Gchil10676.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10676.t1
Unique NameGchil10676.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000138_piloncontigtig00000138_pilon:85501..86415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7955.ENSDARP00000092988
Preferred nameTDP2
PFAMsExo_endo_phos,UBA_4
Max annot lvl33208|Metazoa
KEGG koko:K19619
GOsGO:0000287,GO:0002009,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003712,GO:0003714,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0008081,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016234,GO:0016235,GO:0016604,GO:0016605,GO:0016787,GO:0016788,GO:0017015,GO:0019219,GO:0019222,GO:0022008,GO:0023051,GO:0023052,GO:0023057,GO:0030145,GO:0030154,GO:0030182,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0036317,GO:0042578,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045934,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048598,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060026,GO:0060027,GO:0060255,GO:0060429,GO:0065007,GO:0070013,GO:0070259,GO:0070260,GO:0071704,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2001141
Evalue3.07e-34
EggNOG OGsKOG2756@1|root,KOG2756@2759|Eukaryota,39RV8@33154|Opisthokonta,3BDKA@33208|Metazoa,3CYVS@33213|Bilateria,48FMM@7711|Chordata,49ED9@7742|Vertebrata,4A6FH@7898|Actinopterygii
Descriptiontyrosyl-DNA phosphodiesterase
COG categoryT
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10676Gchil10676Gracilaria chilensis NLEC103_M9 malegenetig00000138_pilon 85501..86415 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10676.t1.stop1Gchil10676.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000138_pilon 85501..85503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10676.t1.CDS1Gchil10676.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000138_pilon 85501..86415 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10676.t1.exon1Gchil10676.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000138_pilon 85501..86415 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10676.t1.start1Gchil10676.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000138_pilon 86413..86415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10676.t1Gchil10676.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000138_pilon 85501..86415 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10676.t1 ID=Gchil10676.t1|Name=Gchil10676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MSAADKQTVRVLSWNIDMDTEPIGPRLHGLLQQIHHIKPDVIMLQEVTPL
SFNLLSKFLWDPQPQPQPKHRSAQSNSSSHPAPNKEAPYHLHIDPTWPEQ
LPYFCLLLTRKNLLYNPETTFESFQTSNMCRGFVSASGIIHSGAMLFFVT
SHLESLKESSVERKNQLGQLLDLMRHKVDEGYCVFFAGDTNLREAEVPAS
QIIKHTANALAAPKKRKSTKERFSDVWVLAGAPEQHKFTWDMQNNDNLDF
EKAGFKPKARYDRAFVLSPSNAEHVSSFTLVGRQRLQCGKFISDHWGLCM
DMLY*
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spliced messenger RNA

>Gchil10676.t1 ID=Gchil10676.t1|Name=Gchil10676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000138_pilon:85501..86415- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTGCCGACAAGCAGACCGTCCGCGTTCTGTCCTGGAACATCGA
TATGGACACCGAGCCCATCGGGCCCCGCCTGCACGGCCTGCTGCAGCAAA
TTCACCACATCAAGCCCGACGTCATTATGCTGCAGGAAGTCACCCCGTTG
TCCTTCAACTTGCTCTCCAAATTTCTGTGGGATCCGCAACCGCAACCGCA
ACCGAAACACCGTTCCGCTCAGTCCAACTCGTCCTCACACCCAGCCCCCA
ACAAGGAGGCGCCGTACCACCTTCACATTGATCCGACATGGCCCGAGCAA
CTGCCTTATTTCTGCCTGTTACTCACTAGGAAGAACCTGCTGTACAACCC
GGAAACAACCTTCGAAAGCTTCCAAACCTCCAACATGTGTCGCGGCTTCG
TTTCCGCTTCCGGTATCATTCACAGCGGTGCCATGCTCTTCTTCGTCACC
AGTCACCTCGAGTCCCTCAAGGAAAGCTCCGTCGAAAGGAAGAACCAGCT
AGGCCAATTGCTCGACCTCATGCGCCACAAAGTGGACGAAGGCTACTGTG
TCTTCTTTGCTGGAGACACCAATCTGCGCGAGGCAGAAGTGCCGGCCTCG
CAAATCATCAAGCACACCGCCAACGCGCTTGCCGCTCCGAAGAAACGCAA
GTCCACAAAGGAACGATTTTCTGATGTGTGGGTGCTGGCCGGCGCCCCAG
AGCAGCATAAATTTACGTGGGACATGCAAAATAATGACAATCTTGACTTT
GAAAAAGCTGGCTTCAAGCCAAAAGCACGCTACGATCGTGCGTTCGTTCT
TTCCCCGTCCAATGCGGAACACGTTTCCAGCTTCACACTGGTGGGACGCC
AACGTCTGCAGTGTGGCAAGTTCATTAGTGATCACTGGGGCCTCTGCATG
GACATGCTTTACTAG
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protein sequence of Gchil10676.t1

>Gchil10676.t1 ID=Gchil10676.t1|Name=Gchil10676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MSAADKQTVRVLSWNIDMDTEPIGPRLHGLLQQIHHIKPDVIMLQEVTPL
SFNLLSKFLWDPQPQPQPKHRSAQSNSSSHPAPNKEAPYHLHIDPTWPEQ
LPYFCLLLTRKNLLYNPETTFESFQTSNMCRGFVSASGIIHSGAMLFFVT
SHLESLKESSVERKNQLGQLLDLMRHKVDEGYCVFFAGDTNLREAEVPAS
QIIKHTANALAAPKKRKSTKERFSDVWVLAGAPEQHKFTWDMQNNDNLDF
EKAGFKPKARYDRAFVLSPSNAEHVSSFTLVGRQRLQCGKFISDHWGLCM
DMLY*
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mRNA from alignment at tig00000138_pilon:85501..86415-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10676.t1 ID=Gchil10676.t1|Name=Gchil10676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000138_pilon:85501..86415- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTGCCGACAAGCAGACCGTCCGCGTTCTGTCCTGGAACATCGA
TATGGACACCGAGCCCATCGGGCCCCGCCTGCACGGCCTGCTGCAGCAAA
TTCACCACATCAAGCCCGACGTCATTATGCTGCAGGAAGTCACCCCGTTG
TCCTTCAACTTGCTCTCCAAATTTCTGTGGGATCCGCAACCGCAACCGCA
ACCGAAACACCGTTCCGCTCAGTCCAACTCGTCCTCACACCCAGCCCCCA
ACAAGGAGGCGCCGTACCACCTTCACATTGATCCGACATGGCCCGAGCAA
CTGCCTTATTTCTGCCTGTTACTCACTAGGAAGAACCTGCTGTACAACCC
GGAAACAACCTTCGAAAGCTTCCAAACCTCCAACATGTGTCGCGGCTTCG
TTTCCGCTTCCGGTATCATTCACAGCGGTGCCATGCTCTTCTTCGTCACC
AGTCACCTCGAGTCCCTCAAGGAAAGCTCCGTCGAAAGGAAGAACCAGCT
AGGCCAATTGCTCGACCTCATGCGCCACAAAGTGGACGAAGGCTACTGTG
TCTTCTTTGCTGGAGACACCAATCTGCGCGAGGCAGAAGTGCCGGCCTCG
CAAATCATCAAGCACACCGCCAACGCGCTTGCCGCTCCGAAGAAACGCAA
GTCCACAAAGGAACGATTTTCTGATGTGTGGGTGCTGGCCGGCGCCCCAG
AGCAGCATAAATTTACGTGGGACATGCAAAATAATGACAATCTTGACTTT
GAAAAAGCTGGCTTCAAGCCAAAAGCACGCTACGATCGTGCGTTCGTTCT
TTCCCCGTCCAATGCGGAACACGTTTCCAGCTTCACACTGGTGGGACGCC
AACGTCTGCAGTGTGGCAAGTTCATTAGTGATCACTGGGGCCTCTGCATG
GACATGCTTTACTAG
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Coding sequence (CDS) from alignment at tig00000138_pilon:85501..86415-

>Gchil10676.t1 ID=Gchil10676.t1|Name=Gchil10676.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000138_pilon:85501..86415- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTGCCGACAAGCAGACCGTCCGCGTTCTGTCCTGGAACATCGA
TATGGACACCGAGCCCATCGGGCCCCGCCTGCACGGCCTGCTGCAGCAAA
TTCACCACATCAAGCCCGACGTCATTATGCTGCAGGAAGTCACCCCGTTG
TCCTTCAACTTGCTCTCCAAATTTCTGTGGGATCCGCAACCGCAACCGCA
ACCGAAACACCGTTCCGCTCAGTCCAACTCGTCCTCACACCCAGCCCCCA
ACAAGGAGGCGCCGTACCACCTTCACATTGATCCGACATGGCCCGAGCAA
CTGCCTTATTTCTGCCTGTTACTCACTAGGAAGAACCTGCTGTACAACCC
GGAAACAACCTTCGAAAGCTTCCAAACCTCCAACATGTGTCGCGGCTTCG
TTTCCGCTTCCGGTATCATTCACAGCGGTGCCATGCTCTTCTTCGTCACC
AGTCACCTCGAGTCCCTCAAGGAAAGCTCCGTCGAAAGGAAGAACCAGCT
AGGCCAATTGCTCGACCTCATGCGCCACAAAGTGGACGAAGGCTACTGTG
TCTTCTTTGCTGGAGACACCAATCTGCGCGAGGCAGAAGTGCCGGCCTCG
CAAATCATCAAGCACACCGCCAACGCGCTTGCCGCTCCGAAGAAACGCAA
GTCCACAAAGGAACGATTTTCTGATGTGTGGGTGCTGGCCGGCGCCCCAG
AGCAGCATAAATTTACGTGGGACATGCAAAATAATGACAATCTTGACTTT
GAAAAAGCTGGCTTCAAGCCAAAAGCACGCTACGATCGTGCGTTCGTTCT
TTCCCCGTCCAATGCGGAACACGTTTCCAGCTTCACACTGGTGGGACGCC
AACGTCTGCAGTGTGGCAAGTTCATTAGTGATCACTGGGGCCTCTGCATG
GACATGCTTTACTAG
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