Gchil10684.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10684.t1
Unique Name	Gchil10684.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	273

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:102933..103751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707068.1
PFAMs	DUF2407,DUF2407_C,ubiquitin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K22063
Evalue	1.29e-22
EggNOG OGs	2CYZ9@1\|root,2S7DP@2759\|Eukaryota
Description	DUF2407 C-terminal domain
COG category	S
BRITE	ko00000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10684	Gchil10684	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 102933..103751 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10684.t1.start1	Gchil10684.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 102933..102935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10684.t1.CDS1	Gchil10684.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 102933..103751 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10684.t1.exon1	Gchil10684.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 102933..103751 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10684.t1.stop1	Gchil10684.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 103749..103751 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10684.t1	Gchil10684.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 102933..103751 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:102933..103751+
coding sequence from alignment at tig00000138_pilon:102933..103751+

mRNA sequence

>Gchil10684.t1 ID=Gchil10684.t1|Name=Gchil10684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=273bp
MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVADRIVEAENLDG
DAFRIRLISGGKLFTDFSLPVREIVGDGDFLHCAVSQRHNEVDESQQRSE
NQSDVAPSDGNLVFEAIDTYRGVSVIIPEQSALASDRLMEAGFSAEETRL
ILQHFQVLQSHARRGRHPTGDIEEGGQRAEVGIDENGDLITRVRRPRAEP
RSMLTSGVEGSNADFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGV
ATNCAFGILRTSLRLNNSFSAT*

spliced messenger RNA

>Gchil10684.t1 ID=Gchil10684.t1|Name=Gchil10684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000138_pilon:102933..103751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACAATGAAGAAGCCGAAAAGCCTGCGGTCCAACATGTGCGCGT
TGGTCTCCCAGGTGGCACTGTCCACGACTTCGAGCTACCCTTGGATGCAA
CATTGTCCGACGTAGCGGACCGTATCGTTGAAGCCGAAAACCTAGACGGG
GATGCGTTCAGGATAAGACTAATAAGCGGAGGCAAGCTCTTCACGGACTT
CTCGTTGCCGGTGCGCGAAATCGTTGGCGATGGAGATTTCCTTCACTGTG
CAGTATCGCAGAGACACAATGAAGTAGATGAGTCGCAACAGCGGAGCGAA
AATCAAAGTGACGTAGCGCCCTCAGACGGAAACTTGGTGTTCGAAGCAAT
TGACACATATCGCGGTGTGAGTGTCATAATTCCAGAGCAGTCGGCTCTTG
CTTCAGACAGACTCATGGAAGCGGGATTCTCCGCAGAAGAAACTCGCCTG
ATACTTCAACACTTTCAGGTATTACAAAGTCATGCGCGACGTGGTCGGCA
TCCCACCGGAGATATTGAGGAAGGAGGTCAACGAGCTGAAGTTGGCATCG
ACGAAAATGGTGATTTAATTACAAGAGTACGACGTCCTCGAGCCGAACCT
AGGTCGATGCTAACTTCAGGGGTGGAAGGTTCAAATGCAGACTTTCTAAT
GGGGTGTATTTTTGGATACCTGCTCGGTATTATTGTCCTCGTGCTACTGC
TAGATAACAGCGCAACACGCCGCTGGCGTGTCGGGCTGATTGCAGGCGTG
GCAACCAATTGTGCTTTTGGTATTCTGCGAACCAGTTTGCGCTTGAACAA
TTCCTTCTCAGCAACTTAA

protein sequence of Gchil10684.t1

>Gchil10684.t1 ID=Gchil10684.t1|Name=Gchil10684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=273bp
MPDNEEAEKPAVQHVRVGLPGGTVHDFELPLDATLSDVADRIVEAENLDG
DAFRIRLISGGKLFTDFSLPVREIVGDGDFLHCAVSQRHNEVDESQQRSE
NQSDVAPSDGNLVFEAIDTYRGVSVIIPEQSALASDRLMEAGFSAEETRL
ILQHFQVLQSHARRGRHPTGDIEEGGQRAEVGIDENGDLITRVRRPRAEP
RSMLTSGVEGSNADFLMGCIFGYLLGIIVLVLLLDNSATRRWRVGLIAGV
ATNCAFGILRTSLRLNNSFSAT*

mRNA from alignment at tig00000138_pilon:102933..103751+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10684.t1 ID=Gchil10684.t1|Name=Gchil10684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000138_pilon:102933..103751+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGACAATGAAGAAGCCGAAAAGCCTGCGGTCCAACATGTGCGCGT
TGGTCTCCCAGGTGGCACTGTCCACGACTTCGAGCTACCCTTGGATGCAA
CATTGTCCGACGTAGCGGACCGTATCGTTGAAGCCGAAAACCTAGACGGG
GATGCGTTCAGGATAAGACTAATAAGCGGAGGCAAGCTCTTCACGGACTT
CTCGTTGCCGGTGCGCGAAATCGTTGGCGATGGAGATTTCCTTCACTGTG
CAGTATCGCAGAGACACAATGAAGTAGATGAGTCGCAACAGCGGAGCGAA
AATCAAAGTGACGTAGCGCCCTCAGACGGAAACTTGGTGTTCGAAGCAAT
TGACACATATCGCGGTGTGAGTGTCATAATTCCAGAGCAGTCGGCTCTTG
CTTCAGACAGACTCATGGAAGCGGGATTCTCCGCAGAAGAAACTCGCCTG
ATACTTCAACACTTTCAGGTATTACAAAGTCATGCGCGACGTGGTCGGCA
TCCCACCGGAGATATTGAGGAAGGAGGTCAACGAGCTGAAGTTGGCATCG
ACGAAAATGGTGATTTAATTACAAGAGTACGACGTCCTCGAGCCGAACCT
AGGTCGATGCTAACTTCAGGGGTGGAAGGTTCAAATGCAGACTTTCTAAT
GGGGTGTATTTTTGGATACCTGCTCGGTATTATTGTCCTCGTGCTACTGC
TAGATAACAGCGCAACACGCCGCTGGCGTGTCGGGCTGATTGCAGGCGTG
GCAACCAATTGTGCTTTTGGTATTCTGCGAACCAGTTTGCGCTTGAACAA
TTCCTTCTCAGCAACTTAA

Coding sequence (CDS) from alignment at tig00000138_pilon:102933..103751+

>Gchil10684.t1 ID=Gchil10684.t1|Name=Gchil10684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000138_pilon:102933..103751+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGACAATGAAGAAGCCGAAAAGCCTGCGGTCCAACATGTGCGCGT
TGGTCTCCCAGGTGGCACTGTCCACGACTTCGAGCTACCCTTGGATGCAA
CATTGTCCGACGTAGCGGACCGTATCGTTGAAGCCGAAAACCTAGACGGG
GATGCGTTCAGGATAAGACTAATAAGCGGAGGCAAGCTCTTCACGGACTT
CTCGTTGCCGGTGCGCGAAATCGTTGGCGATGGAGATTTCCTTCACTGTG
CAGTATCGCAGAGACACAATGAAGTAGATGAGTCGCAACAGCGGAGCGAA
AATCAAAGTGACGTAGCGCCCTCAGACGGAAACTTGGTGTTCGAAGCAAT
TGACACATATCGCGGTGTGAGTGTCATAATTCCAGAGCAGTCGGCTCTTG
CTTCAGACAGACTCATGGAAGCGGGATTCTCCGCAGAAGAAACTCGCCTG
ATACTTCAACACTTTCAGGTATTACAAAGTCATGCGCGACGTGGTCGGCA
TCCCACCGGAGATATTGAGGAAGGAGGTCAACGAGCTGAAGTTGGCATCG
ACGAAAATGGTGATTTAATTACAAGAGTACGACGTCCTCGAGCCGAACCT
AGGTCGATGCTAACTTCAGGGGTGGAAGGTTCAAATGCAGACTTTCTAAT
GGGGTGTATTTTTGGATACCTGCTCGGTATTATTGTCCTCGTGCTACTGC
TAGATAACAGCGCAACACGCCGCTGGCGTGTCGGGCTGATTGCAGGCGTG
GCAACCAATTGTGCTTTTGGTATTCTGCGAACCAGTTTGCGCTTGAACAA
TTCCTTCTCAGCAACTTAA