Gchil10691.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10691.t1
Unique NameGchil10691.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:120903..121505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005103466.1
Preferred nameRPAIN
PFAMsRPA_interact_C,RPA_interact_M,RPA_interact_N
Max annot lvl33208|Metazoa
GOsGO:0001650,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0015031,GO:0015833,GO:0016604,GO:0016605,GO:0017038,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045184,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0090304,GO:1901360,GO:1901576
Evalue7.77e-09
EggNOG OGs2C8FC@1|root,2R0QT@2759|Eukaryota,39SXM@33154|Opisthokonta,3BKGT@33208|Metazoa,3CTDP@33213|Bilateria
Descriptionprotein import into nucleus
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10691Gchil10691Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 120903..121505 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10691.t1.stop1Gchil10691.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 120903..120905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10691.t1.CDS1Gchil10691.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 120903..121505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10691.t1.exon1Gchil10691.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 120903..121505 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10691.t1.start1Gchil10691.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 121503..121505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10691.t1Gchil10691.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 120903..121505 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10691.t1 ID=Gchil10691.t1|Name=Gchil10691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp
MAPPDEWRQRLLKHCLHRMKSDRDDEMHNRRRARLKIIEEEVARLNPERS
YLSDNDLETFIADLEAAMDAERREAEMRLIESEEQMIQDFERLGKEQAQQ
DSELFAFHEHNDDTDSTKVLCPVCERGKLYVREGVVFCRCGVRIDGGTYD
NLTSEMVKQRLEHVFAQHAHCGSSPKFELRHMFGTFLWATCRCGEDFIVF
*
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spliced messenger RNA

>Gchil10691.t1 ID=Gchil10691.t1|Name=Gchil10691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000138_pilon:120903..121505- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCCGGACGAGTGGCGTCAGCGGCTGCTCAAACATTGTTTACA
TAGAATGAAGTCCGACAGGGATGACGAGATGCATAATCGCCGAAGAGCCC
GATTGAAAATCATTGAGGAGGAAGTCGCTCGCTTAAATCCGGAAAGGAGT
TACCTGTCGGACAACGATTTGGAAACGTTCATTGCAGACCTAGAAGCCGC
GATGGACGCTGAAAGGCGAGAGGCAGAGATGCGTCTAATAGAGTCTGAAG
AACAGATGATTCAAGACTTCGAACGACTCGGAAAAGAACAAGCGCAACAA
GATTCCGAGCTCTTTGCGTTTCATGAGCACAATGACGACACTGATTCAAC
CAAGGTGCTATGCCCCGTGTGTGAACGTGGAAAGCTTTATGTTAGGGAAG
GAGTAGTGTTTTGTAGATGTGGCGTTCGAATAGATGGTGGAACTTACGAT
AATCTGACTAGCGAAATGGTGAAGCAACGCCTTGAGCACGTGTTCGCGCA
ACATGCACATTGCGGAAGCTCACCAAAGTTTGAGCTTCGCCACATGTTTG
GAACATTTCTATGGGCTACTTGCCGCTGCGGAGAGGATTTCATTGTGTTT
TAA
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protein sequence of Gchil10691.t1

>Gchil10691.t1 ID=Gchil10691.t1|Name=Gchil10691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=201bp
MAPPDEWRQRLLKHCLHRMKSDRDDEMHNRRRARLKIIEEEVARLNPERS
YLSDNDLETFIADLEAAMDAERREAEMRLIESEEQMIQDFERLGKEQAQQ
DSELFAFHEHNDDTDSTKVLCPVCERGKLYVREGVVFCRCGVRIDGGTYD
NLTSEMVKQRLEHVFAQHAHCGSSPKFELRHMFGTFLWATCRCGEDFIVF
*
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mRNA from alignment at tig00000138_pilon:120903..121505-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10691.t1 ID=Gchil10691.t1|Name=Gchil10691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000138_pilon:120903..121505- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGCCGGACGAGTGGCGTCAGCGGCTGCTCAAACATTGTTTACA
TAGAATGAAGTCCGACAGGGATGACGAGATGCATAATCGCCGAAGAGCCC
GATTGAAAATCATTGAGGAGGAAGTCGCTCGCTTAAATCCGGAAAGGAGT
TACCTGTCGGACAACGATTTGGAAACGTTCATTGCAGACCTAGAAGCCGC
GATGGACGCTGAAAGGCGAGAGGCAGAGATGCGTCTAATAGAGTCTGAAG
AACAGATGATTCAAGACTTCGAACGACTCGGAAAAGAACAAGCGCAACAA
GATTCCGAGCTCTTTGCGTTTCATGAGCACAATGACGACACTGATTCAAC
CAAGGTGCTATGCCCCGTGTGTGAACGTGGAAAGCTTTATGTTAGGGAAG
GAGTAGTGTTTTGTAGATGTGGCGTTCGAATAGATGGTGGAACTTACGAT
AATCTGACTAGCGAAATGGTGAAGCAACGCCTTGAGCACGTGTTCGCGCA
ACATGCACATTGCGGAAGCTCACCAAAGTTTGAGCTTCGCCACATGTTTG
GAACATTTCTATGGGCTACTTGCCGCTGCGGAGAGGATTTCATTGTGTTT
TAA
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Coding sequence (CDS) from alignment at tig00000138_pilon:120903..121505-

>Gchil10691.t1 ID=Gchil10691.t1|Name=Gchil10691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000138_pilon:120903..121505- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGCCGGACGAGTGGCGTCAGCGGCTGCTCAAACATTGTTTACA
TAGAATGAAGTCCGACAGGGATGACGAGATGCATAATCGCCGAAGAGCCC
GATTGAAAATCATTGAGGAGGAAGTCGCTCGCTTAAATCCGGAAAGGAGT
TACCTGTCGGACAACGATTTGGAAACGTTCATTGCAGACCTAGAAGCCGC
GATGGACGCTGAAAGGCGAGAGGCAGAGATGCGTCTAATAGAGTCTGAAG
AACAGATGATTCAAGACTTCGAACGACTCGGAAAAGAACAAGCGCAACAA
GATTCCGAGCTCTTTGCGTTTCATGAGCACAATGACGACACTGATTCAAC
CAAGGTGCTATGCCCCGTGTGTGAACGTGGAAAGCTTTATGTTAGGGAAG
GAGTAGTGTTTTGTAGATGTGGCGTTCGAATAGATGGTGGAACTTACGAT
AATCTGACTAGCGAAATGGTGAAGCAACGCCTTGAGCACGTGTTCGCGCA
ACATGCACATTGCGGAAGCTCACCAAAGTTTGAGCTTCGCCACATGTTTG
GAACATTTCTATGGGCTACTTGCCGCTGCGGAGAGGATTTCATTGTGTTT
TAA
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