Gchil10807.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10807.t1
Unique NameGchil10807.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:1454409..1455365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706258.1
Preferred nameRIB3
PFAMsDHBP_synthase,GTP_cyclohydro2
Max annot lvl2759|Eukaryota
KEGG rclassRC00293,RC01792,RC01815,RC02504
KEGG koko:K02858,ko:K14652
KEGG ReactionR00425,R07281
KEGG Pathwayko00740,ko00790,ko01100,ko01110,map00740,map00790,map01100,map01110
KEGG ModuleM00125,M00840
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0008686,GO:0009058,GO:0009060,GO:0009110,GO:0009231,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0015980,GO:0016020,GO:0016787,GO:0016810,GO:0016814,GO:0016829,GO:0016830,GO:0017144,GO:0018130,GO:0019238,GO:0031012,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0055114,GO:0062039,GO:0062040,GO:0070013,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue2.05e-61
EggNOG OGsCOG0807@1|root,KOG1284@2759|Eukaryota
EC3.5.4.25,4.1.99.12
Description3,4-dihydroxy-2-butanone-4-phosphate synthase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10807Gchil10807Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 1454409..1455365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1Gchil10807.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 1454409..1455365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1.stop1Gchil10807.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 1454409..1454411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1.CDS1Gchil10807.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1454409..1454645 -
Gchil10807.t1.CDS2Gchil10807.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1454775..1455365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1.exon1Gchil10807.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1454409..1454645 -
Gchil10807.t1.exon2Gchil10807.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1454775..1455365 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1.intron1Gchil10807.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 1454646..1454774 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10807.t1.start1Gchil10807.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 1455363..1455365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10807.t1 ID=Gchil10807.t1|Name=Gchil10807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MESNTSGAQGATFFGGSLPKSPLPSFYIHLVSPDGWCFGRESVEAALKAI
AQVKIIVVTDDDNSENKGDHIIAADNVTPEAIAVMIRYTSGVIRCAAEVQ
HLERIHLQHMVANNTDPKNRAFNIICNFRHRTSTSISPTDFAKTLPAPAD
PQSHPDSFQRPMHIFPLRYRDSGVLERAGHTEAFEDVSRLALCPLVGENL
VTQIAGTSAHLPTRNGGLDALAYRPVLDDVDYFGIVVSGGYDPQNPRFDG
PVVVKVEFEWCTEDIFGSLLCDFGP*
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spliced messenger RNA

>Gchil10807.t1 ID=Gchil10807.t1|Name=Gchil10807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000138_pilon:1454409..1455365- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCAACACTAGCGGAGCCCAGGGGGCTACCTTCTTCGGTGGCTC
GCTGCCCAAGTCACCTTTACCATCCTTTTACATCCATTTAGTCTCTCCAG
ATGGCTGGTGTTTCGGGCGCGAGTCCGTAGAGGCTGCTCTAAAAGCCATA
GCTCAAGTCAAAATCATCGTCGTCACTGATGATGATAATAGCGAAAATAA
GGGTGATCACATCATCGCGGCGGATAACGTCACACCCGAAGCCATTGCGG
TCATGATTCGTTACACCTCTGGAGTCATTCGCTGCGCGGCGGAGGTGCAA
CATCTCGAACGTATTCATCTTCAACACATGGTCGCGAACAATACGGATCC
CAAGAATAGAGCATTCAATATCATATGTAACTTCAGACACAGAACCTCAA
CGAGTATCTCTCCCACCGATTTTGCAAAAACACTGCCTGCGCCGGCGGAT
CCTCAATCTCACCCGGACAGTTTTCAACGACCAATGCACATCTTCCCGTT
GCGTTACCGTGACAGTGGTGTGCTTGAACGCGCTGGGCACACGGAGGCCT
TTGAGGATGTTTCCCGATTGGCTTTGTGCCCTCTTGTTGGAGAAAATCTC
GTAACTCAAATTGCAGGCACTTCTGCCCACCTACCCACACGCAATGGAGG
TTTGGACGCCTTAGCATACCGTCCAGTGCTTGACGATGTTGACTATTTTG
GCATTGTAGTGAGTGGCGGGTATGATCCACAAAATCCTAGGTTCGACGGC
CCTGTTGTGGTTAAGGTCGAGTTTGAGTGGTGCACAGAAGATATTTTTGG
GTCCTTGTTGTGCGATTTTGGTCCTTAA
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protein sequence of Gchil10807.t1

>Gchil10807.t1 ID=Gchil10807.t1|Name=Gchil10807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MESNTSGAQGATFFGGSLPKSPLPSFYIHLVSPDGWCFGRESVEAALKAI
AQVKIIVVTDDDNSENKGDHIIAADNVTPEAIAVMIRYTSGVIRCAAEVQ
HLERIHLQHMVANNTDPKNRAFNIICNFRHRTSTSISPTDFAKTLPAPAD
PQSHPDSFQRPMHIFPLRYRDSGVLERAGHTEAFEDVSRLALCPLVGENL
VTQIAGTSAHLPTRNGGLDALAYRPVLDDVDYFGIVVSGGYDPQNPRFDG
PVVVKVEFEWCTEDIFGSLLCDFGP*
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mRNA from alignment at tig00000138_pilon:1454409..1455365-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10807.t1 ID=Gchil10807.t1|Name=Gchil10807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000138_pilon:1454409..1455365- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCCAACACTAGCGGAGCCCAGGGGGCTACCTTCTTCGGTGGCTC
GCTGCCCAAGTCACCTTTACCATCCTTTTACATCCATTTAGTCTCTCCAG
ATGGCTGGTGTTTCGGGCGCGAGTCCGTAGAGGCTGCTCTAAAAGCCATA
GCTCAAGTCAAAATCATCGTCGTCACTGATGATGATAATAGCGAAAATAA
GGGTGATCACATCATCGCGGCGGATAACGTCACACCCGAAGCCATTGCGG
TCATGATTCGTTACACCTCTGGAGTCATTCGCTGCGCGGCGGAGGTGCAA
CATCTCGAACGTATTCATCTTCAACACATGGTCGCGAACAATACGGATCC
CAAGAATAGAGCATTCAATATCATATGTAACTTCAGACACAGAACCTCAA
CGAGTATCTCTCCCACCGATTTTGCAAAAACACTGCCTGCGCCGGCGGAT
CCTCAATCTCACCCGGACAGTTTTCAACGACCAATGCACATCTTCCCGTT
GCGTTACCGTGACAGTGGTGTGCTTGAACGCGCTGGGCACACGGAGGCCT
TTGAGGATGTTTCCCGATTGGCTTTGTGCCCTCTTGTTGGAGTCCTATAG
GAGTTTGTCAATGAAAGCGACAGGTCGATCGCTCGCCTTTCCCAGTTACG
AAAGTAAACAGAACAACACGGGATTATCCTCAATTCCATTTCTGATTTCT
TCAAATACCGCCGAATGCAGGAAAATCTCGTAACTCAAATTGCAGGCACT
TCTGCCCACCTACCCACACGCAATGGAGGTTTGGACGCCTTAGCATACCG
TCCAGTGCTTGACGATGTTGACTATTTTGGCATTGTAGTGAGTGGCGGGT
ATGATCCACAAAATCCTAGGTTCGACGGCCCTGTTGTGGTTAAGGTCGAG
TTTGAGTGGTGCACAGAAGATATTTTTGGGTCCTTGTTGTGCGATTTTGG
TCCTTAA
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Coding sequence (CDS) from alignment at tig00000138_pilon:1454409..1455365-

>Gchil10807.t1 ID=Gchil10807.t1|Name=Gchil10807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000138_pilon:1454409..1455365- (Gracilaria chilensis NLEC103_M9 male)
ATGGAATCCAACACTAGCGGAGCCCAGGGGGCTACCTTCTTCGGTGGCTC
GCTGCCCAAGTCACCTTTACCATCCTTTTACATCCATTTAGTCTCTCCAG
ATGGCTGGTGTTTCGGGCGCGAGTCCGTAGAGGCTGCTCTAAAAGCCATA
GCTCAAGTCAAAATCATCGTCGTCACTGATGATGATAATAGCGAAAATAA
GGGTGATCACATCATCGCGGCGGATAACGTCACACCCGAAGCCATTGCGG
TCATGATTCGTTACACCTCTGGAGTCATTCGCTGCGCGGCGGAGGTGCAA
CATCTCGAACGTATTCATCTTCAACACATGGTCGCGAACAATACGGATCC
CAAGAATAGAGCATTCAATATCATATGTAACTTCAGACACAGAACCTCAA
CGAGTATCTCTCCCACCGATTTTGCAAAAACACTGCCTGCGCCGGCGGAT
CCTCAATCTCACCCGGACAGTTTTCAACGACCAATGCACATCTTCCCGTT
GCGTTACCGTGACAGTGGTGTGCTTGAACGCGCTGGGCACACGGAGGCCT
TTGAGGATGTTTCCCGATTGGCTTTGTGCCCTCTTGTTGGAGAAAATCTC
GTAACTCAAATTGCAGGCACTTCTGCCCACCTACCCACACGCAATGGAGG
TTTGGACGCCTTAGCATACCGTCCAGTGCTTGACGATGTTGACTATTTTG
GCATTGTAGTGAGTGGCGGGTATGATCCACAAAATCCTAGGTTCGACGGC
CCTGTTGTGGTTAAGGTCGAGTTTGAGTGGTGCACAGAAGATATTTTTGG
GTCCTTGTTGTGCGATTTTGGTCCTTAA
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