Gchil10686.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10686.t1
Unique NameGchil10686.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:108157..108846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123020.AUIE01000006_gene4026
Preferred namefrr
PFAMsRRF
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02838
GOsGO:0002181,GO:0002184,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032984,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
Evalue4.04e-35
EggNOG OGsCOG0233@1|root,COG0233@2|Bacteria,1N66T@1224|Proteobacteria,1RN75@1236|Gammaproteobacteria,1YEGZ@136841|Pseudomonas aeruginosa group
DescriptionResponsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10686Gchil10686Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 108157..108846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1Gchil10686.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 108157..108846 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1.start1Gchil10686.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 108157..108159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1.CDS1Gchil10686.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 108157..108235 +
Gchil10686.t1.CDS2Gchil10686.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 108309..108541 +
Gchil10686.t1.CDS3Gchil10686.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 108622..108846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1.exon1Gchil10686.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 108157..108235 +
Gchil10686.t1.exon2Gchil10686.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 108309..108541 +
Gchil10686.t1.exon3Gchil10686.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 108622..108846 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1.intron1Gchil10686.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 108236..108308 +
Gchil10686.t1.intron2Gchil10686.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000138_pilon 108542..108621 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10686.t1.stop1Gchil10686.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 108844..108846 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10686.t1 ID=Gchil10686.t1|Name=Gchil10686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=179bp
MKKTLDTLQTSYSRLRVDGATPAILDDVTVNAYGTETQLKSIAQVGVRDG
RTLVVQVFDESTMCAVEKAIKAAGLNLNPIREAGGKLKVPIPRSSKHTRD
SLKDNALKEAEAAKIATRMIRRKAMEEVKNLKSEVSKDDIKKIEKGVQVL
TDRFIGDITEVQRNKVRTIEALKVSQSQ*
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spliced messenger RNA

>Gchil10686.t1 ID=Gchil10686.t1|Name=Gchil10686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000138_pilon:108157..108846+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAAACTCTCGATACTCTCCAAACCAGTTACTCCCGGCTTCGCGT
TGATGGAGCTACCCCAGCAATTTTAGACGATGTTACTGTGAACGCATACG
GAACTGAAACGCAATTGAAAAGCATTGCGCAAGTCGGTGTTCGCGATGGC
CGAACATTAGTTGTTCAAGTATTCGATGAAAGCACGATGTGTGCAGTGGA
AAAAGCTATCAAGGCTGCCGGTTTAAACCTAAACCCAATAAGGGAAGCGG
GCGGAAAACTCAAAGTTCCAATACCAAGATCTTCCAAGCACACACGAGAC
TCTCTGAAAGATAACGCGCTGAAGGAAGCAGAAGCTGCAAAAATCGCGAC
ACGCATGATTCGAAGGAAGGCAATGGAAGAGGTGAAGAATCTGAAGAGCG
AAGTTTCCAAAGATGATATCAAAAAGATAGAAAAGGGAGTACAAGTATTG
ACAGATCGATTCATCGGCGACATAACCGAAGTGCAAAGGAACAAGGTGCG
TACCATTGAGGCGCTCAAAGTGTCACAGTCACAATAA
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protein sequence of Gchil10686.t1

>Gchil10686.t1 ID=Gchil10686.t1|Name=Gchil10686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MKKTLDTLQTSYSRLRVDGATPAILDDVTVNAYGTETQLKSIAQVGVRDG
RTLVVQVFDESTMCAVEKAIKAAGLNLNPIREAGGKLKVPIPRSSKHTRD
SLKDNALKEAEAAKIATRMIRRKAMEEVKNLKSEVSKDDIKKIEKGVQVL
TDRFIGDITEVQRNKVRTIEALKVSQSQ*
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mRNA from alignment at tig00000138_pilon:108157..108846+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10686.t1 ID=Gchil10686.t1|Name=Gchil10686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000138_pilon:108157..108846+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAAAACTCTCGATACTCTCCAAACCAGTTACTCCCGGCTTCGCGT
TGATGGAGCTACCCCAGCAATTTTAGACGGTATGTACGCCTCCACCTCAT
CAAATGGTGAAGTTCCTGACTGAAGATACTAAGCGTTCAAGTCTTTTAAA
AGATGTTACTGTGAACGCATACGGAACTGAAACGCAATTGAAAAGCATTG
CGCAAGTCGGTGTTCGCGATGGCCGAACATTAGTTGTTCAAGTATTCGAT
GAAAGCACGATGTGTGCAGTGGAAAAAGCTATCAAGGCTGCCGGTTTAAA
CCTAAACCCAATAAGGGAAGCGGGCGGAAAACTCAAAGTTCCAATACCAA
GATCTTCCAAGCACACACGAGACTCTCTGAAAGATGTGAGTATTTTCCTT
GGTACTATTTTCTTGTACTCATCATTCCATACACACCGTACTAATGTTTT
CTGTTTCATGTTTAGAACGCGCTGAAGGAAGCAGAAGCTGCAAAAATCGC
GACACGCATGATTCGAAGGAAGGCAATGGAAGAGGTGAAGAATCTGAAGA
GCGAAGTTTCCAAAGATGATATCAAAAAGATAGAAAAGGGAGTACAAGTA
TTGACAGATCGATTCATCGGCGACATAACCGAAGTGCAAAGGAACAAGGT
GCGTACCATTGAGGCGCTCAAAGTGTCACAGTCACAATAA
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Coding sequence (CDS) from alignment at tig00000138_pilon:108157..108846+

>Gchil10686.t1 ID=Gchil10686.t1|Name=Gchil10686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000138_pilon:108157..108846+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAAAACTCTCGATACTCTCCAAACCAGTTACTCCCGGCTTCGCGT
TGATGGAGCTACCCCAGCAATTTTAGACGATGTTACTGTGAACGCATACG
GAACTGAAACGCAATTGAAAAGCATTGCGCAAGTCGGTGTTCGCGATGGC
CGAACATTAGTTGTTCAAGTATTCGATGAAAGCACGATGTGTGCAGTGGA
AAAAGCTATCAAGGCTGCCGGTTTAAACCTAAACCCAATAAGGGAAGCGG
GCGGAAAACTCAAAGTTCCAATACCAAGATCTTCCAAGCACACACGAGAC
TCTCTGAAAGATAACGCGCTGAAGGAAGCAGAAGCTGCAAAAATCGCGAC
ACGCATGATTCGAAGGAAGGCAATGGAAGAGGTGAAGAATCTGAAGAGCG
AAGTTTCCAAAGATGATATCAAAAAGATAGAAAAGGGAGTACAAGTATTG
ACAGATCGATTCATCGGCGACATAACCGAAGTGCAAAGGAACAAGGTGCG
TACCATTGAGGCGCTCAAAGTGTCACAGTCACAATAA
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