Gchil10690.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10690.t1
Unique Name	Gchil10690.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:116521..118557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	449447.MAE_47970
Preferred name	miaB
PFAMs	Radical_SAM,TRAM,UPF0004
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00003,RC00980,RC03221,RC03222
KEGG ko	ko:K06168
KEGG Reaction	R10645,R10646,R10647
Evalue	1.05e-162
EggNOG OGs	COG0621@1\|root,COG0621@2\|Bacteria,1G0BT@1117\|Cyanobacteria
EC	2.8.4.3
Description	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10690	Gchil10690	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 116521..118557 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10690.t1.stop1	Gchil10690.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 116521..116523 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10690.t1.CDS1	Gchil10690.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 116521..118557 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10690.t1.exon1	Gchil10690.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 116521..118557 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10690.t1.start1	Gchil10690.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 118555..118557 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10690.t1	Gchil10690.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 116521..118557 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:116521..118557-
coding sequence from alignment at tig00000138_pilon:116521..118557-

mRNA sequence

>Gchil10690.t1 ID=Gchil10690.t1|Name=Gchil10690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=679bp
MTRTVAFGPQGPILSFLGALHVSPLLRLKCPLRENQKAHASSATGLNPIV
SVSTHPSPETPPPPPAGKQIRLHRKPIVPLVPPLQRFYDFSNHSVKAIRL
THCRVDSDQMAEFIENSVRTKRTTLAHLATLLSTCEDTRNSAGDTGWIPL
PNATWPVSSTSNSTEAYTAYISDELLQNALASRPCSLQRTKVSYGWEIFE
VTDVRHKVQATVLGATREKGFSVNPNMRRTSKKKPSIIPKSFYIQTLGCQ
MNESDSERMVAELEREGYHQVEDSKKSAIYLINTCALRDHAQQKVYSYLG
PHAQRKWDAPQEVTLIVAGCVAQLEGEALLSRVPEIDIVMGPQYANRLAD
VINLYHTSKTQVVAVNPIHIHEDISKPKRSSKLTAWVNVIYGCIERCTYC
VVPNTRGLEQSRPMSSIRKEMEALAAEGYREVVLLGQNVDAYGRDLSPKR
TFSELLRYVHEVDGIERIRFTTGHPRYISDSLIDTVYELPKVMEHFHIPP
QSGDSKILKAMKRGYTRERYIQIARRIRDKIPDASICADMIVGFPGETEE
AFQNTVSMADEVVFDANMVRAYSARPNTNAASLPSQVNEQIKMERLEIMN
KKMKHQAELRSRRYLGRCVEVLVDSVNPKRFSEVSGRERTNRVVFCAGGP
DLIGKIIEVRVQEAYPFSLRGVITRILK*

spliced messenger RNA

>Gchil10690.t1 ID=Gchil10690.t1|Name=Gchil10690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000138_pilon:116521..118557- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGCACGGTCGCTTTTGGGCCTCAGGGACCCATCCTGTCTTTTCT
CGGTGCTCTTCACGTGTCTCCGCTACTGCGTCTCAAATGTCCTCTTCGCG
AAAACCAAAAAGCGCATGCAAGCTCCGCTACCGGATTGAATCCAATTGTT
TCCGTATCCACACACCCTTCCCCTGAAACACCCCCACCACCCCCGGCTGG
AAAACAAATACGTCTTCATCGAAAACCCATAGTCCCATTAGTTCCCCCAT
TGCAGCGTTTTTACGACTTCTCAAACCATTCTGTGAAAGCTATCCGTCTG
ACTCACTGTCGGGTTGATTCAGACCAAATGGCAGAGTTTATTGAAAACTC
TGTCAGAACAAAACGAACTACCCTTGCTCATTTGGCCACTCTTCTCTCGA
CTTGCGAGGATACTCGAAATTCAGCAGGAGACACTGGCTGGATTCCTCTG
CCGAATGCAACGTGGCCGGTGTCTTCGACATCAAATTCTACAGAGGCATA
CACTGCGTATATTAGCGACGAACTTCTTCAGAACGCTCTCGCATCACGCC
CCTGCAGTCTTCAGAGAACTAAGGTTTCGTACGGCTGGGAGATCTTCGAG
GTGACAGATGTGCGACACAAAGTCCAGGCTACTGTCCTGGGGGCAACTCG
CGAAAAGGGGTTCTCTGTAAATCCTAACATGCGACGGACATCAAAGAAGA
AGCCAAGTATAATCCCCAAATCTTTCTACATTCAAACCTTGGGTTGCCAG
ATGAACGAGAGCGATAGTGAAAGAATGGTTGCAGAGCTGGAAAGGGAAGG
TTATCATCAAGTAGAAGACTCGAAGAAATCTGCAATTTACTTGATTAACA
CATGTGCGCTAAGAGATCACGCACAGCAAAAGGTATATTCCTACCTTGGC
CCGCATGCACAGAGAAAATGGGACGCTCCGCAAGAGGTAACACTCATTGT
CGCGGGATGCGTCGCACAACTCGAAGGAGAAGCCCTCCTCTCTCGAGTTC
CTGAGATAGATATCGTTATGGGGCCCCAATACGCGAATCGCCTTGCAGAT
GTCATCAACCTTTATCATACGAGCAAAACACAGGTTGTCGCCGTAAATCC
TATTCATATTCATGAGGACATATCGAAGCCGAAGCGCTCTTCCAAGCTCA
CAGCTTGGGTGAACGTAATATATGGCTGCATAGAACGATGTACGTACTGT
GTTGTTCCGAACACAAGAGGTCTGGAGCAGTCACGCCCAATGTCAAGCAT
TCGAAAGGAGATGGAAGCCCTGGCAGCGGAAGGATACCGTGAAGTTGTTC
TTCTCGGGCAAAACGTTGATGCCTATGGTCGAGACCTGTCCCCGAAAAGG
ACATTTTCTGAGCTGTTGAGATATGTCCATGAAGTGGATGGCATTGAAAG
AATTCGGTTCACGACGGGTCATCCACGTTATATATCTGACAGTCTAATTG
ATACAGTATATGAGCTTCCAAAGGTGATGGAGCATTTCCATATACCCCCC
CAGTCTGGTGATTCAAAAATTCTAAAGGCAATGAAGAGGGGTTACACTCG
TGAACGGTACATTCAGATCGCTCGAAGGATCAGAGACAAAATACCGGACG
CTTCTATTTGTGCTGATATGATAGTTGGTTTCCCAGGGGAAACCGAGGAG
GCCTTTCAGAACACTGTCAGTATGGCCGATGAAGTGGTTTTCGATGCAAA
CATGGTGAGAGCGTACTCTGCACGACCAAACACAAATGCTGCCTCTTTAC
CTAGTCAAGTCAACGAACAAATTAAGATGGAGCGATTAGAGATTATGAAT
AAGAAAATGAAGCATCAGGCGGAACTACGAAGTCGTAGATATCTAGGTCG
TTGCGTCGAAGTTCTGGTTGATAGTGTAAATCCAAAACGGTTTAGCGAAG
TGAGTGGCAGAGAAAGAACAAACCGGGTTGTTTTCTGCGCGGGTGGTCCT
GACCTCATTGGCAAGATTATTGAAGTTCGAGTGCAAGAAGCGTATCCGTT
CAGTTTACGAGGGGTGATCACGAGAATTCTCAAATGA

protein sequence of Gchil10690.t1

>Gchil10690.t1 ID=Gchil10690.t1|Name=Gchil10690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=679bp
MTRTVAFGPQGPILSFLGALHVSPLLRLKCPLRENQKAHASSATGLNPIV
SVSTHPSPETPPPPPAGKQIRLHRKPIVPLVPPLQRFYDFSNHSVKAIRL
THCRVDSDQMAEFIENSVRTKRTTLAHLATLLSTCEDTRNSAGDTGWIPL
PNATWPVSSTSNSTEAYTAYISDELLQNALASRPCSLQRTKVSYGWEIFE
VTDVRHKVQATVLGATREKGFSVNPNMRRTSKKKPSIIPKSFYIQTLGCQ
MNESDSERMVAELEREGYHQVEDSKKSAIYLINTCALRDHAQQKVYSYLG
PHAQRKWDAPQEVTLIVAGCVAQLEGEALLSRVPEIDIVMGPQYANRLAD
VINLYHTSKTQVVAVNPIHIHEDISKPKRSSKLTAWVNVIYGCIERCTYC
VVPNTRGLEQSRPMSSIRKEMEALAAEGYREVVLLGQNVDAYGRDLSPKR
TFSELLRYVHEVDGIERIRFTTGHPRYISDSLIDTVYELPKVMEHFHIPP
QSGDSKILKAMKRGYTRERYIQIARRIRDKIPDASICADMIVGFPGETEE
AFQNTVSMADEVVFDANMVRAYSARPNTNAASLPSQVNEQIKMERLEIMN
KKMKHQAELRSRRYLGRCVEVLVDSVNPKRFSEVSGRERTNRVVFCAGGP
DLIGKIIEVRVQEAYPFSLRGVITRILK*

mRNA from alignment at tig00000138_pilon:116521..118557-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10690.t1 ID=Gchil10690.t1|Name=Gchil10690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00000138_pilon:116521..118557- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGCACGGTCGCTTTTGGGCCTCAGGGACCCATCCTGTCTTTTCT
CGGTGCTCTTCACGTGTCTCCGCTACTGCGTCTCAAATGTCCTCTTCGCG
AAAACCAAAAAGCGCATGCAAGCTCCGCTACCGGATTGAATCCAATTGTT
TCCGTATCCACACACCCTTCCCCTGAAACACCCCCACCACCCCCGGCTGG
AAAACAAATACGTCTTCATCGAAAACCCATAGTCCCATTAGTTCCCCCAT
TGCAGCGTTTTTACGACTTCTCAAACCATTCTGTGAAAGCTATCCGTCTG
ACTCACTGTCGGGTTGATTCAGACCAAATGGCAGAGTTTATTGAAAACTC
TGTCAGAACAAAACGAACTACCCTTGCTCATTTGGCCACTCTTCTCTCGA
CTTGCGAGGATACTCGAAATTCAGCAGGAGACACTGGCTGGATTCCTCTG
CCGAATGCAACGTGGCCGGTGTCTTCGACATCAAATTCTACAGAGGCATA
CACTGCGTATATTAGCGACGAACTTCTTCAGAACGCTCTCGCATCACGCC
CCTGCAGTCTTCAGAGAACTAAGGTTTCGTACGGCTGGGAGATCTTCGAG
GTGACAGATGTGCGACACAAAGTCCAGGCTACTGTCCTGGGGGCAACTCG
CGAAAAGGGGTTCTCTGTAAATCCTAACATGCGACGGACATCAAAGAAGA
AGCCAAGTATAATCCCCAAATCTTTCTACATTCAAACCTTGGGTTGCCAG
ATGAACGAGAGCGATAGTGAAAGAATGGTTGCAGAGCTGGAAAGGGAAGG
TTATCATCAAGTAGAAGACTCGAAGAAATCTGCAATTTACTTGATTAACA
CATGTGCGCTAAGAGATCACGCACAGCAAAAGGTATATTCCTACCTTGGC
CCGCATGCACAGAGAAAATGGGACGCTCCGCAAGAGGTAACACTCATTGT
CGCGGGATGCGTCGCACAACTCGAAGGAGAAGCCCTCCTCTCTCGAGTTC
CTGAGATAGATATCGTTATGGGGCCCCAATACGCGAATCGCCTTGCAGAT
GTCATCAACCTTTATCATACGAGCAAAACACAGGTTGTCGCCGTAAATCC
TATTCATATTCATGAGGACATATCGAAGCCGAAGCGCTCTTCCAAGCTCA
CAGCTTGGGTGAACGTAATATATGGCTGCATAGAACGATGTACGTACTGT
GTTGTTCCGAACACAAGAGGTCTGGAGCAGTCACGCCCAATGTCAAGCAT
TCGAAAGGAGATGGAAGCCCTGGCAGCGGAAGGATACCGTGAAGTTGTTC
TTCTCGGGCAAAACGTTGATGCCTATGGTCGAGACCTGTCCCCGAAAAGG
ACATTTTCTGAGCTGTTGAGATATGTCCATGAAGTGGATGGCATTGAAAG
AATTCGGTTCACGACGGGTCATCCACGTTATATATCTGACAGTCTAATTG
ATACAGTATATGAGCTTCCAAAGGTGATGGAGCATTTCCATATACCCCCC
CAGTCTGGTGATTCAAAAATTCTAAAGGCAATGAAGAGGGGTTACACTCG
TGAACGGTACATTCAGATCGCTCGAAGGATCAGAGACAAAATACCGGACG
CTTCTATTTGTGCTGATATGATAGTTGGTTTCCCAGGGGAAACCGAGGAG
GCCTTTCAGAACACTGTCAGTATGGCCGATGAAGTGGTTTTCGATGCAAA
CATGGTGAGAGCGTACTCTGCACGACCAAACACAAATGCTGCCTCTTTAC
CTAGTCAAGTCAACGAACAAATTAAGATGGAGCGATTAGAGATTATGAAT
AAGAAAATGAAGCATCAGGCGGAACTACGAAGTCGTAGATATCTAGGTCG
TTGCGTCGAAGTTCTGGTTGATAGTGTAAATCCAAAACGGTTTAGCGAAG
TGAGTGGCAGAGAAAGAACAAACCGGGTTGTTTTCTGCGCGGGTGGTCCT
GACCTCATTGGCAAGATTATTGAAGTTCGAGTGCAAGAAGCGTATCCGTT
CAGTTTACGAGGGGTGATCACGAGAATTCTCAAATGA

Coding sequence (CDS) from alignment at tig00000138_pilon:116521..118557-

>Gchil10690.t1 ID=Gchil10690.t1|Name=Gchil10690.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2037bp|location=Sequence derived from alignment at tig00000138_pilon:116521..118557- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGCACGGTCGCTTTTGGGCCTCAGGGACCCATCCTGTCTTTTCT
CGGTGCTCTTCACGTGTCTCCGCTACTGCGTCTCAAATGTCCTCTTCGCG
AAAACCAAAAAGCGCATGCAAGCTCCGCTACCGGATTGAATCCAATTGTT
TCCGTATCCACACACCCTTCCCCTGAAACACCCCCACCACCCCCGGCTGG
AAAACAAATACGTCTTCATCGAAAACCCATAGTCCCATTAGTTCCCCCAT
TGCAGCGTTTTTACGACTTCTCAAACCATTCTGTGAAAGCTATCCGTCTG
ACTCACTGTCGGGTTGATTCAGACCAAATGGCAGAGTTTATTGAAAACTC
TGTCAGAACAAAACGAACTACCCTTGCTCATTTGGCCACTCTTCTCTCGA
CTTGCGAGGATACTCGAAATTCAGCAGGAGACACTGGCTGGATTCCTCTG
CCGAATGCAACGTGGCCGGTGTCTTCGACATCAAATTCTACAGAGGCATA
CACTGCGTATATTAGCGACGAACTTCTTCAGAACGCTCTCGCATCACGCC
CCTGCAGTCTTCAGAGAACTAAGGTTTCGTACGGCTGGGAGATCTTCGAG
GTGACAGATGTGCGACACAAAGTCCAGGCTACTGTCCTGGGGGCAACTCG
CGAAAAGGGGTTCTCTGTAAATCCTAACATGCGACGGACATCAAAGAAGA
AGCCAAGTATAATCCCCAAATCTTTCTACATTCAAACCTTGGGTTGCCAG
ATGAACGAGAGCGATAGTGAAAGAATGGTTGCAGAGCTGGAAAGGGAAGG
TTATCATCAAGTAGAAGACTCGAAGAAATCTGCAATTTACTTGATTAACA
CATGTGCGCTAAGAGATCACGCACAGCAAAAGGTATATTCCTACCTTGGC
CCGCATGCACAGAGAAAATGGGACGCTCCGCAAGAGGTAACACTCATTGT
CGCGGGATGCGTCGCACAACTCGAAGGAGAAGCCCTCCTCTCTCGAGTTC
CTGAGATAGATATCGTTATGGGGCCCCAATACGCGAATCGCCTTGCAGAT
GTCATCAACCTTTATCATACGAGCAAAACACAGGTTGTCGCCGTAAATCC
TATTCATATTCATGAGGACATATCGAAGCCGAAGCGCTCTTCCAAGCTCA
CAGCTTGGGTGAACGTAATATATGGCTGCATAGAACGATGTACGTACTGT
GTTGTTCCGAACACAAGAGGTCTGGAGCAGTCACGCCCAATGTCAAGCAT
TCGAAAGGAGATGGAAGCCCTGGCAGCGGAAGGATACCGTGAAGTTGTTC
TTCTCGGGCAAAACGTTGATGCCTATGGTCGAGACCTGTCCCCGAAAAGG
ACATTTTCTGAGCTGTTGAGATATGTCCATGAAGTGGATGGCATTGAAAG
AATTCGGTTCACGACGGGTCATCCACGTTATATATCTGACAGTCTAATTG
ATACAGTATATGAGCTTCCAAAGGTGATGGAGCATTTCCATATACCCCCC
CAGTCTGGTGATTCAAAAATTCTAAAGGCAATGAAGAGGGGTTACACTCG
TGAACGGTACATTCAGATCGCTCGAAGGATCAGAGACAAAATACCGGACG
CTTCTATTTGTGCTGATATGATAGTTGGTTTCCCAGGGGAAACCGAGGAG
GCCTTTCAGAACACTGTCAGTATGGCCGATGAAGTGGTTTTCGATGCAAA
CATGGTGAGAGCGTACTCTGCACGACCAAACACAAATGCTGCCTCTTTAC
CTAGTCAAGTCAACGAACAAATTAAGATGGAGCGATTAGAGATTATGAAT
AAGAAAATGAAGCATCAGGCGGAACTACGAAGTCGTAGATATCTAGGTCG
TTGCGTCGAAGTTCTGGTTGATAGTGTAAATCCAAAACGGTTTAGCGAAG
TGAGTGGCAGAGAAAGAACAAACCGGGTTGTTTTCTGCGCGGGTGGTCCT
GACCTCATTGGCAAGATTATTGAAGTTCGAGTGCAAGAAGCGTATCCGTT
CAGTTTACGAGGGGTGATCACGAGAATTCTCAAATGA