Gchil10798.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10798.t1
Unique NameGchil10798.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:1215484..1216546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog120017.I2G0U6
Preferred namessb2
PFAMsRPA_C,tRNA_anti-codon
Max annot lvl4751|Fungi
KEGG koko:K10739
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006269,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007127,GO:0007131,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010833,GO:0016043,GO:0016070,GO:0016567,GO:0018130,GO:0019438,GO:0019538,GO:0022402,GO:0022414,GO:0030491,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032446,GO:0032508,GO:0032774,GO:0032991,GO:0032993,GO:0033036,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045184,GO:0046483,GO:0048285,GO:0050896,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051716,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902295,GO:1902318,GO:1902969,GO:1902981,GO:1903046,GO:1903047
Evalue1.16e-15
EggNOG OGsCOG5235@1|root,KOG3108@2759|Eukaryota,38FC9@33154|Opisthokonta,3P0CR@4751|Fungi,3V1EB@5204|Basidiomycota,3N1SV@452284|Ustilaginomycotina
DescriptionReplication protein A C terminal
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10798Gchil10798Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 1215484..1216546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1Gchil10798.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 1215484..1216546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1.stop1Gchil10798.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 1215484..1215486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1.CDS1Gchil10798.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1215484..1216394 -
Gchil10798.t1.CDS2Gchil10798.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1216519..1216546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1.exon1Gchil10798.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1215484..1216394 -
Gchil10798.t1.exon2Gchil10798.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1216519..1216546 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1.intron1Gchil10798.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 1216395..1216518 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10798.t1.start1Gchil10798.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 1216544..1216546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10798.t1 ID=Gchil10798.t1|Name=Gchil10798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp
MAYGQQPYDANNGPGFGGPAYGANPGYGYAPPANNPQPQPYNSYSQPAAG
YMPASQTNNDDSSFASETLQPLTVKQLLNAAPDPSDPSKLTVNSATLTQL
TLVARIVAADVQVTTITLTVDDCTATIQGTYVLPVEDEMAPNEISLQKRA
WIKTGAWLRLVAAPYVQPASRSLTVYRVRRVTDFNEILYHRLQVVQTLLA
QTRQAVPGANSASAVPSAYHATVPVAYQPENSNAHAADDDLAMNPLQRVV
YDYVRSRKDNVQRGVTVDEVTRHAAAAHGATAPTVKAILDGFASDGHMYT
TIDEHHYAFCRL*
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spliced messenger RNA

>Gchil10798.t1 ID=Gchil10798.t1|Name=Gchil10798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000138_pilon:1215484..1216546- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTACGGTCAGCAGCCCTACGATGCCAATAATGGCCCCGGTTTCGG
CGGCCCCGCATACGGCGCAAACCCCGGATACGGCTACGCCCCTCCCGCCA
ACAACCCCCAGCCCCAGCCCTATAACAGCTACTCTCAGCCCGCGGCCGGC
TACATGCCCGCCTCGCAAACAAACAACGACGACTCGAGTTTCGCCTCCGA
AACCTTGCAACCGCTTACCGTCAAGCAGCTTCTCAACGCCGCTCCCGATC
CGTCGGACCCCTCCAAGCTCACCGTCAATTCCGCCACCCTCACCCAGCTC
ACCCTTGTCGCCCGCATTGTCGCCGCCGACGTGCAGGTCACCACGATCAC
CCTCACCGTCGATGACTGCACCGCTACTATTCAGGGTACTTATGTGTTGC
CGGTGGAGGACGAGATGGCCCCCAATGAGATCTCCCTACAGAAGCGCGCC
TGGATCAAGACAGGTGCCTGGTTGCGTCTTGTCGCCGCCCCATATGTGCA
ACCTGCCTCACGTTCATTGACTGTATACCGCGTCCGACGCGTCACAGATT
TTAACGAGATCTTGTACCATCGCTTGCAAGTTGTGCAAACCTTGCTCGCT
CAAACCCGTCAAGCCGTCCCCGGTGCAAACTCCGCCTCTGCCGTTCCGTC
CGCCTATCACGCAACTGTCCCCGTTGCATACCAGCCTGAGAACAGCAACG
CACATGCAGCCGATGACGATCTGGCCATGAACCCGCTGCAAAGAGTCGTC
TATGATTATGTCCGCTCAAGGAAGGACAATGTGCAGCGGGGCGTCACCGT
GGACGAAGTAACGCGACACGCGGCCGCTGCTCACGGCGCAACTGCACCCA
CTGTCAAAGCAATCCTCGACGGCTTCGCTTCCGATGGCCACATGTACACC
ACCATCGATGAACACCATTACGCATTCTGTCGTCTTTAA
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protein sequence of Gchil10798.t1

>Gchil10798.t1 ID=Gchil10798.t1|Name=Gchil10798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=313bp
MAYGQQPYDANNGPGFGGPAYGANPGYGYAPPANNPQPQPYNSYSQPAAG
YMPASQTNNDDSSFASETLQPLTVKQLLNAAPDPSDPSKLTVNSATLTQL
TLVARIVAADVQVTTITLTVDDCTATIQGTYVLPVEDEMAPNEISLQKRA
WIKTGAWLRLVAAPYVQPASRSLTVYRVRRVTDFNEILYHRLQVVQTLLA
QTRQAVPGANSASAVPSAYHATVPVAYQPENSNAHAADDDLAMNPLQRVV
YDYVRSRKDNVQRGVTVDEVTRHAAAAHGATAPTVKAILDGFASDGHMYT
TIDEHHYAFCRL*
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mRNA from alignment at tig00000138_pilon:1215484..1216546-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10798.t1 ID=Gchil10798.t1|Name=Gchil10798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1063bp|location=Sequence derived from alignment at tig00000138_pilon:1215484..1216546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTACGGTCAGCAGCCCTACGATGGTACGTTTACCTTCGCGCCGCC
GCCACGCCGCCGCCACACCTCACGCCCCGCCCCCGGTCCCGCCTGCCACA
ACCACTCACCACCCTCTCCCCTCTTTCTGTCTCTCTTCCTCCCGCGACGC
AGCCAATAATGGCCCCGGTTTCGGCGGCCCCGCATACGGCGCAAACCCCG
GATACGGCTACGCCCCTCCCGCCAACAACCCCCAGCCCCAGCCCTATAAC
AGCTACTCTCAGCCCGCGGCCGGCTACATGCCCGCCTCGCAAACAAACAA
CGACGACTCGAGTTTCGCCTCCGAAACCTTGCAACCGCTTACCGTCAAGC
AGCTTCTCAACGCCGCTCCCGATCCGTCGGACCCCTCCAAGCTCACCGTC
AATTCCGCCACCCTCACCCAGCTCACCCTTGTCGCCCGCATTGTCGCCGC
CGACGTGCAGGTCACCACGATCACCCTCACCGTCGATGACTGCACCGCTA
CTATTCAGGGTACTTATGTGTTGCCGGTGGAGGACGAGATGGCCCCCAAT
GAGATCTCCCTACAGAAGCGCGCCTGGATCAAGACAGGTGCCTGGTTGCG
TCTTGTCGCCGCCCCATATGTGCAACCTGCCTCACGTTCATTGACTGTAT
ACCGCGTCCGACGCGTCACAGATTTTAACGAGATCTTGTACCATCGCTTG
CAAGTTGTGCAAACCTTGCTCGCTCAAACCCGTCAAGCCGTCCCCGGTGC
AAACTCCGCCTCTGCCGTTCCGTCCGCCTATCACGCAACTGTCCCCGTTG
CATACCAGCCTGAGAACAGCAACGCACATGCAGCCGATGACGATCTGGCC
ATGAACCCGCTGCAAAGAGTCGTCTATGATTATGTCCGCTCAAGGAAGGA
CAATGTGCAGCGGGGCGTCACCGTGGACGAAGTAACGCGACACGCGGCCG
CTGCTCACGGCGCAACTGCACCCACTGTCAAAGCAATCCTCGACGGCTTC
GCTTCCGATGGCCACATGTACACCACCATCGATGAACACCATTACGCATT
CTGTCGTCTTTAA
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Coding sequence (CDS) from alignment at tig00000138_pilon:1215484..1216546-

>Gchil10798.t1 ID=Gchil10798.t1|Name=Gchil10798.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000138_pilon:1215484..1216546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTACGGTCAGCAGCCCTACGATGCCAATAATGGCCCCGGTTTCGG
CGGCCCCGCATACGGCGCAAACCCCGGATACGGCTACGCCCCTCCCGCCA
ACAACCCCCAGCCCCAGCCCTATAACAGCTACTCTCAGCCCGCGGCCGGC
TACATGCCCGCCTCGCAAACAAACAACGACGACTCGAGTTTCGCCTCCGA
AACCTTGCAACCGCTTACCGTCAAGCAGCTTCTCAACGCCGCTCCCGATC
CGTCGGACCCCTCCAAGCTCACCGTCAATTCCGCCACCCTCACCCAGCTC
ACCCTTGTCGCCCGCATTGTCGCCGCCGACGTGCAGGTCACCACGATCAC
CCTCACCGTCGATGACTGCACCGCTACTATTCAGGGTACTTATGTGTTGC
CGGTGGAGGACGAGATGGCCCCCAATGAGATCTCCCTACAGAAGCGCGCC
TGGATCAAGACAGGTGCCTGGTTGCGTCTTGTCGCCGCCCCATATGTGCA
ACCTGCCTCACGTTCATTGACTGTATACCGCGTCCGACGCGTCACAGATT
TTAACGAGATCTTGTACCATCGCTTGCAAGTTGTGCAAACCTTGCTCGCT
CAAACCCGTCAAGCCGTCCCCGGTGCAAACTCCGCCTCTGCCGTTCCGTC
CGCCTATCACGCAACTGTCCCCGTTGCATACCAGCCTGAGAACAGCAACG
CACATGCAGCCGATGACGATCTGGCCATGAACCCGCTGCAAAGAGTCGTC
TATGATTATGTCCGCTCAAGGAAGGACAATGTGCAGCGGGGCGTCACCGT
GGACGAAGTAACGCGACACGCGGCCGCTGCTCACGGCGCAACTGCACCCA
CTGTCAAAGCAATCCTCGACGGCTTCGCTTCCGATGGCCACATGTACACC
ACCATCGATGAACACCATTACGCATTCTGTCGTCTTTAA
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