Gchil10814.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10814.t1
Unique NameGchil10814.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:1506283..1506689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703880.1
Preferred nameRPL37
PFAMsRibosomal_L37e
Max annot lvl2759|Eukaryota
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K02922,ko:K06269,ko:K07891,ko:K09557
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko03010,ko03015,ko04022,ko04024,ko04113,ko04114,ko04144,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map03010,map03015,map04022,map04024,map04113,map04114,map04144,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
KEGG ModuleM00135,M00177,M00179
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.12e-44
EggNOG OGsCOG2126@1|root,KOG3475@2759|Eukaryota
EC1.2.1.3,3.1.3.16
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03019,ko03021,ko03041,ko03110,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10814Gchil10814Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 1506283..1506689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1Gchil10814.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 1506283..1506689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1.CDS1Gchil10814.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1506283..1506285 +
Gchil10814.t1.CDS2Gchil10814.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1506417..1506689 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1.exon1Gchil10814.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1506283..1506285 +
Gchil10814.t1.exon2Gchil10814.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1506417..1506689 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1.start1Gchil10814.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 1506283..1506285 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1.intron1Gchil10814.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 1506286..1506416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10814.t1.stop1Gchil10814.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 1506687..1506689 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10814.t1 ID=Gchil10814.t1|Name=Gchil10814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=92bp
MTKGTSSFGKRTSKTHTLCVRCGRRSYHIQKKQCASCGYPCAKKRTYNWS
TKSKRRRTTGTGRLRHLRHMPRRFKNGFREGTVAQKVTSVA*
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spliced messenger RNA

>Gchil10814.t1 ID=Gchil10814.t1|Name=Gchil10814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000138_pilon:1506283..1506689+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAGGAACGTCAAGTTTCGGAAAGCGCACTAGCAAAACGCACAC
CCTCTGCGTGCGATGTGGAAGACGATCATACCATATTCAGAAGAAGCAGT
GTGCTTCCTGCGGATACCCATGCGCGAAGAAGAGGACCTACAACTGGTCA
ACCAAGTCAAAGAGGAGGCGTACTACCGGCACCGGTCGCCTTCGCCATCT
GCGACATATGCCTCGTCGCTTCAAGAACGGCTTCCGCGAGGGTACAGTCG
CCCAGAAGGTCACCTCTGTGGCCTAG
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protein sequence of Gchil10814.t1

>Gchil10814.t1 ID=Gchil10814.t1|Name=Gchil10814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=92bp
MTKGTSSFGKRTSKTHTLCVRCGRRSYHIQKKQCASCGYPCAKKRTYNWS
TKSKRRRTTGTGRLRHLRHMPRRFKNGFREGTVAQKVTSVA*
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mRNA from alignment at tig00000138_pilon:1506283..1506689+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10814.t1 ID=Gchil10814.t1|Name=Gchil10814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=407bp|location=Sequence derived from alignment at tig00000138_pilon:1506283..1506689+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGTTGACTCGGATCTTTGCCGTTAACATGCACGTGCGCGCCGCA
CTACGAGGGGCTATGGCTAACGAACAAACACTTGTTACCCTGGAACTCGG
CCCGTTGCCCTCATCTTCAACCATAACTCTGTAGACAAAAGGAACGTCAA
GTTTCGGAAAGCGCACTAGCAAAACGCACACCCTCTGCGTGCGATGTGGA
AGACGATCATACCATATTCAGAAGAAGCAGTGTGCTTCCTGCGGATACCC
ATGCGCGAAGAAGAGGACCTACAACTGGTCAACCAAGTCAAAGAGGAGGC
GTACTACCGGCACCGGTCGCCTTCGCCATCTGCGACATATGCCTCGTCGC
TTCAAGAACGGCTTCCGCGAGGGTACAGTCGCCCAGAAGGTCACCTCTGT
GGCCTAG
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Coding sequence (CDS) from alignment at tig00000138_pilon:1506283..1506689+

>Gchil10814.t1 ID=Gchil10814.t1|Name=Gchil10814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000138_pilon:1506283..1506689+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAAAGGAACGTCAAGTTTCGGAAAGCGCACTAGCAAAACGCACAC
CCTCTGCGTGCGATGTGGAAGACGATCATACCATATTCAGAAGAAGCAGT
GTGCTTCCTGCGGATACCCATGCGCGAAGAAGAGGACCTACAACTGGTCA
ACCAAGTCAAAGAGGAGGCGTACTACCGGCACCGGTCGCCTTCGCCATCT
GCGACATATGCCTCGTCGCTTCAAGAACGGCTTCCGCGAGGGTACAGTCG
CCCAGAAGGTCACCTCTGTGGCCTAG
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