Gchil10803.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10803.t1
Unique Name	Gchil10803.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:1228816..1230427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703819.1
PFAMs	Glyco_transf_90
Max annot lvl	2759\|Eukaryota
Evalue	1.96e-19
EggNOG OGs	KOG2458@1\|root,KOG2458@2759\|Eukaryota
Description	glucosyltransferase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10803	Gchil10803	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 1228816..1230427 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1	Gchil10803.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 1228816..1230427 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1.start1	Gchil10803.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 1228816..1228818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1.CDS1	Gchil10803.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 1228816..1230031 +
Gchil10803.t1.CDS2	Gchil10803.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 1230117..1230427 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1.exon1	Gchil10803.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 1228816..1230031 +
Gchil10803.t1.exon2	Gchil10803.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 1230117..1230427 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1.intron1	Gchil10803.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00000138_pilon 1230032..1230116 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10803.t1.stop1	Gchil10803.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 1230425..1230427 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:1228816..1230427+
coding sequence from alignment at tig00000138_pilon:1228816..1230427+

mRNA sequence

>Gchil10803.t1 ID=Gchil10803.t1|Name=Gchil10803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MQRPLLLRPKIVKYNQQQLRRFSSNAKWLTTLRKHQDFKMPSSRRKKSNA
SRSTRWINSVILSISIVLFIATLFTRGKGLDTLSQLPDLTLTSFSFTPAN
DSLIEEANNHNDHSKNTVSREKREDKGLPDNGFKSRGLDKRGVDEHLTTI
RQDWAGVIDSFLDGTSASDFSARNIREHYEANVNNVHDTCILVQILEGNV
TFTEKYHGKRHGRASSAKYIIKKLVRQKGGSMPGATFLVMVTDGHKPKVA
SFGSARHWKNWKLMIPVPLGNERGVREGWGTPLEGWDAYIDRTVLSTHQN
YAWESKREKALFRGALAMQTYKLGTCNSENDARCERAKKWNEINRGVLYE
KTKKRTDLVDIGFTSLKQKENGDNKQFEGAPEVKESMKFTEYQNYKYVLN
VGSNQDWAERLRSLLFLNSAVIHHVAESQEFFTPLMRPWVHFIPTNIYFD
DLIENIEWAKKNDDFIRQLVRNQNAFADRYISERSMQQYWEVAIEKFAAL
QAQAAGET*

spliced messenger RNA

>Gchil10803.t1 ID=Gchil10803.t1|Name=Gchil10803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000138_pilon:1228816..1230427+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGACCCCTGCTTCTGAGACCAAAGATCGTCAAATACAACCAGCA
GCAGTTGAGACGTTTTTCATCTAACGCAAAGTGGTTAACAACCCTTCGAA
AACACCAAGATTTCAAAATGCCGTCTTCACGCCGCAAGAAGTCAAACGCT
TCTCGTTCAACTCGTTGGATAAATAGTGTCATTCTATCCATATCTATTGT
GTTGTTCATCGCAACTTTGTTCACCAGAGGAAAGGGATTGGATACACTTT
CGCAGCTTCCAGACTTAACGTTAACTTCATTTTCCTTCACACCCGCCAAT
GACTCTCTGATCGAAGAGGCCAACAACCACAATGACCACTCAAAGAATAC
CGTTTCCAGAGAGAAAAGGGAAGACAAAGGCCTTCCGGACAATGGTTTCA
AGTCAAGGGGACTGGATAAACGCGGGGTTGATGAACACCTGACTACCATT
CGGCAAGACTGGGCTGGTGTGATTGATTCGTTTCTGGACGGCACATCTGC
ATCAGATTTCTCAGCAAGGAATATTCGAGAGCACTATGAAGCAAATGTGA
ATAACGTACATGATACTTGTATTCTAGTTCAAATTCTAGAGGGAAACGTT
ACCTTCACAGAGAAGTACCATGGTAAGCGTCATGGTAGAGCTTCTTCTGC
AAAATACATTATCAAGAAGCTTGTGCGGCAGAAGGGTGGCTCAATGCCAG
GTGCCACATTTCTTGTTATGGTTACTGATGGTCATAAGCCGAAAGTCGCA
TCTTTCGGTTCCGCAAGGCATTGGAAGAACTGGAAGCTAATGATTCCCGT
GCCGCTTGGAAACGAAAGAGGTGTTCGTGAAGGATGGGGTACACCGCTGG
AAGGATGGGATGCGTACATTGACAGAACTGTTTTGTCCACACATCAAAAC
TATGCCTGGGAATCCAAGCGGGAAAAAGCTTTGTTTCGTGGCGCTCTTGC
CATGCAGACGTATAAGCTGGGCACCTGTAATAGTGAAAATGACGCCAGGT
GTGAACGAGCAAAGAAATGGAATGAGATTAATAGGGGTGTTTTGTACGAA
AAGACAAAGAAGAGGACGGATCTGGTTGATATTGGATTCACCTCTCTTAA
GCAAAAAGAAAACGGAGATAACAAACAGTTTGAGGGGGCACCAGAGGTTA
AGGAATCGATGAAGTTTACGGAATATCAGAATTACAAATATGTGCTGAAT
GTGGGGAGTAATCAAGATTGGGCAGAGAGACTGCGTTCGTTGCTTTTCCT
CAACAGTGCGGTTATACATCACGTTGCAGAATCACAAGAGTTTTTCACGC
CTTTAATGAGGCCATGGGTGCACTTCATACCAACCAACATTTACTTTGAT
GACCTTATTGAAAATATTGAATGGGCCAAGAAGAATGACGACTTTATAAG
GCAACTTGTACGCAATCAGAATGCATTTGCCGACCGATACATCTCAGAAA
GGTCGATGCAACAGTATTGGGAGGTGGCTATTGAAAAATTTGCAGCGCTT
CAAGCTCAAGCCGCTGGTGAGACCTAG

protein sequence of Gchil10803.t1

>Gchil10803.t1 ID=Gchil10803.t1|Name=Gchil10803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MQRPLLLRPKIVKYNQQQLRRFSSNAKWLTTLRKHQDFKMPSSRRKKSNA
SRSTRWINSVILSISIVLFIATLFTRGKGLDTLSQLPDLTLTSFSFTPAN
DSLIEEANNHNDHSKNTVSREKREDKGLPDNGFKSRGLDKRGVDEHLTTI
RQDWAGVIDSFLDGTSASDFSARNIREHYEANVNNVHDTCILVQILEGNV
TFTEKYHGKRHGRASSAKYIIKKLVRQKGGSMPGATFLVMVTDGHKPKVA
SFGSARHWKNWKLMIPVPLGNERGVREGWGTPLEGWDAYIDRTVLSTHQN
YAWESKREKALFRGALAMQTYKLGTCNSENDARCERAKKWNEINRGVLYE
KTKKRTDLVDIGFTSLKQKENGDNKQFEGAPEVKESMKFTEYQNYKYVLN
VGSNQDWAERLRSLLFLNSAVIHHVAESQEFFTPLMRPWVHFIPTNIYFD
DLIENIEWAKKNDDFIRQLVRNQNAFADRYISERSMQQYWEVAIEKFAAL
QAQAAGET*

mRNA from alignment at tig00000138_pilon:1228816..1230427+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10803.t1 ID=Gchil10803.t1|Name=Gchil10803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1612bp|location=Sequence derived from alignment at tig00000138_pilon:1228816..1230427+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACCCCTGCTTCTGAGACCAAAGATCGTCAAATACAACCAGCA
GCAGTTGAGACGTTTTTCATCTAACGCAAAGTGGTTAACAACCCTTCGAA
AACACCAAGATTTCAAAATGCCGTCTTCACGCCGCAAGAAGTCAAACGCT
TCTCGTTCAACTCGTTGGATAAATAGTGTCATTCTATCCATATCTATTGT
GTTGTTCATCGCAACTTTGTTCACCAGAGGAAAGGGATTGGATACACTTT
CGCAGCTTCCAGACTTAACGTTAACTTCATTTTCCTTCACACCCGCCAAT
GACTCTCTGATCGAAGAGGCCAACAACCACAATGACCACTCAAAGAATAC
CGTTTCCAGAGAGAAAAGGGAAGACAAAGGCCTTCCGGACAATGGTTTCA
AGTCAAGGGGACTGGATAAACGCGGGGTTGATGAACACCTGACTACCATT
CGGCAAGACTGGGCTGGTGTGATTGATTCGTTTCTGGACGGCACATCTGC
ATCAGATTTCTCAGCAAGGAATATTCGAGAGCACTATGAAGCAAATGTGA
ATAACGTACATGATACTTGTATTCTAGTTCAAATTCTAGAGGGAAACGTT
ACCTTCACAGAGAAGTACCATGGTAAGCGTCATGGTAGAGCTTCTTCTGC
AAAATACATTATCAAGAAGCTTGTGCGGCAGAAGGGTGGCTCAATGCCAG
GTGCCACATTTCTTGTTATGGTTACTGATGGTCATAAGCCGAAAGTCGCA
TCTTTCGGTTCCGCAAGGCATTGGAAGAACTGGAAGCTAATGATTCCCGT
GCCGCTTGGAAACGAAAGAGGTGTTCGTGAAGGATGGGGTACACCGCTGG
AAGGATGGGATGCGTACATTGACAGAACTGTTTTGTCCACACATCAAAAC
TATGCCTGGGAATCCAAGCGGGAAAAAGCTTTGTTTCGTGGCGCTCTTGC
CATGCAGACGTATAAGCTGGGCACCTGTAATAGTGAAAATGACGCCAGGT
GTGAACGAGCAAAGAAATGGAATGAGATTAATAGGGGTGTTTTGTACGAA
AAGACAAAGAAGAGGACGGATCTGGTTGATATTGGATTCACCTCTCTTAA
GCAAAAAGAAAACGGAGATAACAAACAGTTTGAGGGGGCACCAGAGGTTA
AGGAATCGATGAAGTTTACGGAATATCAGAATTACAAATATGTGCTGAAT
GTGGGGAGTAATCAAGGTAATTTTCTTTCGTCTTCTGTTCTTTGCGATGG
TTGTTGCGTTGAATACGTATATCTAACTTTTTTTTCCCTTTTGGTTTGTA
GATTGGGCAGAGAGACTGCGTTCGTTGCTTTTCCTCAACAGTGCGGTTAT
ACATCACGTTGCAGAATCACAAGAGTTTTTCACGCCTTTAATGAGGCCAT
GGGTGCACTTCATACCAACCAACATTTACTTTGATGACCTTATTGAAAAT
ATTGAATGGGCCAAGAAGAATGACGACTTTATAAGGCAACTTGTACGCAA
TCAGAATGCATTTGCCGACCGATACATCTCAGAAAGGTCGATGCAACAGT
ATTGGGAGGTGGCTATTGAAAAATTTGCAGCGCTTCAAGCTCAAGCCGCT
GGTGAGACCTAG

Coding sequence (CDS) from alignment at tig00000138_pilon:1228816..1230427+

>Gchil10803.t1 ID=Gchil10803.t1|Name=Gchil10803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000138_pilon:1228816..1230427+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACCCCTGCTTCTGAGACCAAAGATCGTCAAATACAACCAGCA
GCAGTTGAGACGTTTTTCATCTAACGCAAAGTGGTTAACAACCCTTCGAA
AACACCAAGATTTCAAAATGCCGTCTTCACGCCGCAAGAAGTCAAACGCT
TCTCGTTCAACTCGTTGGATAAATAGTGTCATTCTATCCATATCTATTGT
GTTGTTCATCGCAACTTTGTTCACCAGAGGAAAGGGATTGGATACACTTT
CGCAGCTTCCAGACTTAACGTTAACTTCATTTTCCTTCACACCCGCCAAT
GACTCTCTGATCGAAGAGGCCAACAACCACAATGACCACTCAAAGAATAC
CGTTTCCAGAGAGAAAAGGGAAGACAAAGGCCTTCCGGACAATGGTTTCA
AGTCAAGGGGACTGGATAAACGCGGGGTTGATGAACACCTGACTACCATT
CGGCAAGACTGGGCTGGTGTGATTGATTCGTTTCTGGACGGCACATCTGC
ATCAGATTTCTCAGCAAGGAATATTCGAGAGCACTATGAAGCAAATGTGA
ATAACGTACATGATACTTGTATTCTAGTTCAAATTCTAGAGGGAAACGTT
ACCTTCACAGAGAAGTACCATGGTAAGCGTCATGGTAGAGCTTCTTCTGC
AAAATACATTATCAAGAAGCTTGTGCGGCAGAAGGGTGGCTCAATGCCAG
GTGCCACATTTCTTGTTATGGTTACTGATGGTCATAAGCCGAAAGTCGCA
TCTTTCGGTTCCGCAAGGCATTGGAAGAACTGGAAGCTAATGATTCCCGT
GCCGCTTGGAAACGAAAGAGGTGTTCGTGAAGGATGGGGTACACCGCTGG
AAGGATGGGATGCGTACATTGACAGAACTGTTTTGTCCACACATCAAAAC
TATGCCTGGGAATCCAAGCGGGAAAAAGCTTTGTTTCGTGGCGCTCTTGC
CATGCAGACGTATAAGCTGGGCACCTGTAATAGTGAAAATGACGCCAGGT
GTGAACGAGCAAAGAAATGGAATGAGATTAATAGGGGTGTTTTGTACGAA
AAGACAAAGAAGAGGACGGATCTGGTTGATATTGGATTCACCTCTCTTAA
GCAAAAAGAAAACGGAGATAACAAACAGTTTGAGGGGGCACCAGAGGTTA
AGGAATCGATGAAGTTTACGGAATATCAGAATTACAAATATGTGCTGAAT
GTGGGGAGTAATCAAGATTGGGCAGAGAGACTGCGTTCGTTGCTTTTCCT
CAACAGTGCGGTTATACATCACGTTGCAGAATCACAAGAGTTTTTCACGC
CTTTAATGAGGCCATGGGTGCACTTCATACCAACCAACATTTACTTTGAT
GACCTTATTGAAAATATTGAATGGGCCAAGAAGAATGACGACTTTATAAG
GCAACTTGTACGCAATCAGAATGCATTTGCCGACCGATACATCTCAGAAA
GGTCGATGCAACAGTATTGGGAGGTGGCTATTGAAAAATTTGCAGCGCTT
CAAGCTCAAGCCGCTGGTGAGACCTAG