Gchil10678.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10678.t1
Unique Name	Gchil10678.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000138_pilon	contig	tig00000138_pilon:90624..92789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707783.1
Preferred name	ABCF3
PFAMs	ABC_tran,ABC_tran_Xtn
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06158
GOs	GO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008144,GO:0008150,GO:0009889,GO:0009893,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022626,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033135,GO:0033138,GO:0034248,GO:0035639,GO:0036094,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1900247,GO:1901265,GO:1901363,GO:1990904,GO:2000112,GO:2000765
Evalue	4.86e-224
EggNOG OGs	COG0488@1\|root,KOG0062@2759\|Eukaryota
Description	ATPase activity
COG category	J
BRITE	ko00000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10678	Gchil10678	Gracilaria chilensis NLEC103_M9 male	gene	tig00000138_pilon 90624..92789 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10678.t1.start1	Gchil10678.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000138_pilon 90624..90626 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10678.t1.CDS1	Gchil10678.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000138_pilon 90624..92789 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10678.t1.exon1	Gchil10678.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000138_pilon 90624..92789 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10678.t1.stop1	Gchil10678.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000138_pilon 92787..92789 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10678.t1	Gchil10678.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000138_pilon 90624..92789 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000138_pilon:90624..92789+
coding sequence from alignment at tig00000138_pilon:90624..92789+

mRNA sequence

>Gchil10678.t1 ID=Gchil10678.t1|Name=Gchil10678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=722bp
MTGAAVTVEIARDALANAVGVKNPLADLDPAVIQYLTSALADSAAAEEEV
VEVVSIFLPHLSPEIHLSESEQIARDIRRQLHGAPTEDHSREKLVRLSKA
TRLGASVGIDVGRRKHTRARQSGGNSNQTLDRSAEAERAKEVSAARRARR
VGAQVKTYQSQATVSSVKAKYTPGSSDVHIEGLDLAFGGMTLLEAAELHI
PYGRRVGIIGRNGCGKTTLMRAIARRELPIPEDMDIVYVEQEIAGSEKTP
LEIVLESDLERQELLNEEEELNEKLAEAEDSGVESDPSVVARLAEVYEKL
GQMDADKAKARAAAILDGLGFSDHAMTKQTVNEFSGGWRMRISLASALFL
EPRLLLLDEPSNHLDAMTVIWLGDYLSRWPHTIACVSHDRAFLNEICTDI
IHVKDHRLHPYSGNYDDFEKARRERLKELERAAESQEMKRAHIQKFVDKF
RYNAKRASMAQSRLKMLQRMDEDRVVLPSEEDEFSFTFPDPGALTGSHAS
VQICDVTFGYPGREVLFRSLDFSINMDSRTVLLGPNGAGKSTILKLLLGE
NVPIEGEVKKSPKLRLGYFSQHHMDTLVLWRTPLEHMKVTFPDAIMPELR
SHLAKLGVRNDQALRPINTLSGGQKSRVALAVITFQKPHILILDEPTNHL
DIETLDSLILALNSFNGGLLVVTHDARLVASVCETICVCEDGKVSEFRGE
YDEYRKQMVQRLRARSKLFSM*

spliced messenger RNA

>Gchil10678.t1 ID=Gchil10678.t1|Name=Gchil10678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000138_pilon:90624..92789+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGCGCCGCTGTGACGGTCGAAATTGCACGCGACGCTCTCGCTAA
TGCTGTAGGCGTAAAGAACCCACTTGCTGATCTCGACCCAGCTGTAATTC
AGTATCTAACATCCGCTCTTGCCGATTCTGCTGCCGCGGAAGAAGAAGTT
GTCGAAGTTGTCTCAATATTTCTTCCACATCTCAGTCCTGAGATTCATCT
ATCCGAGAGCGAACAAATTGCTCGCGATATTCGCCGACAGCTTCATGGCG
CTCCTACCGAGGATCATTCACGAGAAAAACTCGTCCGTCTCTCGAAGGCC
ACCCGCCTTGGAGCAAGTGTGGGCATAGATGTAGGCAGACGGAAACACAC
TCGAGCCAGGCAAAGCGGCGGAAACTCGAATCAGACATTAGACCGCTCTG
CAGAAGCGGAAAGAGCAAAGGAAGTTTCCGCAGCCCGTCGGGCAAGACGT
GTAGGGGCACAGGTCAAGACTTATCAGTCTCAAGCAACAGTTAGTAGTGT
CAAAGCAAAATATACGCCTGGTTCATCTGATGTTCACATTGAAGGATTGG
ACCTCGCGTTTGGAGGAATGACTTTATTGGAAGCCGCTGAGCTCCACATA
CCATACGGAAGAAGAGTTGGAATCATTGGAAGAAACGGATGTGGCAAGAC
AACATTGATGCGCGCGATTGCTCGTCGAGAGCTACCAATTCCGGAGGATA
TGGATATTGTATACGTCGAGCAAGAAATTGCTGGAAGTGAGAAGACCCCT
CTAGAGATAGTTTTAGAAAGTGATCTAGAGCGGCAAGAGCTTTTGAATGA
AGAGGAAGAGTTGAACGAGAAATTGGCTGAAGCAGAGGATAGCGGCGTAG
AGTCTGATCCTTCAGTGGTTGCGAGACTCGCCGAAGTTTATGAAAAATTG
GGACAGATGGACGCCGACAAGGCCAAGGCGCGTGCCGCAGCAATCCTAGA
TGGACTAGGTTTTAGTGATCATGCCATGACAAAACAAACGGTGAACGAGT
TTTCTGGTGGTTGGCGTATGCGCATTTCACTCGCTTCTGCTCTGTTTTTG
GAACCTAGGCTCTTGTTGTTGGATGAACCGTCAAACCATCTCGATGCAAT
GACTGTCATCTGGCTCGGAGATTATCTTTCTCGGTGGCCGCACACAATAG
CATGTGTTTCTCATGATCGAGCATTTCTGAACGAGATATGTACAGATATA
ATTCACGTTAAAGACCACAGGTTACATCCATATAGTGGTAACTACGATGA
TTTCGAGAAGGCAAGAAGAGAAAGACTCAAGGAGCTGGAACGCGCTGCTG
AAAGTCAAGAAATGAAGCGCGCACACATTCAGAAGTTCGTAGACAAATTC
CGTTACAACGCAAAGCGTGCTAGCATGGCTCAAAGTCGATTGAAGATGCT
CCAACGCATGGATGAAGATCGAGTGGTGCTTCCCAGCGAAGAGGACGAAT
TCTCATTCACCTTTCCGGACCCTGGAGCACTGACTGGCTCCCATGCATCC
GTTCAGATATGCGATGTGACGTTTGGCTATCCGGGAAGAGAAGTTCTATT
TCGGAGTTTAGATTTCAGTATAAATATGGATTCGAGAACAGTTCTTCTTG
GTCCGAATGGGGCGGGTAAGTCGACAATACTGAAGCTTCTTCTCGGGGAA
AATGTCCCAATCGAAGGTGAAGTGAAGAAGTCCCCGAAGCTGCGATTGGG
ATACTTCTCACAGCATCATATGGACACCCTTGTCTTGTGGCGAACACCCC
TGGAGCACATGAAAGTTACCTTCCCAGATGCAATAATGCCCGAGCTACGA
AGTCATTTGGCCAAATTGGGTGTACGGAATGATCAGGCGCTTCGACCAAT
CAATACGTTATCTGGGGGCCAAAAGAGTCGGGTGGCTCTCGCGGTCATCA
CTTTTCAGAAGCCTCATATTTTGATCCTTGATGAGCCCACCAATCATCTC
GATATTGAGACTCTGGATTCGCTGATATTGGCGTTGAATTCTTTCAACGG
AGGGTTGTTGGTAGTTACTCATGATGCGAGACTGGTTGCTAGCGTATGCG
AGACGATCTGTGTATGTGAGGATGGAAAGGTATCGGAGTTCAGGGGAGAG
TATGACGAATACCGAAAGCAAATGGTTCAAAGATTACGTGCGAGATCGAA
ACTTTTCTCTATGTAG

protein sequence of Gchil10678.t1

>Gchil10678.t1 ID=Gchil10678.t1|Name=Gchil10678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=722bp
MTGAAVTVEIARDALANAVGVKNPLADLDPAVIQYLTSALADSAAAEEEV
VEVVSIFLPHLSPEIHLSESEQIARDIRRQLHGAPTEDHSREKLVRLSKA
TRLGASVGIDVGRRKHTRARQSGGNSNQTLDRSAEAERAKEVSAARRARR
VGAQVKTYQSQATVSSVKAKYTPGSSDVHIEGLDLAFGGMTLLEAAELHI
PYGRRVGIIGRNGCGKTTLMRAIARRELPIPEDMDIVYVEQEIAGSEKTP
LEIVLESDLERQELLNEEEELNEKLAEAEDSGVESDPSVVARLAEVYEKL
GQMDADKAKARAAAILDGLGFSDHAMTKQTVNEFSGGWRMRISLASALFL
EPRLLLLDEPSNHLDAMTVIWLGDYLSRWPHTIACVSHDRAFLNEICTDI
IHVKDHRLHPYSGNYDDFEKARRERLKELERAAESQEMKRAHIQKFVDKF
RYNAKRASMAQSRLKMLQRMDEDRVVLPSEEDEFSFTFPDPGALTGSHAS
VQICDVTFGYPGREVLFRSLDFSINMDSRTVLLGPNGAGKSTILKLLLGE
NVPIEGEVKKSPKLRLGYFSQHHMDTLVLWRTPLEHMKVTFPDAIMPELR
SHLAKLGVRNDQALRPINTLSGGQKSRVALAVITFQKPHILILDEPTNHL
DIETLDSLILALNSFNGGLLVVTHDARLVASVCETICVCEDGKVSEFRGE
YDEYRKQMVQRLRARSKLFSM*

mRNA from alignment at tig00000138_pilon:90624..92789+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10678.t1 ID=Gchil10678.t1|Name=Gchil10678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00000138_pilon:90624..92789+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGCGCCGCTGTGACGGTCGAAATTGCACGCGACGCTCTCGCTAA
TGCTGTAGGCGTAAAGAACCCACTTGCTGATCTCGACCCAGCTGTAATTC
AGTATCTAACATCCGCTCTTGCCGATTCTGCTGCCGCGGAAGAAGAAGTT
GTCGAAGTTGTCTCAATATTTCTTCCACATCTCAGTCCTGAGATTCATCT
ATCCGAGAGCGAACAAATTGCTCGCGATATTCGCCGACAGCTTCATGGCG
CTCCTACCGAGGATCATTCACGAGAAAAACTCGTCCGTCTCTCGAAGGCC
ACCCGCCTTGGAGCAAGTGTGGGCATAGATGTAGGCAGACGGAAACACAC
TCGAGCCAGGCAAAGCGGCGGAAACTCGAATCAGACATTAGACCGCTCTG
CAGAAGCGGAAAGAGCAAAGGAAGTTTCCGCAGCCCGTCGGGCAAGACGT
GTAGGGGCACAGGTCAAGACTTATCAGTCTCAAGCAACAGTTAGTAGTGT
CAAAGCAAAATATACGCCTGGTTCATCTGATGTTCACATTGAAGGATTGG
ACCTCGCGTTTGGAGGAATGACTTTATTGGAAGCCGCTGAGCTCCACATA
CCATACGGAAGAAGAGTTGGAATCATTGGAAGAAACGGATGTGGCAAGAC
AACATTGATGCGCGCGATTGCTCGTCGAGAGCTACCAATTCCGGAGGATA
TGGATATTGTATACGTCGAGCAAGAAATTGCTGGAAGTGAGAAGACCCCT
CTAGAGATAGTTTTAGAAAGTGATCTAGAGCGGCAAGAGCTTTTGAATGA
AGAGGAAGAGTTGAACGAGAAATTGGCTGAAGCAGAGGATAGCGGCGTAG
AGTCTGATCCTTCAGTGGTTGCGAGACTCGCCGAAGTTTATGAAAAATTG
GGACAGATGGACGCCGACAAGGCCAAGGCGCGTGCCGCAGCAATCCTAGA
TGGACTAGGTTTTAGTGATCATGCCATGACAAAACAAACGGTGAACGAGT
TTTCTGGTGGTTGGCGTATGCGCATTTCACTCGCTTCTGCTCTGTTTTTG
GAACCTAGGCTCTTGTTGTTGGATGAACCGTCAAACCATCTCGATGCAAT
GACTGTCATCTGGCTCGGAGATTATCTTTCTCGGTGGCCGCACACAATAG
CATGTGTTTCTCATGATCGAGCATTTCTGAACGAGATATGTACAGATATA
ATTCACGTTAAAGACCACAGGTTACATCCATATAGTGGTAACTACGATGA
TTTCGAGAAGGCAAGAAGAGAAAGACTCAAGGAGCTGGAACGCGCTGCTG
AAAGTCAAGAAATGAAGCGCGCACACATTCAGAAGTTCGTAGACAAATTC
CGTTACAACGCAAAGCGTGCTAGCATGGCTCAAAGTCGATTGAAGATGCT
CCAACGCATGGATGAAGATCGAGTGGTGCTTCCCAGCGAAGAGGACGAAT
TCTCATTCACCTTTCCGGACCCTGGAGCACTGACTGGCTCCCATGCATCC
GTTCAGATATGCGATGTGACGTTTGGCTATCCGGGAAGAGAAGTTCTATT
TCGGAGTTTAGATTTCAGTATAAATATGGATTCGAGAACAGTTCTTCTTG
GTCCGAATGGGGCGGGTAAGTCGACAATACTGAAGCTTCTTCTCGGGGAA
AATGTCCCAATCGAAGGTGAAGTGAAGAAGTCCCCGAAGCTGCGATTGGG
ATACTTCTCACAGCATCATATGGACACCCTTGTCTTGTGGCGAACACCCC
TGGAGCACATGAAAGTTACCTTCCCAGATGCAATAATGCCCGAGCTACGA
AGTCATTTGGCCAAATTGGGTGTACGGAATGATCAGGCGCTTCGACCAAT
CAATACGTTATCTGGGGGCCAAAAGAGTCGGGTGGCTCTCGCGGTCATCA
CTTTTCAGAAGCCTCATATTTTGATCCTTGATGAGCCCACCAATCATCTC
GATATTGAGACTCTGGATTCGCTGATATTGGCGTTGAATTCTTTCAACGG
AGGGTTGTTGGTAGTTACTCATGATGCGAGACTGGTTGCTAGCGTATGCG
AGACGATCTGTGTATGTGAGGATGGAAAGGTATCGGAGTTCAGGGGAGAG
TATGACGAATACCGAAAGCAAATGGTTCAAAGATTACGTGCGAGATCGAA
ACTTTTCTCTATGTAG

Coding sequence (CDS) from alignment at tig00000138_pilon:90624..92789+

>Gchil10678.t1 ID=Gchil10678.t1|Name=Gchil10678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00000138_pilon:90624..92789+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGCGCCGCTGTGACGGTCGAAATTGCACGCGACGCTCTCGCTAA
TGCTGTAGGCGTAAAGAACCCACTTGCTGATCTCGACCCAGCTGTAATTC
AGTATCTAACATCCGCTCTTGCCGATTCTGCTGCCGCGGAAGAAGAAGTT
GTCGAAGTTGTCTCAATATTTCTTCCACATCTCAGTCCTGAGATTCATCT
ATCCGAGAGCGAACAAATTGCTCGCGATATTCGCCGACAGCTTCATGGCG
CTCCTACCGAGGATCATTCACGAGAAAAACTCGTCCGTCTCTCGAAGGCC
ACCCGCCTTGGAGCAAGTGTGGGCATAGATGTAGGCAGACGGAAACACAC
TCGAGCCAGGCAAAGCGGCGGAAACTCGAATCAGACATTAGACCGCTCTG
CAGAAGCGGAAAGAGCAAAGGAAGTTTCCGCAGCCCGTCGGGCAAGACGT
GTAGGGGCACAGGTCAAGACTTATCAGTCTCAAGCAACAGTTAGTAGTGT
CAAAGCAAAATATACGCCTGGTTCATCTGATGTTCACATTGAAGGATTGG
ACCTCGCGTTTGGAGGAATGACTTTATTGGAAGCCGCTGAGCTCCACATA
CCATACGGAAGAAGAGTTGGAATCATTGGAAGAAACGGATGTGGCAAGAC
AACATTGATGCGCGCGATTGCTCGTCGAGAGCTACCAATTCCGGAGGATA
TGGATATTGTATACGTCGAGCAAGAAATTGCTGGAAGTGAGAAGACCCCT
CTAGAGATAGTTTTAGAAAGTGATCTAGAGCGGCAAGAGCTTTTGAATGA
AGAGGAAGAGTTGAACGAGAAATTGGCTGAAGCAGAGGATAGCGGCGTAG
AGTCTGATCCTTCAGTGGTTGCGAGACTCGCCGAAGTTTATGAAAAATTG
GGACAGATGGACGCCGACAAGGCCAAGGCGCGTGCCGCAGCAATCCTAGA
TGGACTAGGTTTTAGTGATCATGCCATGACAAAACAAACGGTGAACGAGT
TTTCTGGTGGTTGGCGTATGCGCATTTCACTCGCTTCTGCTCTGTTTTTG
GAACCTAGGCTCTTGTTGTTGGATGAACCGTCAAACCATCTCGATGCAAT
GACTGTCATCTGGCTCGGAGATTATCTTTCTCGGTGGCCGCACACAATAG
CATGTGTTTCTCATGATCGAGCATTTCTGAACGAGATATGTACAGATATA
ATTCACGTTAAAGACCACAGGTTACATCCATATAGTGGTAACTACGATGA
TTTCGAGAAGGCAAGAAGAGAAAGACTCAAGGAGCTGGAACGCGCTGCTG
AAAGTCAAGAAATGAAGCGCGCACACATTCAGAAGTTCGTAGACAAATTC
CGTTACAACGCAAAGCGTGCTAGCATGGCTCAAAGTCGATTGAAGATGCT
CCAACGCATGGATGAAGATCGAGTGGTGCTTCCCAGCGAAGAGGACGAAT
TCTCATTCACCTTTCCGGACCCTGGAGCACTGACTGGCTCCCATGCATCC
GTTCAGATATGCGATGTGACGTTTGGCTATCCGGGAAGAGAAGTTCTATT
TCGGAGTTTAGATTTCAGTATAAATATGGATTCGAGAACAGTTCTTCTTG
GTCCGAATGGGGCGGGTAAGTCGACAATACTGAAGCTTCTTCTCGGGGAA
AATGTCCCAATCGAAGGTGAAGTGAAGAAGTCCCCGAAGCTGCGATTGGG
ATACTTCTCACAGCATCATATGGACACCCTTGTCTTGTGGCGAACACCCC
TGGAGCACATGAAAGTTACCTTCCCAGATGCAATAATGCCCGAGCTACGA
AGTCATTTGGCCAAATTGGGTGTACGGAATGATCAGGCGCTTCGACCAAT
CAATACGTTATCTGGGGGCCAAAAGAGTCGGGTGGCTCTCGCGGTCATCA
CTTTTCAGAAGCCTCATATTTTGATCCTTGATGAGCCCACCAATCATCTC
GATATTGAGACTCTGGATTCGCTGATATTGGCGTTGAATTCTTTCAACGG
AGGGTTGTTGGTAGTTACTCATGATGCGAGACTGGTTGCTAGCGTATGCG
AGACGATCTGTGTATGTGAGGATGGAAAGGTATCGGAGTTCAGGGGAGAG
TATGACGAATACCGAAAGCAAATGGTTCAAAGATTACGTGCGAGATCGAA
ACTTTTCTCTATGTAG