon1Gchil10991.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 114287..114539 +
Gchil10991.t1.exon2Gchil10991.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 114638..115059 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1.intron1Gchil10991.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 114540..114637 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10991.t1.stop1Gchil10991.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 115057..115059 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10991.t1 ID=Gchil10991.t1|Name=Gchil10991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=225bp
MSTLENVVMDIRRELCNVASNLHDACATSENVKHSPEHPAEHPNEALHNR
ETISTGNGLPPQAEDTPRNSKAMREEIKALPEGNRNDEALNIPANKPNPA
GEAGHKICTQLAADNGPILRELGPNMRDRKAQARTPLCTAELAPTPQEAL
EKQPILLYFAGIRRGPIRPYCKALSSHVVAGRTIGILFLSRGVGEFIKSK
KLPTEWWWQRESLATNITPTSTPS*
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spliced messenger RNA

>Gchil10991.t1 ID=Gchil10991.t1|Name=Gchil10991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000021_pilon:114287..115059+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACATTAGAGAACGTCGTAATGGATATCCGGCGAGAACTATGCAA
CGTTGCCAGCAACCTGCATGACGCATGCGCCACGTCTGAAAACGTCAAAC
ACTCGCCAGAACATCCTGCAGAACATCCTAACGAAGCACTTCATAACCGC
GAAACCATCTCGACCGGTAACGGCCTCCCCCCGCAAGCTGAAGACACTCC
GCGGAACAGCAAAGCAATGCGCGAAGAAATCAAGGCGCTGCCCGAGGGAA
ACCGAAATGACGAGGCACTGAACATTCCCGCCAACAAACCCAACCCGGCC
GGAGAGGCAGGCCACAAAATCTGCACTCAACTTGCAGCCGACAATGGCCC
CATACTCCGCGAACTAGGACCCAACATGCGTGATCGAAAAGCTCAAGCAA
GGACCCCCCTATGCACAGCTGAACTTGCTCCAACCCCACAAGAGGCCCTT
GAGAAACAGCCAATCTTGCTATACTTCGCAGGCATCCGCCGAGGCCCAAT
CCGCCCGTACTGCAAAGCCCTGTCCTCTCATGTAGTCGCTGGTAGAACCA
TTGGGATCCTCTTTCTCAGCCGCGGCGTCGGCGAATTCATAAAGTCCAAA
AAATTGCCGACGGAGTGGTGGTGGCAACGCGAGTCCCTGGCTACAAATAT
CACCCCAACCTCGACCCCATCATGa
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protein sequence of Gchil10991.t1

>Gchil10991.t1 ID=Gchil10991.t1|Name=Gchil10991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=225bp
MSTLENVVMDIRRELCNVASNLHDACATSENVKHSPEHPAEHPNEALHNR
ETISTGNGLPPQAEDTPRNSKAMREEIKALPEGNRNDEALNIPANKPNPA
GEAGHKICTQLAADNGPILRELGPNMRDRKAQARTPLCTAELAPTPQEAL
EKQPILLYFAGIRRGPIRPYCKALSSHVVAGRTIGILFLSRGVGEFIKSK
KLPTEWWWQRESLATNITPTSTPS*
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mRNA from alignment at tig00000021_pilon:114287..115059+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10991.t1 ID=Gchil10991.t1|Name=Gchil10991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=773bp|location=Sequence derived from alignment at tig00000021_pilon:114287..115059+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACATTAGAGAACGTCGTAATGGATATCCGGCGAGAACTATGCAA
CGTTGCCAGCAACCTGCATGACGCATGCGCCACGTCTGAAAACGTCAAAC
ACTCGCCAGAACATCCTGCAGAACATCCTAACGAAGCACTTCATAACCGC
GAAACCATCTCGACCGGTAACGGCCTCCCCCCGCAAGCTGAAGACACTCC
GCGGAACAGCAAAGCAATGCGCGAAGAAATCAAGGCGCTGCCCGAGGGAA
ACCGTCCCCTGCTCAAACACAAAGCGCAGCTCTGGAGACAAGCACACCTG
GGCCAGACAGGGAACCAGTAAAACACGAACAAAAGACGTCTACATCGCCA
GGAAATGACGAGGCACTGAACATTCCCGCCAACAAACCCAACCCGGCCGG
AGAGGCAGGCCACAAAATCTGCACTCAACTTGCAGCCGACAATGGCCCCA
TACTCCGCGAACTAGGACCCAACATGCGTGATCGAAAAGCTCAAGCAAGG
ACCCCCCTATGCACAGCTGAACTTGCTCCAACCCCACAAGAGGCCCTTGA
GAAACAGCCAATCTTGCTATACTTCGCAGGCATCCGCCGAGGCCCAATCC
GCCCGTACTGCAAAGCCCTGTCCTCTCATGTAGTCGCTGGTAGAACCATT
GGGATCCTCTTTCTCAGCCGCGGCGTCGGCGAATTCATAAAGTCCAAAAA
ATTGCCGACGGAGTGGTGGTGGCAACGCGAGTCCCTGGCTACAAATATCA
CCCCAACCTCGACCCCATCATGa
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Coding sequence (CDS) from alignment at tig00000021_pilon:114287..115059+

>Gchil10991.t1 ID=Gchil10991.t1|Name=Gchil10991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000021_pilon:114287..115059+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACATTAGAGAACGTCGTAATGGATATCCGGCGAGAACTATGCAA
CGTTGCCAGCAACCTGCATGACGCATGCGCCACGTCTGAAAACGTCAAAC
ACTCGCCAGAACATCCTGCAGAACATCCTAACGAAGCACTTCATAACCGC
GAAACCATCTCGACCGGTAACGGCCTCCCCCCGCAAGCTGAAGACACTCC
GCGGAACAGCAAAGCAATGCGCGAAGAAATCAAGGCGCTGCCCGAGGGAA
ACCGAAATGACGAGGCACTGAACATTCCCGCCAACAAACCCAACCCGGCC
GGAGAGGCAGGCCACAAAATCTGCACTCAACTTGCAGCCGACAATGGCCC
CATACTCCGCGAACTAGGACCCAACATGCGTGATCGAAAAGCTCAAGCAA
GGACCCCCCTATGCACAGCTGAACTTGCTCCAACCCCACAAGAGGCCCTT
GAGAAACAGCCAATCTTGCTATACTTCGCAGGCATCCGCCGAGGCCCAAT
CCGCCCGTACTGCAAAGCCCTGTCCTCTCATGTAGTCGCTGGTAGAACCA
TTGGGATCCTCTTTCTCAGCCGCGGCGTCGGCGAATTCATAAAGTCCAAA
AAATTGCCGACGGAGTGGTGGTGGCAACGCGAGTCCCTGGCTACAAATAT
CACCCCAACCTCGACCCCATCATGa
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