Gchil10795.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10795.t1
Unique NameGchil10795.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:1211726..1213075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702562.1
PFAMsIPPT
Max annot lvl2759|Eukaryota
KEGG rclassRC02820
KEGG koko:K00791
KEGG ReactionR01122
KEGG Pathwayko00908,ko01100,ko01110,map00908,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue1.83e-94
EggNOG OGsCOG0324@1|root,KOG1384@2759|Eukaryota
EC2.5.1.75
DescriptionCatalyzes the transfer of a dimethylallyl group onto the adenine at position 37
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01006,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10795Gchil10795Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 1211726..1213075 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10795.t1.stop1Gchil10795.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 1211726..1211728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10795.t1.CDS1Gchil10795.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 1211726..1213075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10795.t1.exon1Gchil10795.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 1211726..1213075 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10795.t1.start1Gchil10795.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 1213073..1213075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10795.t1Gchil10795.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 1211726..1213075 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10795.t1 ID=Gchil10795.t1|Name=Gchil10795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp
MSNATCTENAVSLSRPKVLVIAGPTAVGKSAAALKLCQQLQGEIISADSV
QLYKCLNVGANKATEEERALVPHHLIDIADPAHDDFTAGDFFRAAREKVD
QVMKRGHLPVVVGGTMMYVRWLVYGRPATPPVDENVKNRVKEALSRVHDD
WEAGLALLAKLDPKRAAALSRNDWYRLGRALEIVESTGTPMTDMPLRGGA
PRTQYSSDALDYDFRCVFLYDDRIPLNRRIDARCEEMILPPENGTVEKQG
ECFVKDSILTEVSYLLLSRELRIVPPSPAFAIGYRQTIAYLTKRALEKQR
CESPEAENAGEGANPSSDAIAAFRSFLEGFQSATRGYAKEQLKWFRREKL
FHWIKTGSNVEESLRNILCADEIEYEQFRREHESDQIEKREDCIEQGKDM
KRYATEKKWLIHGSIAEKTAILSAERCALELADSLGTRELAEIQGIITH*
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spliced messenger RNA

>Gchil10795.t1 ID=Gchil10795.t1|Name=Gchil10795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000138_pilon:1211726..1213075- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAACGCAACGTGTACTGAGAACGCAGTTTCGCTGTCGAGGCCGAA
GGTGCTGGTTATAGCAGGCCCCACAGCAGTCGGAAAGTCCGCAGCAGCAC
TAAAACTCTGTCAACAGTTACAGGGCGAAATTATTTCAGCTGATTCGGTT
CAACTATACAAATGCCTAAATGTCGGTGCAAACAAAGCAACAGAAGAAGA
ACGAGCGTTGGTTCCGCATCATTTGATTGATATTGCCGACCCAGCCCATG
ATGATTTTACAGCCGGTGACTTTTTTAGAGCTGCCAGAGAGAAAGTAGAT
CAAGTGATGAAGCGAGGTCATCTCCCCGTCGTCGTTGGCGGTACTATGAT
GTATGTGCGATGGCTCGTCTATGGACGCCCTGCAACGCCGCCTGTGGATG
AAAACGTTAAGAATAGGGTTAAGGAGGCTCTAAGCAGAGTGCATGATGAC
TGGGAAGCCGGTCTTGCGCTTTTGGCTAAACTTGATCCGAAACGCGCAGC
CGCTCTTTCAAGAAACGACTGGTATCGCTTAGGGCGAGCGTTGGAAATCG
TTGAATCTACCGGCACCCCAATGACAGATATGCCACTACGAGGTGGAGCT
CCTCGAACCCAGTACTCGAGCGATGCTCTGGATTACGATTTTCGATGTGT
GTTCTTGTACGACGATCGAATACCTTTGAACAGAAGAATTGATGCGCGAT
GCGAAGAGATGATACTTCCGCCAGAAAACGGAACGGTGGAGAAGCAGGGT
GAATGTTTTGTCAAAGATAGTATCTTGACGGAAGTTTCCTATCTACTTCT
TTCCCGAGAGTTGCGTATAGTGCCACCATCACCTGCATTTGCGATTGGAT
ACCGTCAGACGATAGCATATCTCACAAAAAGAGCACTTGAAAAGCAGAGA
TGCGAGTCACCAGAGGCTGAAAATGCAGGCGAGGGTGCTAATCCTTCATC
AGATGCTATTGCTGCCTTTCGTTCTTTTCTTGAAGGATTTCAATCTGCAA
CCCGAGGATATGCAAAGGAGCAGTTGAAATGGTTCCGCAGGGAAAAGCTG
TTCCATTGGATAAAAACTGGTTCTAACGTAGAGGAGTCGTTGAGGAACAT
TCTGTGCGCAGACGAAATCGAGTATGAGCAATTTCGAAGAGAACATGAAT
CTGATCAAATAGAAAAAAGGGAGGATTGTATAGAGCAAGGCAAAGATATG
AAACGTTATGCAACCGAGAAAAAGTGGTTGATTCACGGTAGCATAGCTGA
AAAGACAGCAATTCTTTCTGCAGAACGATGTGCCTTAGAACTTGCAGATT
CTTTAGGCACAAGAGAGCTTGCAGAAATACAAGGCATCATCACCCATTGA
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protein sequence of Gchil10795.t1

>Gchil10795.t1 ID=Gchil10795.t1|Name=Gchil10795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=450bp
MSNATCTENAVSLSRPKVLVIAGPTAVGKSAAALKLCQQLQGEIISADSV
QLYKCLNVGANKATEEERALVPHHLIDIADPAHDDFTAGDFFRAAREKVD
QVMKRGHLPVVVGGTMMYVRWLVYGRPATPPVDENVKNRVKEALSRVHDD
WEAGLALLAKLDPKRAAALSRNDWYRLGRALEIVESTGTPMTDMPLRGGA
PRTQYSSDALDYDFRCVFLYDDRIPLNRRIDARCEEMILPPENGTVEKQG
ECFVKDSILTEVSYLLLSRELRIVPPSPAFAIGYRQTIAYLTKRALEKQR
CESPEAENAGEGANPSSDAIAAFRSFLEGFQSATRGYAKEQLKWFRREKL
FHWIKTGSNVEESLRNILCADEIEYEQFRREHESDQIEKREDCIEQGKDM
KRYATEKKWLIHGSIAEKTAILSAERCALELADSLGTRELAEIQGIITH*
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mRNA from alignment at tig00000138_pilon:1211726..1213075-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10795.t1 ID=Gchil10795.t1|Name=Gchil10795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000138_pilon:1211726..1213075- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAACGCAACGTGTACTGAGAACGCAGTTTCGCTGTCGAGGCCGAA
GGTGCTGGTTATAGCAGGCCCCACAGCAGTCGGAAAGTCCGCAGCAGCAC
TAAAACTCTGTCAACAGTTACAGGGCGAAATTATTTCAGCTGATTCGGTT
CAACTATACAAATGCCTAAATGTCGGTGCAAACAAAGCAACAGAAGAAGA
ACGAGCGTTGGTTCCGCATCATTTGATTGATATTGCCGACCCAGCCCATG
ATGATTTTACAGCCGGTGACTTTTTTAGAGCTGCCAGAGAGAAAGTAGAT
CAAGTGATGAAGCGAGGTCATCTCCCCGTCGTCGTTGGCGGTACTATGAT
GTATGTGCGATGGCTCGTCTATGGACGCCCTGCAACGCCGCCTGTGGATG
AAAACGTTAAGAATAGGGTTAAGGAGGCTCTAAGCAGAGTGCATGATGAC
TGGGAAGCCGGTCTTGCGCTTTTGGCTAAACTTGATCCGAAACGCGCAGC
CGCTCTTTCAAGAAACGACTGGTATCGCTTAGGGCGAGCGTTGGAAATCG
TTGAATCTACCGGCACCCCAATGACAGATATGCCACTACGAGGTGGAGCT
CCTCGAACCCAGTACTCGAGCGATGCTCTGGATTACGATTTTCGATGTGT
GTTCTTGTACGACGATCGAATACCTTTGAACAGAAGAATTGATGCGCGAT
GCGAAGAGATGATACTTCCGCCAGAAAACGGAACGGTGGAGAAGCAGGGT
GAATGTTTTGTCAAAGATAGTATCTTGACGGAAGTTTCCTATCTACTTCT
TTCCCGAGAGTTGCGTATAGTGCCACCATCACCTGCATTTGCGATTGGAT
ACCGTCAGACGATAGCATATCTCACAAAAAGAGCACTTGAAAAGCAGAGA
TGCGAGTCACCAGAGGCTGAAAATGCAGGCGAGGGTGCTAATCCTTCATC
AGATGCTATTGCTGCCTTTCGTTCTTTTCTTGAAGGATTTCAATCTGCAA
CCCGAGGATATGCAAAGGAGCAGTTGAAATGGTTCCGCAGGGAAAAGCTG
TTCCATTGGATAAAAACTGGTTCTAACGTAGAGGAGTCGTTGAGGAACAT
TCTGTGCGCAGACGAAATCGAGTATGAGCAATTTCGAAGAGAACATGAAT
CTGATCAAATAGAAAAAAGGGAGGATTGTATAGAGCAAGGCAAAGATATG
AAACGTTATGCAACCGAGAAAAAGTGGTTGATTCACGGTAGCATAGCTGA
AAAGACAGCAATTCTTTCTGCAGAACGATGTGCCTTAGAACTTGCAGATT
CTTTAGGCACAAGAGAGCTTGCAGAAATACAAGGCATCATCACCCATTGA
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Coding sequence (CDS) from alignment at tig00000138_pilon:1211726..1213075-

>Gchil10795.t1 ID=Gchil10795.t1|Name=Gchil10795.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000138_pilon:1211726..1213075- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAACGCAACGTGTACTGAGAACGCAGTTTCGCTGTCGAGGCCGAA
GGTGCTGGTTATAGCAGGCCCCACAGCAGTCGGAAAGTCCGCAGCAGCAC
TAAAACTCTGTCAACAGTTACAGGGCGAAATTATTTCAGCTGATTCGGTT
CAACTATACAAATGCCTAAATGTCGGTGCAAACAAAGCAACAGAAGAAGA
ACGAGCGTTGGTTCCGCATCATTTGATTGATATTGCCGACCCAGCCCATG
ATGATTTTACAGCCGGTGACTTTTTTAGAGCTGCCAGAGAGAAAGTAGAT
CAAGTGATGAAGCGAGGTCATCTCCCCGTCGTCGTTGGCGGTACTATGAT
GTATGTGCGATGGCTCGTCTATGGACGCCCTGCAACGCCGCCTGTGGATG
AAAACGTTAAGAATAGGGTTAAGGAGGCTCTAAGCAGAGTGCATGATGAC
TGGGAAGCCGGTCTTGCGCTTTTGGCTAAACTTGATCCGAAACGCGCAGC
CGCTCTTTCAAGAAACGACTGGTATCGCTTAGGGCGAGCGTTGGAAATCG
TTGAATCTACCGGCACCCCAATGACAGATATGCCACTACGAGGTGGAGCT
CCTCGAACCCAGTACTCGAGCGATGCTCTGGATTACGATTTTCGATGTGT
GTTCTTGTACGACGATCGAATACCTTTGAACAGAAGAATTGATGCGCGAT
GCGAAGAGATGATACTTCCGCCAGAAAACGGAACGGTGGAGAAGCAGGGT
GAATGTTTTGTCAAAGATAGTATCTTGACGGAAGTTTCCTATCTACTTCT
TTCCCGAGAGTTGCGTATAGTGCCACCATCACCTGCATTTGCGATTGGAT
ACCGTCAGACGATAGCATATCTCACAAAAAGAGCACTTGAAAAGCAGAGA
TGCGAGTCACCAGAGGCTGAAAATGCAGGCGAGGGTGCTAATCCTTCATC
AGATGCTATTGCTGCCTTTCGTTCTTTTCTTGAAGGATTTCAATCTGCAA
CCCGAGGATATGCAAAGGAGCAGTTGAAATGGTTCCGCAGGGAAAAGCTG
TTCCATTGGATAAAAACTGGTTCTAACGTAGAGGAGTCGTTGAGGAACAT
TCTGTGCGCAGACGAAATCGAGTATGAGCAATTTCGAAGAGAACATGAAT
CTGATCAAATAGAAAAAAGGGAGGATTGTATAGAGCAAGGCAAAGATATG
AAACGTTATGCAACCGAGAAAAAGTGGTTGATTCACGGTAGCATAGCTGA
AAAGACAGCAATTCTTTCTGCAGAACGATGTGCCTTAGAACTTGCAGATT
CTTTAGGCACAAGAGAGCTTGCAGAAATACAAGGCATCATCACCCATTGA
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