Gchil10797.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10797.t1
Unique NameGchil10797.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length70
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:1214598..1214898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10797Gchil10797Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 1214598..1214898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1Gchil10797.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 1214598..1214898 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1.stop1Gchil10797.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 1214598..1214600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1.CDS1Gchil10797.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1214598..1214696 -
Gchil10797.t1.CDS2Gchil10797.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1214788..1214898 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1.exon1Gchil10797.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1214598..1214696 -
Gchil10797.t1.exon2Gchil10797.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1214788..1214898 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1.intron1Gchil10797.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 1214697..1214787 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10797.t1.start1Gchil10797.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 1214896..1214898 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10797.t1 ID=Gchil10797.t1|Name=Gchil10797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=70bp
MRRADKVGLLLATSAVGIYFYTMHHYKRQAPGDLERTEPLPPSQEALERM
KEESSSTTPLDAAVPVPNN*
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spliced messenger RNA

>Gchil10797.t1 ID=Gchil10797.t1|Name=Gchil10797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=210bp|location=Sequence derived from alignment at tig00000138_pilon:1214598..1214898- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGGGCCGATAAGGTCGGGTTACTGTTGGCCACTTCGGCAGTTGG
CATCTACTTCTATACCATGCATCACTACAAGCGCCAAGCGCCTGGAGATC
TGGAACGCACGGAGCCGCTACCACCCTCACAAGAGGCTCTGGAGCGGATG
AAGGAAGAATCATCTTCGACAACGCCACTTGATGCAGCTGTCCCAGTCCC
GAACAACTAA
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protein sequence of Gchil10797.t1

>Gchil10797.t1 ID=Gchil10797.t1|Name=Gchil10797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=70bp
MRRADKVGLLLATSAVGIYFYTMHHYKRQAPGDLERTEPLPPSQEALERM
KEESSSTTPLDAAVPVPNN*
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mRNA from alignment at tig00000138_pilon:1214598..1214898-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10797.t1 ID=Gchil10797.t1|Name=Gchil10797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=301bp|location=Sequence derived from alignment at tig00000138_pilon:1214598..1214898- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAGGGCCGATAAGGTCGGGTTACTGTTGGCCACTTCGGCAGTTGG
CATCTACTTCTATACCATGCATCACTACAAGCGCCAAGCGCCTGGAGATC
TGGAACGCACGGTAAGTGACTCCAATCACCGTTGGAAATGCGCATGCCCA
TTTAAAACTCACTGATTTCCTCGCATGTGATTCAAACCGATTCGCCCGTC
AGGAGCCGCTACCACCCTCACAAGAGGCTCTGGAGCGGATGAAGGAAGAA
TCATCTTCGACAACGCCACTTGATGCAGCTGTCCCAGTCCCGAACAACTA
A
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Coding sequence (CDS) from alignment at tig00000138_pilon:1214598..1214898-

>Gchil10797.t1 ID=Gchil10797.t1|Name=Gchil10797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=210bp|location=Sequence derived from alignment at tig00000138_pilon:1214598..1214898- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAGGGCCGATAAGGTCGGGTTACTGTTGGCCACTTCGGCAGTTGG
CATCTACTTCTATACCATGCATCACTACAAGCGCCAAGCGCCTGGAGATC
TGGAACGCACGGAGCCGCTACCACCCTCACAAGAGGCTCTGGAGCGGATG
AAGGAAGAATCATCTTCGACAACGCCACTTGATGCAGCTGTCCCAGTCCC
GAACAACTAA
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